genome.fa.s8029.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008029.1 Hibiscus syriacus cultivar Beakdansim tig00110505_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3983240

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461281--461519	125	1.9	126	90	0	381	33	19	6	40	1.77
461672--461906	60	3.9	60	91	2	357	29	20	13	36	1.91
461656--462224	118	4.8	117	77	12	429	29	21	11	36	1.90
461761--462216	177	2.6	174	81	8	476	30	22	11	36	1.89
461761--462223	59	7.8	59	81	6	412	30	22	11	36	1.89
465495--465545	21	2.4	21	96	0	93	19	23	33	23	1.97
465653--465731	20	3.8	20	76	17	79	25	20	32	21	1.97
465653--465747	21	4.5	21	76	6	93	25	18	34	21	1.96
467649--467685	17	2.2	17	95	0	65	0	27	5	67	1.12
470139--470238	21	4.7	21	82	10	123	22	19	37	22	1.95
470461--470500	21	1.9	21	89	0	62	50	10	10	30	1.69
474711--474750	21	1.9	21	89	0	62	50	10	10	30	1.69
478781--478852	21	3.4	21	92	0	117	20	25	31	22	1.98
479250--479289	21	1.9	21	89	0	62	50	10	10	30	1.69
483459--483538	21	3.7	22	75	15	78	21	18	35	25	1.96
483899--484081	64	2.8	65	78	7	178	28	22	20	27	1.99
484027--484075	19	2.6	19	84	9	57	24	28	20	26	1.99
490496--490539	21	2.1	21	82	0	52	9	43	15	31	1.79
491095--491141	2	23.5	2	100	0	94	48	0	0	51	1.00
491639--491824	65	2.9	64	82	5	216	31	24	18	26	1.97
494939--494982	21	2.1	21	82	0	52	9	43	15	31	1.79
495816--495857	21	1.9	23	85	9	61	38	4	9	47	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496070--496255	65	2.9	64	78	8	198	30	23	19	26	1.98
506956--507106	65	2.3	65	85	5	191	29	23	19	27	1.99
507992--508031	21	1.9	21	94	0	71	52	10	10	27	1.66
509122--509167	21	2.2	21	100	0	92	30	23	21	23	1.99
510954--511011	20	2.8	20	82	12	64	22	20	32	24	1.98
511234--511273	21	1.9	21	89	0	62	50	10	10	30	1.69
515705--515744	21	1.9	21	89	0	62	50	10	10	30	1.69
518091--518136	21	2.2	21	92	0	74	32	23	17	26	1.97
520214--520253	21	1.9	21	94	0	71	50	7	10	32	1.64
523353--523393	21	1.9	22	90	5	66	24	14	34	26	1.94
525343--525391	15	3.3	15	80	11	64	55	0	14	30	1.40
525670--525810	18	7.9	18	87	1	212	18	21	33	26	1.96
528029--528088	25	2.4	25	94	0	102	55	6	21	16	1.64
528422--528461	7	5.7	7	96	0	71	0	40	0	60	0.97
529059--529116	20	2.6	23	86	10	77	31	20	20	27	1.98
529941--530082	18	7.9	18	87	0	212	17	22	32	27	1.96
530340--530379	2	20.0	2	100	0	80	50	0	0	50	1.00
535575--535811	117	2.0	117	83	1	296	31	13	6	47	1.69
538061--538149	42	2.1	42	93	2	153	43	13	15	26	1.84
550528--550592	32	2.0	32	87	0	94	36	15	7	40	1.76
551152--551187	17	2.1	17	94	0	63	38	13	16	30	1.88
556983--557017	18	1.9	18	88	0	52	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558725--558760	17	2.1	18	89	5	56	52	0	0	47	1.00
559692--559750	18	3.1	18	75	17	64	50	1	0	47	1.11
559707--559759	22	2.4	22	93	0	88	54	1	0	43	1.11
563742--563901	79	2.0	79	97	0	302	18	20	18	43	1.89
565105--565451	171	2.0	171	97	1	660	30	12	21	34	1.91
565493--565525	3	11.3	3	93	6	59	0	30	0	69	0.88
574481--574528	22	2.1	24	88	7	73	35	47	16	0	1.47
575451--575663	109	2.0	109	83	1	275	19	13	15	51	1.76
585862--585933	30	2.4	30	85	0	90	30	26	22	20	1.98
585973--586090	32	3.7	31	84	7	166	31	17	16	33	1.93
585945--586110	63	2.7	63	91	0	271	31	18	16	33	1.93
585921--586107	31	5.9	32	77	12	181	32	19	16	31	1.94
590790--590861	30	2.4	30	85	0	90	30	26	22	20	1.98
590848--591035	31	6.0	31	77	11	195	30	19	19	30	1.96
590873--591038	63	2.7	63	96	0	298	30	18	18	32	1.95
592194--592228	18	1.9	18	94	0	61	25	31	28	14	1.95
596264--596347	5	15.8	5	86	10	96	78	0	17	3	0.89
596264--596336	17	4.5	17	89	8	116	80	0	17	1	0.78
596259--596331	22	3.3	22	88	9	112	80	0	17	1	0.78
596339--596492	7	22.3	7	97	1	276	74	0	14	11	1.08
597506--598129	140	4.4	140	88	4	864	33	17	21	27	1.95
597506--598126	279	2.2	283	88	5	898	33	17	21	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598008--598032	12	2.1	12	100	0	50	16	24	16	44	1.86
598463--598528	23	2.8	24	82	13	75	39	45	13	1	1.53
599278--599305	14	2.0	14	100	0	56	7	21	50	21	1.72
599302--599397	19	4.9	19	85	8	122	29	29	26	15	1.96
599301--599397	29	3.4	28	80	11	106	28	28	26	15	1.96
599300--599397	9	10.2	9	77	12	97	28	28	27	15	1.96
600636--600737	5	18.8	5	83	16	100	82	0	16	0	0.73
600636--600737	17	5.9	17	83	16	131	82	0	16	0	0.73
600631--600737	39	2.7	39	86	11	132	81	0	16	1	0.78
601748--602368	138	4.4	139	86	6	810	33	17	20	27	1.95
602247--602271	12	2.1	12	100	0	50	16	24	16	44	1.86
601748--602365	278	2.2	276	88	5	873	33	17	20	27	1.95
602705--602771	23	2.9	23	86	10	84	40	46	13	0	1.43
603525--603559	9	3.9	9	96	0	61	5	22	48	22	1.72
603521--603566	23	2.0	23	87	8	67	6	21	50	21	1.71
603563--603641	19	4.1	19	80	11	79	31	27	22	17	1.97
603580--603641	10	6.3	11	74	20	57	29	27	25	17	1.98
603586--603641	20	2.8	20	86	7	78	30	28	25	16	1.96
609010--609256	43	5.7	42	70	14	144	54	6	15	23	1.64
609010--609267	86	3.0	87	80	9	230	55	6	14	23	1.62
609092--609267	87	2.0	86	83	10	218	58	6	12	22	1.56
611072--611596	262	2.0	262	100	0	1050	27	20	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612009--612035	2	13.5	2	100	0	54	51	0	0	48	1.00
612785--612827	22	1.9	23	95	4	79	27	18	6	46	1.75
613972--614022	14	3.8	13	80	10	50	62	1	0	35	1.06
614317--614347	16	1.9	16	93	0	53	19	12	19	48	1.81
616274--616317	2	22.5	2	95	4	81	50	0	0	50	1.00
617690--617749	32	1.9	31	83	16	79	50	6	0	43	1.28
618947--618975	12	2.4	12	100	0	58	41	27	17	13	1.87
620459--620501	18	2.4	18	88	7	61	20	9	4	65	1.40
620459--620512	18	2.9	18	83	8	56	22	9	3	64	1.38
621831--621918	42	2.1	42	97	0	167	37	37	14	10	1.81
622852--622973	64	1.9	64	86	0	172	36	21	17	24	1.94
622860--623009	64	2.3	64	81	4	160	35	20	18	26	1.95
623784--623808	2	12.5	2	100	0	50	52	0	0	48	1.00
624549--624606	22	2.5	22	91	5	89	17	24	29	29	1.97
627461--627506	20	2.3	20	96	0	83	23	15	28	32	1.95
628243--628267	2	12.5	2	100	0	50	52	0	0	48	1.00
629008--629074	23	2.9	23	93	0	107	20	22	25	31	1.98
634505--634558	18	2.9	19	79	17	60	24	9	0	66	1.20
641999--642065	26	2.6	26	97	2	127	40	11	0	47	1.40
642048--642084	10	3.7	10	100	0	74	51	0	0	48	1.00
643718--643754	14	2.6	15	79	12	51	62	0	0	37	0.96
647871--647935	21	3.0	21	93	2	103	26	32	24	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648765--648831	30	2.2	31	83	2	82	32	26	19	20	1.97
648792--648948	32	4.9	32	71	12	108	33	20	16	29	1.95
654286--654338	24	2.2	24	93	0	88	60	1	9	28	1.38
655520--655614	3	32.7	3	76	14	83	56	1	3	38	1.22
655520--655614	26	3.7	27	77	16	103	56	1	3	38	1.22
662029--662077	20	2.5	20	90	6	73	28	26	20	24	1.99
662079--662135	20	2.8	21	75	5	62	22	19	14	43	1.86
662069--662141	21	3.5	21	75	3	67	24	20	16	38	1.93
662131--662181	20	2.5	20	87	6	68	33	23	19	23	1.97
662068--662161	41	2.3	41	75	3	100	28	20	17	34	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18