genome.fa.s8033.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008033.1 Hibiscus syriacus cultivar Beakdansim tig00110515_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3048429

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  10  of  14  ( 1580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1769017--1769079	27	2.3	27	84	13	76	47	9	3	39	1.52
1772987--1773035	18	2.6	18	80	9	53	32	20	26	20	1.97
1775740--1775787	14	3.4	14	72	11	53	16	25	45	12	1.82
1775728--1775788	28	2.2	28	100	0	122	18	27	40	13	1.87
1775968--1776009	20	2.1	20	86	8	59	28	30	0	40	1.57
1778305--1778396	33	2.8	32	82	11	89	23	2	9	64	1.35
1781621--1781667	22	2.1	22	96	0	85	46	12	6	34	1.67
1787366--1787417	27	2.0	27	84	3	70	44	3	1	50	1.31
1787401--1787463	27	2.3	27	81	13	67	47	11	3	38	1.55
1789317--1789359	21	2.0	21	95	0	77	11	0	51	37	1.39
1792537--1792672	60	2.3	60	84	5	168	37	10	11	40	1.76
1797930--1797959	2	15.5	2	93	6	53	53	0	0	46	1.00
1797965--1798018	22	2.4	22	81	6	63	33	1	1	62	1.16
1797940--1798147	115	1.8	114	96	3	391	41	4	1	51	1.32
1798818--1798891	34	2.1	35	80	7	89	21	4	6	67	1.31
1798924--1799014	27	3.3	27	93	6	164	32	12	12	42	1.79
1799124--1799172	24	1.9	26	84	12	66	53	2	2	42	1.24
1799473--1799529	23	2.4	23	80	11	71	56	1	3	38	1.27
1807972--1808054	18	4.8	17	76	8	87	37	10	10	40	1.75
1807972--1808054	35	2.4	35	81	4	105	37	10	10	40	1.75
1808371--1808403	17	1.9	17	93	0	57	69	3	12	15	1.30
1810103--1810143	18	2.3	18	100	0	82	26	7	24	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814731--1814813	24	3.5	24	81	0	103	22	15	19	42	1.89
1819075--1819144	24	2.9	24	75	12	63	21	12	22	42	1.87
1826646--1826689	20	2.2	20	95	0	79	40	25	13	20	1.89
1826705--1826741	19	1.9	19	100	0	74	21	16	21	40	1.91
1826886--1826932	22	2.1	22	92	0	76	23	38	10	27	1.88
1827583--1827628	20	2.3	20	96	0	83	52	17	17	13	1.75
1829355--1829452	21	4.6	23	69	12	59	21	12	33	32	1.90
1829746--1829824	21	3.9	21	72	11	74	25	36	13	24	1.92
1829786--1829844	21	2.9	21	79	2	66	25	42	15	16	1.88
1829750--1829841	42	2.2	40	83	11	107	26	36	15	21	1.93
1831359--1831408	20	2.5	20	76	0	55	48	18	14	20	1.82
1831437--1831536	41	2.4	42	86	3	130	35	22	17	26	1.95
1831748--1831783	18	2.0	18	94	0	63	16	2	25	55	1.55
1833850--1833874	12	2.1	12	100	0	50	0	28	0	72	0.86
1834750--1834787	16	2.5	15	84	12	51	65	0	5	28	1.14
1834956--1835014	20	2.9	21	76	5	57	27	10	22	40	1.85
1835098--1835176	20	3.9	20	84	1	77	25	12	18	43	1.86
1840316--1840364	19	2.7	17	84	9	53	26	20	28	24	1.99
1840315--1840495	65	2.8	62	80	10	204	26	19	24	29	1.98
1840336--1840536	65	3.1	64	80	7	210	25	18	24	31	1.98
1843148--1843227	24	3.5	23	72	17	78	28	22	25	23	1.99
1848950--1849150	65	3.1	64	81	11	207	26	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1850489--1850526	18	2.1	18	90	0	58	28	7	2	60	1.38
1856809--1856844	18	2.0	18	88	0	54	30	30	19	19	1.96
1857048--1857082	9	4.0	9	85	7	54	42	20	0	37	1.52
1857386--1857420	15	2.3	15	90	0	61	40	25	5	28	1.78
1861233--1861279	9	5.1	9	84	10	60	40	19	0	40	1.51
1861735--1861908	84	2.1	84	96	0	321	27	22	17	32	1.96
1861881--1861935	21	2.6	21	80	11	76	20	27	23	29	1.99
1869371--1869404	15	2.3	15	89	0	50	29	0	20	50	1.49
1871804--1871846	13	3.1	15	83	12	56	58	0	0	41	0.98
1872132--1872184	26	2.0	26	100	0	106	47	33	3	15	1.63
1872399--1872433	15	2.3	15	100	0	70	77	0	0	22	0.78
1872401--1872448	15	3.4	14	80	11	53	70	2	0	27	0.98
1872401--1872455	28	2.0	28	82	7	67	67	3	1	27	1.17
1872835--1872942	39	2.8	39	80	5	128	45	0	17	36	1.55
1873378--1873440	33	1.9	33	93	0	108	9	38	33	19	1.84
1873738--1873959	111	2.0	111	94	1	392	35	8	11	45	1.70
1875467--1875501	18	1.9	18	100	0	70	28	28	17	25	1.97
1875839--1875876	9	4.2	9	93	0	67	34	18	34	13	1.89
1883067--1883108	22	1.9	22	85	0	57	19	11	2	66	1.34
1887153--1887205	24	2.4	21	77	22	56	22	5	13	58	1.56
1887304--1887359	25	2.2	26	78	15	64	16	8	3	71	1.25
1890378--1890688	145	2.1	146	94	1	552	26	24	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1890434--1890688	72	3.5	72	67	15	211	26	25	23	25	2.00
1893433--1893490	13	4.5	13	91	0	98	15	44	22	17	1.86
1894779--1894813	18	1.9	18	88	0	52	54	0	17	28	1.43
1898568--1898598	15	2.1	15	100	0	62	12	32	25	29	1.93
1898562--1898616	8	6.5	8	83	12	58	16	34	23	25	1.95
1899883--1899916	17	2.0	17	88	0	50	55	0	17	26	1.42
1905291--1905370	23	3.7	21	76	15	65	25	28	25	21	1.99
1905292--1905350	23	2.6	22	83	2	73	23	28	25	22	1.99
1907507--1907662	78	2.0	78	100	0	312	28	21	23	26	1.99
1909152--1909200	11	4.4	12	80	10	52	30	2	0	67	1.02
1909154--1909209	7	7.6	7	81	15	60	28	3	0	67	1.07
1909712--1909825	32	3.6	31	73	10	106	45	8	4	41	1.55
1911262--1911309	25	1.9	25	86	0	69	22	8	0	68	1.16
1911260--1911315	25	2.2	25	77	0	67	19	7	0	73	1.06
1911955--1911980	13	2.0	13	100	0	52	53	15	15	15	1.73
1911976--1912057	3	27.7	3	97	2	157	67	0	0	32	0.91
1919310--1919361	21	2.5	21	93	0	95	26	17	19	36	1.94
1923104--1923152	16	3.3	16	72	21	61	55	38	0	6	1.25
1923104--1923163	28	2.2	28	93	3	104	55	36	1	6	1.36
1926730--1926790	21	2.7	23	87	10	81	63	8	3	24	1.37
1927132--1927286	21	7.5	21	70	10	79	25	21	18	34	1.96
1927278--1927387	20	5.4	20	77	4	105	40	19	19	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1927909--1927975	19	3.5	19	85	2	89	47	25	16	10	1.78
1927985--1928105	33	3.6	33	88	1	170	14	23	19	42	1.88
1928070--1928130	20	3.1	19	76	17	61	14	24	16	44	1.85
1928532--1928623	42	2.2	42	86	1	132	21	15	41	21	1.90
1928961--1929033	20	3.7	20	90	0	74	34	27	16	21	1.95
1928967--1929052	40	2.2	40	85	4	111	34	26	20	17	1.95
1928987--1929073	20	4.4	20	88	1	122	36	24	24	14	1.93
1929062--1929092	14	2.3	13	94	5	53	54	25	12	6	1.62
1929099--1929165	19	3.8	19	75	18	81	11	19	20	47	1.81
1929121--1929176	14	3.6	14	74	21	58	10	17	25	46	1.80
1929104--1929196	33	2.8	33	90	1	141	11	20	23	44	1.85
1929168--1929215	20	2.4	20	89	0	69	14	22	27	35	1.93
1929749--1929794	18	2.6	17	86	6	74	15	13	43	28	1.83
1931115--1931157	20	2.2	20	91	0	68	55	18	16	9	1.67
1931436--1931479	22	2.0	22	90	0	70	20	15	43	20	1.88
1931672--1931738	20	3.3	20	87	0	98	28	13	29	28	1.94
1931646--1931783	41	3.4	41	76	6	145	23	15	24	35	1.94
1931666--1931779	20	5.7	20	76	6	95	24	16	26	32	1.96
1931713--1931843	41	3.2	41	83	5	140	22	21	20	35	1.96
1931774--1931864	21	4.3	21	100	0	182	23	23	15	38	1.92
1932292--1932345	3	18.0	3	100	0	108	66	0	0	33	0.92
1933079--1933113	5	7.0	5	100	0	70	20	0	40	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1936481--1936648	53	3.2	53	88	3	266	36	17	17	29	1.92
1936593--1936871	137	2.0	137	87	2	400	42	16	13	27	1.85
1943198--1943311	53	2.2	53	93	0	192	37	19	15	27	1.92
1943254--1943508	137	1.9	137	88	0	393	42	16	13	27	1.86
1949867--1949976	53	2.1	53	96	0	202	35	20	15	28	1.93
1949925--1950177	137	1.8	137	88	1	391	39	17	16	26	1.90
1951087--1951130	20	2.1	21	83	4	54	45	29	2	22	1.65
1953908--1953939	15	2.2	15	94	5	57	40	6	6	46	1.54
1954070--1954109	15	2.7	15	88	11	64	47	7	0	45	1.31
1963464--1966096	984	2.7	983	94	1	4553	36	20	11	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14