genome.fa.s8033.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008033.1 Hibiscus syriacus cultivar Beakdansim tig00110515_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3048429

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531946--532217	45	6.0	45	92	0	454	31	22	5	40	1.78
533499--533592	13	7.3	13	80	16	83	15	44	22	17	1.86
533477--533571	18	5.6	18	82	12	137	16	49	21	12	1.79
533481--533592	31	3.5	31	80	13	131	16	45	22	16	1.85
533477--533577	49	2.1	49	96	0	184	16	48	20	13	1.81
533553--533599	8	6.5	8	77	22	59	14	38	25	21	1.92
533569--533600	7	4.4	7	92	7	55	12	34	28	25	1.92
533553--533599	15	3.3	15	91	5	71	14	38	25	21	1.92
536080--536174	24	4.0	24	72	5	75	23	12	16	47	1.81
538316--538407	13	6.3	13	75	22	85	16	47	21	14	1.81
538294--538401	18	6.6	18	78	20	137	16	50	21	12	1.77
538298--538407	31	3.5	31	97	0	211	16	48	21	13	1.81
539730--539765	18	2.0	18	88	0	54	52	0	16	30	1.44
540883--540988	24	4.5	23	73	8	79	22	13	16	47	1.82
550716--550753	18	2.1	18	85	9	51	36	23	5	34	1.78
560070--560109	20	2.0	20	90	0	62	20	35	25	20	1.96
562406--562438	16	2.1	16	94	0	57	36	0	15	48	1.45
564222--565580	452	3.0	452	98	0	2607	36	14	20	28	1.92
571222--571266	18	2.6	18	76	23	51	77	0	22	0	0.76
571230--571265	11	3.4	11	84	7	56	77	0	22	0	0.76
571229--571285	17	3.7	15	78	19	55	78	0	17	3	0.88
576336--576448	55	2.1	55	86	3	156	46	7	7	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578469--578508	21	1.9	21	84	0	53	32	20	17	30	1.95
578543--578589	21	2.2	21	88	0	67	34	23	21	21	1.97
588268--588326	27	2.2	27	90	0	100	33	15	5	45	1.68
591182--591298	59	2.0	59	89	0	180	29	20	17	31	1.96
597460--597633	81	2.1	81	88	0	258	27	19	15	37	1.92
597965--598402	46	9.5	46	90	0	660	21	22	9	45	1.81
598457--598495	20	1.9	21	89	5	62	20	20	12	46	1.83
598391--598553	46	3.6	46	85	0	211	20	21	9	47	1.79
598385--598553	91	1.8	93	84	2	234	20	20	10	48	1.78
598986--599078	42	2.2	41	83	5	107	25	22	15	36	1.93
600969--600995	2	13.5	2	100	0	54	48	0	0	51	1.00
603196--603450	81	3.1	81	94	0	447	26	21	14	37	1.92
603145--603450	162	1.9	162	88	1	470	26	21	14	37	1.92
603585--603693	55	2.0	55	81	3	130	34	20	7	37	1.80
603845--604088	26	10.7	20	71	20	110	21	25	10	43	1.84
603833--603950	46	2.6	46	95	0	218	20	23	11	44	1.83
603865--604022	72	2.2	72	93	0	262	20	24	10	44	1.83
603833--604068	118	2.0	118	93	1	402	21	24	10	44	1.83
603937--604100	46	3.6	46	93	2	276	21	25	9	43	1.83
604524--604601	22	3.6	22	70	19	65	24	21	15	38	1.92
607874--607916	16	2.7	16	92	0	68	18	2	30	48	1.60
609470--609519	13	3.8	13	73	19	50	20	6	4	70	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610079--610116	17	2.2	18	86	9	53	26	18	2	52	1.58
614424--614466	20	2.2	19	87	8	59	58	0	16	25	1.38
614543--614576	17	2.0	17	94	0	59	26	0	38	35	1.57
614573--614619	23	2.0	24	91	4	78	27	0	34	38	1.57
615130--615186	25	2.3	25	93	0	105	26	19	22	31	1.98
616187--616228	7	6.0	7	100	0	84	57	14	14	14	1.66
623708--623733	2	13.0	2	100	0	52	50	0	0	50	1.00
624841--624967	67	1.9	67	88	0	191	38	21	18	22	1.93
624863--624968	31	3.3	31	65	17	79	40	24	16	18	1.90
626899--626943	14	3.2	14	90	0	72	35	15	28	20	1.93
626942--626991	14	3.6	14	83	0	64	30	12	26	32	1.92
626942--627001	28	2.1	28	84	6	77	28	11	28	31	1.92
626983--627021	20	1.9	21	89	5	62	17	15	35	30	1.91
630438--630484	21	2.3	21	96	3	87	40	8	17	34	1.79
633046--633088	17	2.5	17	100	0	86	32	32	0	34	1.58
634268--634605	131	2.6	131	81	4	387	39	17	11	31	1.84
635957--636002	20	2.3	20	100	0	92	54	28	4	13	1.57
636442--636486	19	2.4	19	96	0	81	20	11	42	26	1.85
636873--637268	134	3.0	134	80	2	388	29	13	21	34	1.93
645279--645328	20	2.5	21	77	6	59	34	32	12	22	1.90
646013--646106	20	4.8	19	73	11	57	14	11	21	52	1.74
646029--646098	20	3.5	20	82	1	79	12	10	22	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647994--648042	20	2.5	20	89	0	71	34	24	20	20	1.96
648076--648113	20	1.9	20	94	0	67	47	18	21	13	1.82
648118--648154	19	1.9	19	94	0	65	5	8	29	56	1.51
648123--648162	19	2.1	19	90	0	62	7	12	27	52	1.66
648182--648242	19	3.2	19	74	23	56	19	19	24	36	1.95
648230--648272	20	2.2	20	87	4	61	16	13	18	51	1.77
648744--648851	21	5.1	21	74	4	92	20	37	18	24	1.94
648744--648866	42	2.9	42	80	2	140	21	36	17	23	1.95
648797--648866	21	3.3	21	73	11	63	22	35	20	21	1.96
650211--650288	20	3.9	20	80	6	86	43	24	17	14	1.86
650278--650457	20	9.6	20	72	14	134	25	18	21	34	1.96
650293--650429	34	3.9	34	74	12	123	22	19	21	35	1.96
650278--650457	74	2.4	74	81	4	222	25	18	21	34	1.96
650428--650683	126	2.0	128	96	2	471	41	14	14	29	1.85
650753--650787	18	1.9	18	94	0	61	17	2	25	54	1.57
650878--651543	331	2.0	332	98	0	1300	25	22	20	31	1.98
653143--653177	13	2.6	13	86	4	52	5	20	22	51	1.68
653379--653425	24	2.0	24	95	0	85	34	17	21	27	1.95
653383--653434	24	2.2	24	85	0	68	36	19	19	25	1.95
654126--654214	20	4.4	20	79	8	108	22	15	29	32	1.95
654141--654235	41	2.3	41	96	0	172	21	16	27	34	1.95
654161--654237	21	3.7	21	74	10	86	19	15	25	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654127--654255	61	2.1	61	81	8	147	22	15	25	36	1.93
659051--659153	51	2.0	51	100	0	206	45	17	9	27	1.79
659795--659823	4	7.5	4	92	7	51	20	0	0	79	0.74
662286--662324	3	13.0	3	84	10	53	66	0	2	30	1.05
662691--662753	17	3.4	17	69	26	56	19	23	6	50	1.70
662545--662901	137	2.6	138	86	4	479	26	19	15	39	1.91
662817--663151	123	2.7	123	90	2	519	24	20	17	38	1.93
663528--663670	22	6.5	22	85	1	180	37	12	13	36	1.82
663528--663677	66	2.3	66	87	3	203	38	12	13	36	1.82
664563--664603	21	1.9	22	85	14	59	51	4	14	29	1.63
664959--664999	13	3.2	13	86	3	57	0	17	0	82	0.66
674463--674496	16	2.1	16	88	0	50	38	23	0	38	1.55
677160--677216	3	20.0	3	82	10	75	63	0	3	33	1.12
677160--677220	11	5.5	11	88	7	81	63	0	3	32	1.10
677160--677216	14	4.0	14	82	11	71	63	0	3	33	1.12
677212--677237	4	6.5	4	100	0	52	76	0	0	23	0.78
677160--677232	11	7.0	10	85	11	78	65	0	2	31	1.06
678993--679030	14	2.7	14	88	8	51	7	5	7	78	1.07
683411--683440	15	1.9	16	93	6	53	60	3	3	33	1.30
686914--687007	41	2.3	42	83	1	109	30	20	20	28	1.97
687029--687336	114	2.7	114	92	2	503	33	23	13	30	1.93
687387--688007	39	15.9	39	86	1	816	35	16	17	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688043--688172	37	3.5	36	67	18	95	41	10	16	31	1.82
687982--688396	75	5.5	77	82	8	437	40	12	15	30	1.85
687973--688328	151	2.4	150	84	6	459	40	12	16	31	1.85
688283--688413	36	3.6	36	72	11	104	39	18	17	24	1.92
689571--689626	11	5.3	10	78	16	51	1	14	3	80	0.93
689572--689626	15	3.5	15	77	20	51	1	14	3	80	0.94
689574--689626	28	2.0	26	85	7	70	1	15	3	79	0.96
689581--689629	18	2.7	18	83	3	62	2	16	4	77	1.01
689618--689658	15	2.8	15	96	3	75	2	19	7	70	1.22
698755--698959	40	5.1	40	71	10	139	32	16	20	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14