Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008033.1 Hibiscus syriacus cultivar Beakdansim tig00110515_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3048429

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1580 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2990533--2990618
45
1.9
45
82
0
109
26
11
22
39
1.88
2992779--2992828
16
3.1
16
82
8
57
68
0
18
14
1.22
2993027--2993070
6
7.2
6
82
12
54
0
18
2
79
0.83
2993027--2993070
13
3.6
12
82
11
54
0
18
2
79
0.83
2993290--2993360
15
5.4
15
63
30
54
52
0
23
23
1.48
2993290--2993373
25
3.4
25
100
0
168
52
0
23
23
1.47
3004734--3004766
9
3.7
9
88
12
50
87
0
0
12
0.53
3004735--3004760
11
2.4
11
100
0
52
92
0
0
7
0.39
3009723--3009785
8
8.0
8
76
13
60
82
11
6
0
0.83
3009723--3009785
23
2.7
22
77
18
65
82
11
6
0
0.83
3009747--3009797
13
4.4
12
80
16
54
78
9
9
1
1.04
3009747--3009777
13
2.4
13
100
0
62
80
6
12
0
0.89
3009742--3009777
13
2.6
14
86
13
56
80
8
11
0
0.90
3009758--3009797
21
1.9
21
89
0
62
80
10
7
2
1.00
3009760--3009804
10
4.4
10
80
5
54
75
13
8
2
1.13
3018858--3018887
13
2.4
13
94
5
53
43
0
30
26
1.55
3021844--3021885
22
2.0
21
85
4
57
28
2
33
35
1.70
3025886--3025925
21
1.9
21
85
10
55
62
0
17
20
1.33
3044679--3044720
17
2.4
18
88
11
61
21
14
0
64
1.29
3045140--3045232
40
2.3
41
92
5
156
18
26
4
50
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!