genome.fa.s8033.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008033.1 Hibiscus syriacus cultivar Beakdansim tig00110515_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3048429

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432529--432760	93	2.5	92	80	4	241	37	10	13	38	1.80
433122--433404	154	1.8	154	81	1	352	36	10	14	38	1.81
433316--433633	169	1.9	167	82	9	396	33	10	15	40	1.81
433249--433633	113	3.4	111	75	10	320	34	10	15	39	1.82
433286--433845	56	10.1	56	74	8	340	34	10	15	39	1.81
435122--435565	54	8.3	54	84	4	562	33	19	19	27	1.96
435124--435565	160	2.8	158	87	3	611	33	19	19	28	1.96
435710--436038	81	4.1	81	88	0	469	36	12	24	27	1.91
435710--436083	81	4.6	81	85	0	435	36	12	23	27	1.91
439281--439329	24	2.0	25	92	4	82	38	0	18	42	1.50
447899--448016	61	1.9	61	82	3	148	17	23	27	31	1.97
449171--449540	54	6.8	54	84	0	443	35	19	18	27	1.95
449711--450014	160	1.9	162	90	1	495	34	13	23	29	1.92
449704--450039	81	4.2	81	87	1	478	35	12	22	29	1.91
450964--451600	56	11.5	55	72	9	298	34	10	14	40	1.80
451669--451789	56	2.2	56	84	0	152	33	9	12	43	1.75
451716--451900	98	1.9	97	80	5	212	32	9	15	42	1.78
451805--452878	56	19.3	56	70	12	414	35	10	14	39	1.80
452914--453036	56	2.2	56	83	0	147	34	7	14	43	1.73
452962--453149	98	1.9	97	82	3	234	32	10	15	41	1.80
453050--454239	56	21.2	57	71	8	251	36	10	15	37	1.82
452922--453205	154	1.8	154	79	1	327	33	9	16	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453470--454161	56	12.4	56	73	7	297	37	10	14	37	1.81
453360--454201	168	5.0	165	72	10	489	36	10	14	37	1.82
453087--454199	112	9.9	111	70	10	425	36	10	15	37	1.82
454249--454419	92	1.8	92	84	1	234	39	11	13	35	1.81
454372--454697	56	5.9	55	72	8	187	36	8	15	39	1.77
454805--454938	56	2.4	55	83	5	153	36	13	14	35	1.85
454859--455036	98	1.8	98	85	0	248	36	14	12	36	1.84
454937--456354	56	25.3	56	73	7	869	35	9	15	39	1.80
455576--456031	225	2.0	223	81	7	521	36	10	13	39	1.79
456389--456522	56	2.4	56	87	5	182	35	11	11	41	1.78
456566--457076	56	9.1	56	73	5	359	34	10	18	37	1.84
457855--457895	17	2.4	17	91	0	64	14	19	29	36	1.92
460331--460375	20	2.2	20	100	0	90	42	11	8	37	1.72
460599--461229	57	11.2	57	74	6	396	36	10	15	37	1.82
461352--461508	56	2.8	56	77	3	154	35	8	15	40	1.78
461464--461598	56	2.4	56	75	9	132	35	9	11	42	1.74
461869--462133	57	4.7	56	72	12	166	35	9	15	39	1.80
461927--462133	114	1.8	114	80	6	249	33	9	16	40	1.81
461927--462133	57	3.6	56	77	5	193	33	9	16	40	1.81
462537--462753	56	3.9	56	79	3	224	35	11	14	38	1.83
463377--463710	46	7.4	46	86	4	491	24	21	10	43	1.84
463444--463697	20	11.5	20	75	18	202	24	23	9	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463371--463696	178	1.8	178	92	1	555	24	21	10	43	1.84
464171--464226	22	2.7	20	76	10	58	26	26	16	30	1.96
464096--464301	95	2.2	95	91	1	342	25	24	16	33	1.95
472106--472135	13	2.4	13	94	5	53	26	30	0	43	1.55
477522--477806	26	12.1	24	73	18	187	22	21	10	46	1.81
477488--477806	26	13.6	26	71	18	179	22	21	10	46	1.81
477577--477794	20	9.7	20	75	16	130	21	22	10	45	1.82
477552--477807	46	5.6	46	81	10	326	22	21	10	46	1.81
477488--477794	112	2.7	110	79	10	271	22	22	10	45	1.81
478194--478415	94	2.3	95	91	2	349	26	25	15	32	1.96
479233--479616	56	6.9	56	69	5	150	36	8	15	39	1.78
479716--480322	56	10.9	55	71	11	198	35	10	15	37	1.83
479941--480339	112	3.6	112	74	10	343	34	12	15	37	1.86
480274--480500	93	2.5	91	84	5	269	37	12	15	34	1.85
480830--480925	50	1.9	51	89	2	149	31	7	15	45	1.73
480687--481071	56	7.0	55	71	9	176	37	8	12	41	1.73
481110--481247	56	2.5	56	83	2	161	33	11	10	44	1.74
481249--481360	56	2.0	57	87	1	163	37	8	16	37	1.80
481246--481485	56	4.2	56	72	7	162	37	10	16	36	1.82
481119--481401	154	1.8	154	83	1	370	35	10	14	39	1.80
490942--491759	56	14.6	55	73	9	403	35	10	14	39	1.81
490942--491789	112	7.5	110	72	8	523	35	10	14	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491433--491543	57	1.9	57	83	0	141	28	14	17	39	1.89
491218--491759	225	2.4	223	76	6	517	35	10	14	39	1.81
491728--491951	93	2.4	91	84	1	268	36	12	13	36	1.84
491966--493510	56	27.4	58	71	10	582	35	9	15	39	1.80
492052--493512	113	13.0	112	71	9	418	35	9	15	39	1.80
493575--493711	56	2.4	56	82	0	166	35	10	11	42	1.77
493753--494794	56	18.6	56	69	10	475	35	10	16	38	1.83
493842--494087	111	2.2	110	81	6	262	33	9	17	39	1.83
494728--495058	92	3.6	93	86	2	434	36	11	15	36	1.84
495007--495350	56	6.1	56	74	2	264	36	8	16	39	1.78
495381--495516	55	2.5	55	80	3	166	35	11	9	43	1.74
495518--498377	56	51.1	56	71	8	1306	35	10	15	38	1.82
497040--497347	167	1.8	166	80	5	361	34	11	15	37	1.84
497135--497562	113	3.8	112	75	4	290	35	10	15	38	1.82
495590--498299	890	3.0	891	86	3	3667	35	10	15	38	1.82
495524--498377	112	25.5	112	71	8	1438	35	10	15	38	1.82
498422--498547	56	2.2	56	80	0	135	38	7	16	38	1.76
498853--499282	56	7.6	56	73	7	185	36	9	15	39	1.79
501622--501664	17	2.5	17	96	0	77	60	4	18	16	1.52
503123--503161	18	2.1	19	85	4	53	20	7	5	66	1.36
503348--503780	57	7.7	56	75	6	302	35	10	15	38	1.82
503417--503632	113	1.9	113	81	0	261	36	9	15	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504544--504585	17	2.5	17	92	0	66	11	23	28	35	1.91
509062--509438	187	2.0	190	95	4	690	28	22	16	32	1.95
514315--514343	6	5.0	6	91	8	51	0	17	0	82	0.66
514311--514343	11	3.1	11	91	4	50	0	18	0	81	0.68
514311--514343	17	2.0	16	94	5	57	0	18	0	81	0.68
514332--514391	23	2.5	25	81	5	70	8	15	11	65	1.47
516243--516609	57	6.5	56	75	9	194	34	11	16	37	1.85
516318--516627	113	2.7	114	77	8	274	35	11	17	36	1.85
516236--517393	56	20.7	56	70	7	283	35	10	15	38	1.82
516305--516628	170	1.9	168	80	2	371	34	11	17	36	1.85
517459--517618	56	2.9	54	73	15	128	36	7	15	40	1.76
517576--517704	56	2.3	56	81	4	154	35	10	13	40	1.79
517892--519071	56	21.0	57	69	11	283	35	10	16	38	1.82
518081--518345	113	2.3	114	81	3	293	34	9	17	38	1.82
518189--518440	114	2.2	114	79	7	273	34	11	15	38	1.82
519176--519333	56	2.8	56	81	7	153	38	8	13	39	1.75
519287--519410	56	2.2	56	82	0	149	33	11	15	40	1.83
519602--520595	56	17.9	55	69	12	263	34	10	16	37	1.84
518851--519859	428	2.3	429	78	5	1016	35	10	15	37	1.82
519603--520389	56	14.0	56	72	8	456	34	11	16	37	1.85
520841--520996	56	2.8	57	80	3	174	39	10	16	33	1.84
521611--522928	56	23.5	56	73	7	843	36	11	15	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522956--523138	93	2.0	93	80	4	208	34	11	15	38	1.83
523116--523375	56	4.6	56	75	4	200	34	8	18	39	1.80
523116--523375	112	2.3	112	78	7	240	34	8	18	39	1.80
523578--524073	57	8.8	57	70	12	253	33	9	15	41	1.80
523948--524055	55	2.0	55	81	0	126	34	6	16	42	1.74
529650--529776	6	21.3	6	73	15	79	2	14	3	80	0.94
529650--529773	22	5.7	20	69	21	72	2	14	3	79	0.95
529650--529776	50	2.6	47	77	16	141	2	14	3	80	0.94
531503--531543	21	2.0	21	95	0	73	26	19	21	31	1.97
531987--532061	24	3.2	24	63	30	63	32	18	4	45	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14