genome.fa.s8150.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008150.1 Hibiscus syriacus cultivar Beakdansim tig00110716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3012591

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1639 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2858571--2858615	2	22.5	2	100	0	90	51	0	0	48	1.00
2858841--2858905	2	32.0	2	90	3	103	50	3	0	46	1.17
2863303--2863665	131	2.8	130	80	7	394	33	11	15	38	1.84
2865631--2865733	16	5.8	18	79	6	106	17	19	33	30	1.95
2865628--2865680	18	2.8	19	75	18	56	18	20	28	32	1.97
2865985--2866029	2	23.0	2	90	4	74	46	0	0	53	1.00
2870593--2870748	64	2.4	64	84	4	181	33	19	19	27	1.96
2871318--2871386	18	3.7	19	83	9	97	17	21	28	31	1.96
2871644--2871672	2	14.5	2	100	0	58	48	0	0	51	1.00
2873238--2873276	20	2.0	20	84	0	51	35	23	7	33	1.83
2874898--2875197	133	2.3	134	87	2	419	30	22	18	29	1.97
2875859--2876062	46	4.4	46	86	1	257	23	19	13	43	1.87
2876044--2876248	60	3.4	60	91	0	338	26	22	13	36	1.92
2880545--2880602	29	2.0	29	83	10	73	34	3	15	46	1.63
2881152--2881229	39	2.0	39	92	0	129	25	21	26	25	2.00
2881155--2881228	18	3.9	18	74	10	67	24	21	28	25	1.99
2881934--2881980	12	4.1	12	78	10	53	25	23	14	36	1.93
2881931--2881979	22	2.2	22	85	0	62	22	24	14	38	1.91
2890602--2890805	46	4.4	46	86	0	273	25	21	11	42	1.86
2890787--2890992	60	3.4	60	91	0	340	25	23	14	37	1.92
2891798--2891862	3	21.7	3	100	0	130	33	0	0	66	0.92
2901224--2901278	3	18.7	3	85	10	78	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2902286--2902350	30	2.2	30	100	0	130	23	15	9	52	1.71
2906452--2906486	18	1.9	18	88	0	52	22	2	5	68	1.24
2906574--2906607	17	2.0	17	88	0	50	52	0	0	47	1.00
2907743--2907853	51	2.2	51	87	4	161	35	4	19	40	1.72
2907820--2907882	31	2.0	31	93	0	108	33	3	22	41	1.70
2907769--2907935	82	2.0	82	88	2	246	33	4	22	40	1.73
2907851--2908002	51	3.0	51	86	5	227	28	5	23	42	1.76
2907735--2907986	133	1.9	133	87	3	373	32	4	21	41	1.74
2907851--2908035	102	1.8	101	82	9	241	31	6	21	41	1.78
2918604--2918658	18	3.2	18	70	19	55	30	7	20	41	1.79
2918603--2918676	33	2.2	33	90	9	116	31	8	17	43	1.78
2920687--2920718	2	16.0	2	100	0	64	50	0	0	50	1.00
2922709--2922751	22	2.0	22	86	4	61	44	9	25	20	1.81
2922709--2922764	22	2.7	21	81	8	60	39	8	28	23	1.85
2923241--2923531	138	2.1	138	89	1	433	28	12	17	41	1.86
2929330--2929398	27	2.5	27	86	9	86	47	5	21	24	1.72
2932575--2932652	39	2.0	39	87	2	111	37	21	23	17	1.94
2932547--2932654	40	2.7	39	77	2	117	33	23	24	19	1.97
2932970--2932994	12	2.1	12	100	0	50	56	20	0	24	1.43
2938847--2938910	32	2.0	32	96	0	119	42	9	14	34	1.77
2938848--2938903	16	3.5	15	72	27	53	41	7	14	37	1.73
2938709--2939045	171	2.0	170	87	5	482	31	13	13	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2938891--2939204	141	2.2	139	82	6	350	29	14	12	43	1.81
2944396--2944580	68	2.9	64	74	8	189	32	17	9	39	1.83
2944523--2944890	102	3.6	102	91	1	596	33	20	11	34	1.88
2944882--2944911	15	2.0	15	100	0	60	60	6	6	26	1.47
2945462--2945741	152	1.8	152	87	4	413	38	13	19	28	1.90
2954324--2954356	13	2.5	13	95	5	57	42	0	0	57	0.98
2955907--2956114	75	2.8	75	85	2	256	24	30	23	21	1.99
2962576--2962629	2	27.0	2	100	0	108	50	0	0	50	1.00
2964226--2964289	31	2.1	31	100	0	128	39	6	21	32	1.79
2966954--2967107	43	3.5	43	70	15	136	37	18	19	25	1.94
2966961--2967123	89	1.8	89	89	0	236	37	18	17	26	1.93
2967132--2967223	36	2.6	37	86	6	127	44	20	16	18	1.87
2967402--2967435	13	2.5	14	90	9	61	47	0	0	52	1.00
2970646--2970698	23	2.3	22	81	9	61	50	1	1	45	1.23
2970713--2970746	17	2.0	17	88	11	52	64	0	5	29	1.17
2970752--2970784	16	2.1	16	94	0	57	63	0	0	36	0.95
2971965--2972019	3	18.0	3	82	17	69	67	0	0	32	0.91
2974156--2974492	114	3.0	114	94	0	577	31	20	15	32	1.94
2976757--2976796	21	1.9	21	89	0	62	2	15	2	80	0.93
2979218--2979263	6	7.7	6	82	0	56	52	6	17	23	1.68
2979218--2979263	18	2.6	18	92	0	74	52	6	17	23	1.68
2981511--2981568	21	2.7	21	81	7	55	46	3	5	44	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2981786--2981811	2	13.0	2	100	0	52	50	0	0	50	1.00
2981853--2981885	16	2.1	16	88	11	50	60	0	0	39	0.97
2987235--2987316	25	3.3	26	75	11	84	75	0	17	7	1.02
2987269--2987298	9	3.3	9	95	0	51	86	0	10	3	0.67
2987263--2987315	8	6.5	8	83	14	56	79	0	13	7	0.93
2993043--2993080	16	2.3	16	95	4	67	36	28	7	26	1.84
2996816--2997415	108	5.6	107	87	3	776	27	27	14	30	1.95
2996808--2997415	161	3.8	163	88	1	818	27	27	14	30	1.95
2996816--2997416	269	2.2	269	97	0	1121	27	27	14	30	1.95
2998343--2998395	7	6.5	8	77	18	56	9	13	0	77	0.99
2998342--2998395	25	2.2	26	83	10	76	9	12	0	77	0.98
2998350--2998407	25	2.3	25	81	0	80	12	15	0	72	1.12
3008065--3008102	16	2.3	16	95	4	67	36	28	7	26	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!