genome.fa.s8150.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008150.1 Hibiscus syriacus cultivar Beakdansim tig00110716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3012591

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1639 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1611375--1611894	134	3.9	133	82	4	480	30	19	18	31	1.96
1612687--1612857	45	3.8	44	75	5	101	42	19	16	21	1.89
1612824--1613979	42	28.8	38	76	11	806	41	14	17	26	1.88
1612824--1614014	80	14.8	80	76	10	886	40	15	17	26	1.89
1615952--1616141	8	23.1	8	67	25	62	4	19	1	74	1.05
1615962--1616135	7	23.7	7	70	15	93	4	18	1	75	1.02
1615963--1616141	15	11.1	15	69	24	100	4	19	1	74	1.05
1615965--1616135	32	5.5	29	71	21	100	4	19	1	75	1.03
1615959--1616071	40	2.7	42	78	11	126	2	19	1	76	1.00
1616046--1616102	22	2.5	23	82	5	62	5	21	1	71	1.14
1615997--1616150	26	6.0	27	69	22	75	5	18	0	74	1.05
1615959--1616150	50	3.9	49	74	18	152	5	18	1	75	1.05
1616027--1616152	65	1.9	65	80	6	148	7	19	0	73	1.11
1625769--1625820	3	17.7	3	82	4	61	65	1	3	28	1.21
1643917--1643955	21	1.9	20	84	5	51	28	15	20	35	1.93
1649770--1649803	2	17.0	2	93	0	59	50	2	0	47	1.16
1654997--1655021	13	1.9	13	100	0	50	24	16	16	44	1.86
1661603--1661653	4	12.0	4	76	19	50	70	0	0	29	0.87
1661597--1661655	17	3.3	18	75	20	61	72	0	0	27	0.84
1661604--1661653	13	3.8	13	81	10	57	72	0	0	28	0.86
1661605--1661653	26	2.0	25	88	8	73	71	0	0	28	0.86
1661666--1661704	16	2.3	17	86	13	62	43	5	0	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1661673--1661704	16	2.0	16	100	0	64	43	6	0	50	1.27
1661726--1661780	23	2.5	20	77	11	56	41	9	5	43	1.59
1661749--1661989	37	6.5	37	75	13	158	43	9	4	41	1.59
1661903--1661969	34	2.0	34	96	0	125	50	7	4	37	1.51
1664838--1665580	81	9.2	81	89	1	1136	28	21	11	39	1.88
1664838--1665580	321	2.3	322	91	2	1172	28	21	11	39	1.88
1666206--1666278	18	3.7	20	74	16	71	23	30	16	30	1.96
1666215--1666259	22	2.0	23	86	4	65	24	31	13	31	1.93
1666151--1666335	94	2.0	94	87	4	266	25	24	17	32	1.96
1678519--1678569	12	4.1	13	85	14	72	68	0	0	31	0.90
1678519--1678569	24	2.0	26	92	7	88	68	0	0	31	0.90
1678530--1678568	19	2.1	18	90	4	60	69	0	0	30	0.89
1678605--1678920	36	8.7	35	74	15	225	41	9	6	42	1.62
1678663--1678687	13	1.9	13	100	0	50	32	8	8	52	1.60
1678606--1678898	38	7.9	37	76	12	212	40	9	6	43	1.64
1678755--1678920	73	2.3	72	79	9	178	43	11	4	40	1.62
1679139--1679206	20	3.5	20	73	17	63	26	5	0	67	1.13
1679218--1679260	16	2.5	17	81	14	52	37	0	4	58	1.19
1679958--1680007	19	2.6	19	84	9	57	40	2	4	54	1.31
1680871--1680919	22	2.2	22	92	0	80	16	20	44	18	1.86
1681968--1682124	75	2.1	75	85	2	208	29	5	14	51	1.63
1682116--1682156	20	2.1	20	86	4	57	34	7	2	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1682126--1682169	20	2.3	19	81	11	54	36	4	0	59	1.18
1682231--1682255	12	2.1	12	100	0	50	8	52	16	24	1.70
1683539--1683587	16	3.1	17	74	11	50	12	6	48	32	1.65
1683567--1683600	3	11.3	3	93	0	50	5	0	61	32	1.20
1685401--1685456	3	19.3	3	90	7	89	33	0	0	66	0.92
1691781--1691819	20	1.9	21	89	5	62	66	7	10	15	1.43
1698405--1698445	19	2.1	19	86	13	57	73	0	17	9	1.09
1698375--1698462	9	9.2	9	69	15	52	77	1	13	7	1.04
1698366--1698478	28	4.1	27	67	21	65	75	0	14	9	1.10
1703104--1703146	15	2.8	15	85	3	50	55	2	2	39	1.25
1703339--1703696	177	2.0	178	88	2	531	34	10	11	43	1.74
1705039--1705072	15	2.3	15	89	0	50	41	0	2	55	1.15
1713263--1713375	60	1.9	60	85	3	156	36	13	10	39	1.79
1716385--1716421	15	2.6	14	87	8	56	16	10	8	64	1.47
1717229--1717527	139	2.1	138	85	3	395	30	10	14	44	1.78
1720100--1720165	33	2.0	33	100	0	132	24	18	30	27	1.98
1721815--1721851	18	2.1	18	94	0	65	48	10	13	27	1.75
1721822--1721889	29	2.4	29	87	2	102	39	16	13	30	1.86
1721822--1721885	28	2.2	28	88	2	92	42	17	12	28	1.85
1728472--1728509	20	1.9	20	88	0	58	23	36	26	13	1.91
1728472--1728514	20	2.2	20	84	8	54	20	32	32	13	1.92
1734072--1734134	33	1.9	33	83	6	83	25	26	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1734661--1734714	21	2.7	20	83	11	65	29	14	20	35	1.93
1734658--1734714	20	2.8	20	82	10	71	29	14	19	36	1.91
1737423--1737565	2	71.5	2	100	0	286	49	0	0	50	1.00
1749270--1749364	45	2.1	45	86	3	129	27	16	21	34	1.95
1749369--1749399	13	2.4	13	94	0	53	32	19	19	29	1.96
1750422--1750464	19	2.3	18	84	11	52	51	2	6	39	1.42
1751784--1751853	29	2.5	28	82	13	81	60	7	10	22	1.53
1753238--1753321	3	28.0	3	89	4	125	65	1	1	32	1.08
1753496--1753955	132	3.5	132	85	5	579	30	16	21	31	1.95
1753496--1754064	134	4.3	132	83	5	576	31	14	21	31	1.93
1761621--1761674	12	4.7	12	84	15	78	7	9	0	83	0.82
1761601--1761673	21	3.6	19	87	5	74	8	8	1	82	0.91
1761618--1761685	21	3.3	21	89	6	95	7	10	0	82	0.85
1761606--1761680	28	2.6	29	87	6	98	9	9	0	81	0.88
1761606--1761685	31	2.7	28	77	20	83	8	10	0	81	0.88
1761626--1761685	12	5.5	11	81	16	72	8	10	0	81	0.87
1767176--1767232	19	3.1	19	76	19	75	3	14	28	54	1.56
1767368--1767420	25	2.1	26	89	6	83	41	28	13	16	1.86
1772872--1773240	131	2.8	131	80	2	411	40	15	10	33	1.82
1773710--1773748	5	7.4	5	83	11	51	71	2	5	20	1.17
1773703--1773753	22	2.3	23	80	13	61	68	5	3	21	1.27
1773710--1773748	11	3.7	10	86	10	51	71	2	5	20	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775206--1775231	12	2.2	12	100	0	52	57	0	0	42	0.98
1789553--1789609	13	4.4	13	74	14	55	57	1	1	38	1.19
1789619--1789854	40	6.4	37	76	13	184	41	11	4	41	1.61
1789644--1789836	79	2.5	77	78	15	215	42	11	4	41	1.61
1803343--1803376	17	2.0	17	100	0	68	47	17	23	11	1.81
1804839--1804899	6	9.5	6	76	16	52	44	1	1	52	1.20
1807470--1807540	20	3.5	20	83	7	74	43	18	14	23	1.86
1807502--1808212	194	3.6	197	87	3	985	39	12	15	31	1.86
1807893--1807934	20	2.1	20	90	0	66	35	14	16	33	1.89
1809391--1809429	20	1.9	21	84	5	53	30	15	15	38	1.88
1809120--1809487	146	2.5	146	85	1	506	37	14	13	34	1.85
1809585--1809622	21	1.9	20	84	10	51	31	13	13	42	1.82
1809382--1810387	199	5.0	199	86	3	1301	39	13	13	33	1.84
1811299--1811520	111	2.0	111	91	1	365	31	11	13	44	1.79
1811954--1812435	111	4.3	111	91	2	754	32	11	11	44	1.78
1812868--1813572	111	6.3	111	89	1	1011	32	12	11	44	1.78
1811300--1813349	914	2.2	915	92	1	3452	35	10	11	42	1.75
1813762--1813830	30	2.2	30	85	15	95	34	5	17	42	1.73
1813771--1813830	30	2.0	30	93	6	104	33	6	16	43	1.74
1813910--1813967	21	2.8	21	97	0	107	20	37	18	22	1.94
1814048--1814108	21	3.0	21	80	4	79	22	19	29	27	1.98
1814029--1814108	41	2.0	41	87	5	117	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814029--1814102	20	3.7	20	82	7	87	21	21	25	31	1.98
1815325--1815370	18	2.5	19	85	3	67	52	4	13	30	1.59
1816602--1816660	29	2.0	30	90	6	93	33	5	15	45	1.68
1816740--1816797	21	2.8	21	86	7	91	22	39	18	18	1.92
1816740--1816833	42	2.2	41	85	10	120	23	35	20	21	1.96
1817035--1817074	20	1.9	22	90	10	66	37	37	10	15	1.80
1817669--1817706	13	2.9	13	92	0	58	18	39	21	21	1.93
1817690--1817749	20	2.9	19	75	17	66	23	31	21	23	1.98
1817677--1817748	13	5.3	13	73	18	58	22	31	22	23	1.98
1817770--1817843	20	3.7	20	80	7	87	21	24	24	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14