genome.fa.s8150.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008150.1 Hibiscus syriacus cultivar Beakdansim tig00110716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3012591

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1639 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279919--279962	14	3.1	14	75	18	54	61	2	2	34	1.21
281970--282024	26	2.1	27	90	10	87	36	0	1	61	1.06
285216--285257	22	2.0	22	85	4	59	42	2	0	54	1.13
285246--285318	25	2.9	26	82	13	82	50	1	1	46	1.18
285638--285678	21	1.9	22	90	5	66	51	0	0	48	1.00
285636--285688	21	2.6	19	80	16	61	49	0	0	50	1.00
287740--287796	27	2.1	27	100	0	114	40	7	7	45	1.58
291114--291156	15	2.9	15	96	0	77	58	6	16	18	1.60
291164--291253	43	2.1	43	97	0	171	53	8	22	15	1.69
298257--298312	20	2.8	20	97	0	103	39	14	3	42	1.63
298956--299000	23	2.0	23	86	0	63	60	13	11	15	1.60
298997--299035	10	3.9	10	86	0	51	82	0	17	0	0.68
303610--303662	21	2.5	21	81	6	72	20	26	18	33	1.96
303652--303703	21	2.5	21	81	3	61	38	19	25	17	1.93
303689--303826	41	3.4	41	83	6	163	35	24	17	22	1.95
303692--303806	20	5.7	20	82	6	124	33	26	18	22	1.97
305666--305713	18	2.7	18	93	0	87	27	45	12	14	1.81
306254--306299	20	2.3	20	88	0	65	36	26	21	15	1.93
306293--306383	33	2.8	33	89	0	137	48	19	17	14	1.81
306293--306389	19	5.6	19	67	22	70	46	19	18	15	1.84
306384--306440	14	3.7	14	75	20	60	10	15	22	50	1.74
306379--306459	33	2.5	33	97	0	153	13	18	19	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306398--306475	19	4.4	19	76	15	94	14	19	19	47	1.82
306462--306514	20	2.7	20	96	0	97	13	22	26	37	1.91
306462--306540	20	4.0	20	91	0	95	20	17	26	35	1.95
306878--306968	41	2.2	42	84	2	121	23	40	13	23	1.89
306881--306998	42	2.8	41	81	2	119	23	38	15	22	1.92
308378--308416	14	2.8	14	84	0	51	35	0	17	46	1.49
308512--308550	20	2.0	20	94	0	69	46	30	10	12	1.75
308556--308658	19	5.7	19	83	8	135	48	16	20	14	1.81
308677--308732	20	2.8	20	94	0	94	14	21	23	41	1.89
311010--311034	12	2.1	12	100	0	50	0	28	0	72	0.86
312061--312115	21	2.7	21	94	2	94	16	16	23	43	1.87
312007--312135	20	6.4	20	85	5	134	22	17	27	32	1.97
312022--312156	41	3.3	41	78	11	134	20	19	25	34	1.96
312041--312158	61	1.9	61	86	8	150	19	18	23	38	1.93
312167--312217	21	2.4	22	77	6	61	37	17	25	19	1.94
312586--312624	19	2.1	19	90	0	60	41	0	5	53	1.23
312646--312680	2	17.5	2	100	0	70	51	0	0	48	1.00
318276--318302	14	1.9	14	100	0	54	59	3	7	29	1.42
319378--319406	11	2.5	12	94	5	51	3	13	6	75	1.13
319377--319408	12	2.6	13	85	14	50	3	15	6	75	1.14
319652--319944	147	2.0	146	95	0	532	38	17	12	31	1.87
320328--320379	20	2.7	20	85	5	63	26	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327463--327512	2	25.0	2	100	0	100	50	0	0	50	1.00
329058--329115	3	19.0	3	82	3	71	63	3	0	32	1.11
329259--329709	76	5.9	76	97	0	839	32	21	22	22	1.98
329650--330205	185	3.0	185	98	0	1076	38	14	15	31	1.88
330082--330405	165	2.0	167	93	1	564	38	13	14	33	1.85
330908--330964	22	2.6	23	91	8	100	38	14	14	33	1.85
334989--335013	9	2.8	9	100	0	50	48	0	12	40	1.40
338471--338509	14	2.8	14	85	11	53	58	7	17	15	1.59
340725--340763	2	20.0	2	94	5	71	48	0	0	51	1.00
342308--342362	3	18.0	3	84	3	74	61	1	0	36	1.06
360950--360993	23	2.0	22	86	4	61	25	13	38	22	1.91
362564--362592	14	2.1	14	100	0	58	48	6	31	13	1.69
363513--363573	29	2.1	29	81	6	70	45	4	11	37	1.62
365991--366023	15	2.1	16	88	5	50	30	3	9	57	1.45
370949--371011	30	2.1	30	87	0	90	36	4	25	33	1.77
371252--371361	23	4.7	23	79	10	134	21	25	21	30	1.98
371973--372013	20	2.0	20	90	9	66	26	24	24	24	2.00
378110--378169	30	2.0	30	93	0	102	40	3	23	33	1.71
378413--378498	23	3.7	23	73	14	77	19	24	24	31	1.98
386965--387047	21	4.0	21	80	9	98	77	0	21	1	0.84
386970--387046	7	11.6	7	76	15	67	77	0	22	0	0.76
386970--387047	13	5.8	14	72	19	60	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386964--387054	40	2.2	40	83	9	105	78	0	19	2	0.86
386970--387048	35	2.4	34	91	6	126	78	0	21	0	0.75
386963--387044	27	3.0	28	77	12	82	75	0	23	1	0.87
389613--389649	14	2.6	14	100	0	74	45	0	21	32	1.52
390740--390792	21	2.5	21	84	0	61	30	18	24	26	1.98
393759--393824	30	2.2	30	86	0	87	36	19	6	37	1.77
398088--398126	11	3.5	11	82	0	51	10	23	28	38	1.87
400871--400919	25	2.0	25	91	0	80	14	10	40	34	1.79
401045--401077	16	2.1	16	94	5	59	78	0	0	21	0.75
401027--401072	24	1.9	24	82	8	58	73	4	0	21	1.00
401046--401097	23	2.3	23	80	3	61	71	1	1	25	1.07
401156--401184	2	14.5	2	100	0	58	51	0	0	48	1.00
401384--401423	20	2.1	19	85	4	53	32	0	2	65	1.06
401712--401744	16	2.1	16	88	11	50	27	0	0	72	0.85
401707--401760	23	2.4	23	81	9	58	31	0	1	66	1.02
402834--402858	7	3.6	7	100	0	50	44	0	0	56	0.99
403086--403128	16	2.7	16	85	7	52	51	0	9	39	1.34
407397--407460	22	2.8	22	85	4	83	31	21	14	32	1.93
408170--408250	22	3.6	22	91	1	126	30	24	13	30	1.94
412757--412814	22	2.6	22	91	2	89	31	18	13	36	1.90
423408--423524	56	2.1	57	86	1	164	32	15	11	41	1.82
429838--429880	14	3.2	14	87	6	63	34	0	2	62	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
433958--434016	24	2.4	24	81	10	66	52	0	8	38	1.32
434037--434071	18	1.9	18	88	0	52	42	0	8	48	1.33
441249--441303	19	2.8	19	71	13	58	32	0	1	65	1.03
441950--442008	24	2.5	24	83	2	66	23	13	16	45	1.83
442546--442570	2	12.5	2	100	0	50	48	0	0	52	1.00
446871--446920	20	2.5	20	76	3	55	22	18	22	38	1.94
450763--450840	33	2.4	33	80	8	88	48	1	14	35	1.52
452118--452486	55	6.6	55	86	4	449	34	17	10	37	1.84
452118--452485	112	3.3	111	88	2	508	34	17	10	36	1.85
452128--452492	167	2.2	167	88	3	529	34	18	10	36	1.86
452906--452953	18	2.5	20	86	6	64	25	29	12	33	1.92
456342--456389	23	2.1	23	96	0	87	20	27	25	27	1.99
461456--461495	21	2.0	20	90	5	62	42	12	15	30	1.83
462170--462223	28	1.9	28	88	0	81	38	9	24	27	1.86
462364--462448	23	3.8	22	81	6	82	16	25	24	32	1.96
462363--462452	24	4.0	22	80	9	101	17	25	24	32	1.97
462775--462822	21	2.3	21	77	0	51	33	6	8	52	1.57
465941--466372	216	2.0	216	98	0	828	29	24	19	26	1.98
467248--467880	55	11.6	55	85	6	808	34	16	12	36	1.87
467248--467880	112	5.8	111	85	6	814	34	16	12	36	1.87
468220--468269	20	2.5	20	100	0	100	26	28	16	30	1.96
475573--475633	23	2.6	24	78	19	58	50	1	0	47	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
475617--475696	8	10.5	8	70	15	53	52	1	0	46	1.08
475605--475651	22	2.1	23	88	4	69	44	2	0	53	1.12
475641--475696	23	2.4	23	88	5	78	55	1	0	42	1.10
475808--475880	23	3.1	22	80	5	65	52	4	0	43	1.20
476153--476183	13	2.3	14	94	5	55	51	6	3	38	1.44
485744--485781	19	2.0	20	89	5	60	28	7	13	50	1.69
486450--486489	4	10.0	4	100	0	80	0	25	0	75	0.81
488738--488783	25	1.9	23	91	8	74	17	6	0	76	1.00
488743--488803	29	2.1	29	81	9	70	16	11	0	72	1.13
496388--496483	14	6.7	14	72	4	75	38	11	8	41	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14