genome.fa.s8150.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008150.1 Hibiscus syriacus cultivar Beakdansim tig00110716_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3012591

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1639 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
803039--803141	54	1.9	54	87	0	152	33	14	15	35	1.88
803150--803520	54	6.9	53	83	4	447	32	14	16	36	1.89
803146--803543	108	3.7	108	88	1	555	32	14	16	36	1.89
804207--804248	21	2.0	22	95	4	77	42	14	19	23	1.87
804903--805102	75	2.7	75	92	0	319	26	27	26	20	1.99
806589--807174	298	2.0	291	95	2	883	40	15	24	19	1.90
811015--811069	18	3.1	18	92	2	85	45	23	30	0	1.53
813024--813048	4	6.2	4	100	0	50	24	0	0	76	0.80
814020--814086	24	2.6	25	80	15	75	22	1	4	71	1.12
815832--815878	22	2.0	22	88	8	67	29	17	27	25	1.97
817251--817322	23	3.2	23	80	3	85	22	20	22	34	1.97
821728--821758	2	15.5	2	100	0	62	51	0	0	48	1.00
822260--822327	23	3.0	23	84	0	91	17	25	25	32	1.97
824194--824241	18	2.7	18	93	0	78	35	16	22	25	1.95
830145--830193	24	2.0	24	100	0	98	28	20	24	26	1.99
830331--830394	27	2.3	28	89	2	94	21	6	23	48	1.73
834655--834744	21	4.3	21	82	0	99	36	15	13	34	1.87
835959--836038	35	2.5	31	82	13	83	60	5	0	35	1.19
836113--836150	17	2.2	17	95	0	67	28	0	7	63	1.23
836603--836758	60	2.6	60	85	6	201	28	19	16	34	1.94
836747--836819	31	2.4	31	97	0	137	30	30	10	28	1.91
837038--837098	31	2.0	30	84	6	79	36	16	18	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845370--845415	18	2.6	18	100	0	92	73	0	21	4	1.00
845352--845445	30	3.2	30	77	11	88	69	1	25	4	1.13
846686--846741	10	6.2	9	78	17	55	33	3	0	62	1.12
848005--848304	106	2.8	108	84	8	368	46	5	9	39	1.57
848353--848456	27	3.8	26	75	11	93	55	0	5	38	1.24
850511--850544	17	1.9	18	94	5	61	2	8	11	76	1.12
850845--850961	58	2.0	59	86	5	166	35	22	17	23	1.95
853276--853365	31	2.9	31	85	3	101	32	31	11	25	1.91
853295--853367	31	2.4	31	88	4	103	34	34	8	23	1.84
856604--856646	21	2.0	21	82	8	52	25	11	25	37	1.90
857611--857678	28	2.5	27	86	6	84	32	0	23	44	1.54
859585--859698	54	2.1	54	91	6	187	30	20	5	43	1.73
859605--859721	54	2.1	54	78	10	121	28	19	5	46	1.73
859821--859857	13	2.7	15	84	16	53	62	0	2	35	1.10
861716--861801	28	3.1	28	93	0	145	36	9	6	47	1.63
863436--863460	12	2.1	12	100	0	50	60	0	0	40	0.97
863443--863472	15	2.0	15	93	0	51	63	0	0	36	0.95
867169--867201	15	2.2	15	94	0	57	63	9	0	27	1.24
868762--868842	21	3.8	21	93	3	126	33	29	23	13	1.93
885757--885802	18	2.6	18	89	0	65	36	23	26	13	1.91
893346--893399	9	6.2	9	77	16	51	3	14	0	81	0.82
893344--893404	24	2.5	25	84	10	74	4	18	0	77	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905474--905507	16	2.2	16	89	5	52	61	8	0	29	1.26
905775--905806	2	16.0	2	93	0	55	46	0	3	50	1.17
905990--906050	3	20.0	3	80	9	70	60	0	4	34	1.18
907884--908018	31	4.4	31	84	5	166	45	7	2	44	1.47
908586--908634	25	1.9	26	88	12	75	44	4	16	34	1.66
911710--911800	22	4.0	22	77	9	76	60	4	0	35	1.17
911723--911768	10	4.2	12	78	15	55	67	0	0	32	0.91
911789--911843	22	2.6	21	72	16	51	52	3	1	41	1.29
920883--921079	100	2.0	100	95	0	358	36	13	14	35	1.85
922423--922587	61	2.7	60	80	1	177	40	6	20	33	1.77
922998--923050	16	3.2	16	73	21	56	43	0	18	37	1.51
924756--924861	39	2.7	39	82	7	126	40	16	5	36	1.73
924756--924861	40	2.7	39	85	4	133	40	16	5	36	1.73
924882--924986	39	2.7	39	93	0	183	42	9	9	38	1.70
924758--925054	137	2.2	134	81	4	355	42	13	6	37	1.71
924997--925619	58	10.8	57	82	6	641	43	12	7	37	1.71
925745--925953	45	4.6	45	79	5	206	38	16	9	34	1.82
929859--929939	20	4.1	20	78	6	85	13	29	34	22	1.92
933750--933789	21	1.9	21	85	10	55	35	10	2	52	1.48
936220--936246	6	4.5	6	100	0	54	81	0	0	18	0.69
937816--937851	17	2.2	16	90	5	54	50	0	8	41	1.33
938819--938872	28	1.9	28	88	0	81	29	14	5	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939585--939647	17	3.9	17	68	19	53	25	19	12	42	1.86
947552--947591	2	20.0	2	94	0	71	47	0	2	50	1.14
947846--947939	10	8.9	10	74	11	62	77	3	13	5	1.06
947838--947877	21	1.9	21	90	10	64	82	10	7	0	0.84
947895--947948	24	2.2	24	87	6	74	75	1	18	3	1.03
947846--947957	10	10.7	10	73	19	61	76	2	16	4	1.06
947895--947969	12	6.5	11	73	17	64	76	1	18	4	1.02
950046--950161	54	2.2	53	80	3	133	28	8	20	42	1.82
950856--951801	139	6.8	139	88	4	1333	36	17	20	26	1.94
950873--951801	275	3.4	276	88	3	1366	36	17	20	25	1.94
950872--951801	414	2.2	418	89	3	1387	36	17	20	25	1.94
956213--956246	16	2.1	17	88	5	52	41	17	2	38	1.65
956948--957017	21	3.2	20	73	15	59	40	24	12	22	1.89
957065--957123	23	2.7	22	78	5	57	37	22	13	27	1.91
957065--957114	23	2.2	23	88	0	73	36	22	14	28	1.92
961343--961398	21	2.7	21	77	0	67	32	30	19	17	1.95
961410--961499	21	4.3	21	68	0	54	40	22	14	23	1.90
967912--967948	19	2.0	19	89	5	58	21	35	27	16	1.94
972706--972745	20	2.0	20	90	4	64	55	7	0	37	1.29
973825--973868	21	2.0	23	82	8	56	27	11	2	59	1.44
975753--975810	20	2.9	20	92	0	89	20	25	36	17	1.94
975842--975909	20	3.7	20	73	18	74	16	27	38	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975847--975916	35	2.0	35	97	0	131	15	28	35	20	1.93
976106--976150	19	2.3	20	88	3	65	53	6	2	37	1.40
979272--979313	21	2.0	21	86	4	59	19	26	38	16	1.92
980676--980719	21	2.0	23	82	8	56	27	11	2	59	1.44
982662--982701	19	2.1	19	95	0	71	15	27	40	17	1.89
982957--982996	20	2.0	20	90	4	64	55	7	0	37	1.29
984729--984757	14	2.0	15	93	6	51	3	41	0	55	1.17
986110--986151	20	2.1	20	95	0	75	14	26	42	16	1.86
986413--986452	20	2.0	20	90	4	64	55	7	0	37	1.29
989571--989612	20	2.1	20	95	0	75	14	26	42	16	1.86
989870--989909	20	2.0	20	90	4	64	55	7	0	37	1.29
993330--993371	19	2.2	19	87	8	59	52	4	2	40	1.35
995533--995580	24	2.0	23	88	4	69	47	0	2	50	1.12
998834--998867	16	2.1	16	88	0	50	50	0	2	47	1.16
998905--998938	16	2.0	18	88	11	54	26	2	5	64	1.30
999015--999076	26	2.3	26	78	13	63	48	3	1	46	1.28
999402--999649	130	1.9	130	91	0	406	35	12	15	36	1.86
1000046--1000121	35	2.2	35	90	0	116	36	1	22	39	1.63
1010605--1010653	25	2.0	26	84	8	66	46	0	16	36	1.47
1014045--1014094	23	2.3	22	83	10	66	34	26	14	26	1.94
1014051--1014094	23	1.9	23	90	0	70	31	25	15	27	1.96
1017479--1017514	14	2.6	14	86	4	56	33	19	27	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1017513--1017550	14	2.7	14	91	0	58	26	21	28	23	1.99
1022489--1022515	13	2.1	13	100	0	54	44	22	18	14	1.86
1034385--1034474	6	14.3	6	79	15	85	76	1	17	4	1.01
1034391--1034473	13	5.9	14	74	20	75	75	1	18	4	1.04
1034385--1034477	31	2.9	30	81	15	116	77	1	17	4	0.99
1035476--1036192	140	5.2	140	80	6	770	34	15	21	29	1.94
1035474--1036121	264	2.4	268	81	5	743	34	14	21	30	1.92
1036304--1036346	3	14.7	3	80	4	52	41	0	0	58	0.98
1036304--1036346	17	2.4	18	88	7	70	41	0	0	58	0.98
1036313--1036354	17	2.3	18	80	16	50	47	2	0	50	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14