genome.fa.s8245.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008245.1 Hibiscus syriacus cultivar Beakdansim tig00110895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6601124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  33  of  33  ( 3922 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6471570--6472049	55	8.8	55	87	2	594	30	15	26	27	1.96
6471956--6472113	55	2.9	54	84	6	196	31	20	23	24	1.98
6479500--6479550	21	2.4	21	86	0	66	39	0	7	52	1.30
6479538--6479582	14	3.1	14	80	3	54	35	0	24	40	1.56
6479668--6479740	31	2.4	30	81	4	83	50	1	9	38	1.44
6483222--6483268	21	2.3	20	79	13	53	8	12	29	48	1.71
6486474--6486518	20	2.3	19	85	11	63	11	8	31	48	1.69
6487778--6487843	34	1.9	34	100	0	132	46	13	12	27	1.78
6490670--6490712	20	2.2	20	86	0	59	34	18	13	32	1.90
6491274--6491311	9	4.0	9	87	12	58	10	10	0	78	0.95
6491278--6491304	11	2.5	11	100	0	54	7	7	0	85	0.75
6491274--6491311	20	1.9	20	100	0	76	10	10	0	78	0.95
6498458--6498495	3	13.0	3	83	5	51	2	28	2	65	1.19
6499711--6499757	21	2.3	21	88	3	69	12	12	29	44	1.80
6499977--6500040	20	3.2	20	97	0	119	28	23	17	31	1.97
6501779--6501814	2	18.0	2	100	0	72	50	0	0	50	1.00
6508295--6508370	31	2.4	33	82	8	86	63	2	22	11	1.40
6510959--6511005	19	2.5	19	85	0	58	55	0	4	40	1.19
6511566--6512782	233	5.2	233	90	0	1776	32	17	17	32	1.93
6512290--6512396	42	2.6	40	82	5	133	29	21	22	26	1.99
6511288--6512782	465	3.2	465	85	4	1854	32	17	17	32	1.93
6512357--6513125	382	2.0	383	87	1	1123	32	16	16	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6513628--6513669	5	8.0	5	89	10	66	0	19	0	80	0.70
6513627--6513669	11	4.0	11	85	14	63	0	18	0	81	0.69
6513628--6513669	16	2.6	16	100	0	84	0	19	0	80	0.70
6518344--6518368	7	3.6	7	100	0	50	28	32	16	24	1.96
6518451--6518547	36	2.7	36	96	0	176	41	14	17	26	1.88
6525938--6526040	36	2.9	36	91	0	170	42	14	15	27	1.86
6529792--6529830	19	2.2	17	86	9	51	53	0	20	25	1.45
6530521--6530561	21	2.0	21	85	9	57	31	2	19	46	1.63
6532118--6532208	23	4.0	23	86	0	128	26	25	19	28	1.99
6532118--6532208	46	2.0	46	91	0	146	26	25	19	28	1.99
6533085--6533124	20	2.0	21	90	5	64	32	25	7	35	1.84
6533683--6533716	4	8.5	4	100	0	68	0	26	0	73	0.83
6535803--6535854	15	3.5	15	89	0	77	38	7	21	32	1.82
6535803--6535866	30	2.1	30	85	0	83	37	10	20	31	1.87
6535993--6536054	25	2.5	25	83	0	79	24	17	24	33	1.96
6536391--6536690	43	7.0	43	77	5	234	37	18	20	23	1.94
6536419--6536662	42	5.7	42	75	6	170	37	18	21	22	1.94
6536391--6536733	85	4.0	84	75	8	255	36	18	19	25	1.94
6545332--6545714	41	9.3	41	74	11	255	31	18	18	31	1.95
6545332--6545583	83	3.0	82	83	2	308	31	17	19	32	1.95
6545368--6545628	124	2.1	122	80	6	294	32	17	18	30	1.95
6546300--6546333	16	2.1	17	88	5	52	47	8	14	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6552397--6552463	15	4.5	15	79	7	64	38	7	17	35	1.78
6552594--6552667	25	3.0	25	81	0	85	27	22	20	29	1.98
6558740--6558901	49	3.3	48	84	3	216	29	20	15	34	1.94
6558735--6558958	98	2.3	99	89	0	324	29	22	13	34	1.93
6558740--6558925	49	3.8	49	78	9	182	29	21	15	33	1.94
6558979--6559152	49	3.5	49	77	1	195	31	22	13	32	1.93
6558881--6559041	83	1.9	84	87	1	234	27	21	14	36	1.92
6558785--6559140	182	2.0	182	87	2	518	28	21	14	35	1.93
6558961--6559178	99	2.2	97	87	3	312	30	21	12	35	1.90
6558967--6559178	49	4.3	49	73	5	176	30	21	11	35	1.90
6559834--6559879	22	2.1	22	95	0	83	28	23	2	45	1.65
6564784--6564892	46	2.4	46	82	0	128	21	22	12	44	1.86
6564908--6565360	49	9.2	49	76	3	369	31	21	13	33	1.92
6564890--6565360	98	4.8	98	87	2	640	31	21	13	34	1.92
6564903--6565360	197	2.3	196	89	1	677	31	21	13	34	1.92
6565869--6565917	21	2.5	19	87	9	64	34	20	14	30	1.92
6567089--6567119	3	10.0	3	93	6	53	67	0	0	32	0.91
6567089--6567170	19	4.3	19	75	3	65	54	0	2	42	1.13
6567838--6567890	22	2.5	21	85	8	72	54	0	0	45	0.99
6571198--6571674	85	5.6	85	80	3	462	27	15	20	35	1.93
6571253--6571681	167	2.5	168	82	6	496	27	16	20	35	1.94
6571198--6571674	252	1.9	253	80	3	557	27	15	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6571259--6571681	84	5.0	85	80	5	446	27	16	20	34	1.94
6587134--6587213	38	2.1	38	88	4	117	48	10	18	22	1.77
6587950--6588015	26	2.5	27	95	2	116	42	12	12	33	1.79
6589722--6589779	29	2.0	30	82	3	73	51	1	3	43	1.28
6589827--6589872	21	2.3	20	82	17	60	34	0	2	63	1.07
6593470--6593524	26	2.1	26	100	0	110	12	14	34	38	1.84
6595838--6595886	19	2.6	19	93	0	80	32	12	28	26	1.92
6596235--6596387	59	2.6	59	97	0	288	32	11	19	36	1.87
6596730--6597184	68	6.7	68	94	0	741	32	15	23	29	1.95
6597135--6597533	81	4.9	81	88	1	566	36	11	23	28	1.90
6597506--6597562	29	2.0	29	89	6	89	47	8	22	21	1.78
6598541--6598689	74	2.0	75	88	3	221	32	20	18	28	1.97
6599026--6599072	12	3.9	12	85	0	58	31	6	23	38	1.80
6599088--6599161	29	2.6	29	97	2	141	43	16	21	18	1.88
6599246--6599338	15	6.2	15	89	0	150	15	20	32	32	1.93
6599246--6599338	45	2.1	45	95	0	168	15	20	32	32	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33

The End!