genome.fa.s8245.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008245.1 Hibiscus syriacus cultivar Beakdansim tig00110895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6601124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  31  of  33  ( 3922 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6044948--6045010	19	3.3	19	91	4	108	47	22	19	11	1.80
6044853--6045010	20	8.7	19	71	17	111	43	21	21	13	1.86
6045638--6045725	20	4.3	20	78	8	97	25	15	22	36	1.94
6045796--6045836	21	2.0	21	85	0	55	34	31	17	17	1.93
6046204--6046647	230	1.9	230	96	0	816	30	27	15	26	1.96
6049811--6049877	21	3.0	21	74	8	62	35	5	2	55	1.40
6051326--6051457	62	2.1	61	78	12	135	68	8	3	18	1.30
6052624--6052664	20	2.0	20	90	0	64	56	0	2	41	1.13
6053451--6053554	45	2.3	45	81	6	122	34	16	17	31	1.92
6056530--6056628	10	10.3	9	77	12	81	17	28	26	28	1.97
6056531--6056628	19	5.1	19	78	14	78	16	28	26	28	1.97
6056530--6056628	29	3.4	28	83	5	117	17	28	26	28	1.97
6056624--6056662	17	2.3	17	95	0	69	17	46	20	15	1.84
6063826--6063957	9	13.8	9	68	12	66	18	25	28	28	1.98
6063826--6063961	19	7.1	19	85	9	161	18	25	27	27	1.98
6063827--6063883	21	2.9	20	87	10	82	14	28	26	31	1.94
6063826--6063882	30	1.9	30	89	7	89	15	26	26	31	1.96
6063959--6064014	17	3.3	17	97	0	103	17	44	23	14	1.85
6073154--6073201	21	2.3	21	92	0	78	54	4	20	20	1.61
6073161--6073203	21	2.0	21	100	0	86	51	4	18	25	1.66
6082044--6082068	2	12.5	2	100	0	50	52	48	0	0	1.00
6086272--6086325	17	3.2	17	72	0	54	31	0	3	64	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6087856--6087903	21	2.3	21	88	0	69	25	37	12	25	1.91
6087907--6088000	21	4.5	21	90	5	136	18	34	26	21	1.96
6088521--6088627	34	3.1	34	86	0	142	57	3	1	37	1.28
6088992--6089598	128	4.7	128	94	0	1063	33	21	23	21	1.97
6089679--6089719	8	5.2	8	82	5	57	36	29	0	34	1.58
6091159--6091200	18	2.3	18	95	0	75	33	11	4	50	1.60
6093042--6093102	26	2.3	26	82	0	68	32	3	11	52	1.54
6093145--6093187	11	4.0	11	87	6	61	48	0	2	48	1.14
6093145--6093186	21	2.0	21	90	0	66	50	0	2	47	1.14
6093961--6094003	21	2.0	22	86	4	61	30	37	18	13	1.90
6094750--6094810	22	2.8	22	90	5	88	24	24	22	27	2.00
6098453--6098533	30	2.8	29	77	15	85	13	7	13	65	1.46
6098573--6098650	29	2.6	30	74	8	79	25	8	7	57	1.56
6103265--6103293	12	2.4	12	100	0	58	34	31	13	20	1.92
6106683--6106739	21	2.7	23	76	15	59	21	19	0	59	1.38
6106703--6106732	14	2.1	14	100	0	60	13	20	0	66	1.24
6111160--6111784	136	4.6	136	91	1	950	34	17	21	25	1.96
6111158--6111784	271	2.3	270	90	1	986	34	18	21	25	1.96
6112410--6112501	45	2.0	45	100	0	184	16	45	25	13	1.83
6113497--6113579	30	2.8	30	80	10	98	13	7	15	63	1.49
6114155--6114185	10	3.1	10	95	0	53	19	12	0	67	1.22
6115109--6115282	63	2.9	61	79	5	190	17	17	14	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6119170--6119220	21	2.4	21	90	0	75	31	5	35	27	1.81
6125773--6125805	2	16.5	2	100	0	66	51	0	0	48	1.00
6131753--6131801	20	2.4	20	83	13	64	51	0	2	46	1.12
6134808--6134869	3	20.7	3	77	6	63	59	0	4	35	1.19
6134808--6134869	24	2.6	24	85	10	83	59	0	4	35	1.19
6135033--6135594	139	4.1	139	87	2	756	26	16	27	30	1.97
6135596--6135807	65	3.3	65	91	0	334	40	16	16	26	1.89
6135659--6135782	36	3.6	36	68	14	118	40	18	16	24	1.91
6135702--6135802	29	3.2	29	69	17	94	44	14	14	25	1.84
6135596--6135847	65	3.9	65	88	1	326	42	16	15	26	1.87
6135759--6135995	100	2.4	100	84	3	271	42	10	12	35	1.77
6135851--6136042	100	1.9	100	91	2	314	42	7	14	35	1.74
6136075--6136187	36	3.1	37	78	3	122	39	13	14	32	1.84
6136083--6136152	37	1.9	37	85	2	97	42	12	14	30	1.83
6139187--6139219	11	2.8	12	86	9	50	0	18	0	81	0.68
6139171--6139249	25	3.1	25	73	24	76	2	20	2	74	1.05
6139164--6139215	10	5.2	10	78	0	50	0	19	1	78	0.84
6139180--6139266	27	3.4	27	78	13	94	3	21	3	71	1.16
6139180--6139266	25	3.4	24	71	24	63	3	21	3	71	1.16
6143892--6143935	15	2.9	15	77	12	54	0	22	9	68	1.18
6144565--6144635	3	22.7	3	77	8	70	57	1	5	35	1.31
6146286--6146333	25	1.9	25	86	0	69	16	27	8	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6148705--6148777	30	2.5	29	78	8	76	38	12	1	47	1.50
6149903--6149950	25	2.0	25	83	4	62	56	0	6	37	1.25
6152335--6152402	30	2.3	30	94	5	120	29	20	10	39	1.86
6153382--6153410	11	2.6	11	100	0	58	27	17	20	34	1.95
6156931--6156956	13	2.0	13	100	0	52	53	7	7	30	1.57
6157941--6157971	15	2.1	15	93	0	53	38	12	0	48	1.42
6159656--6159694	21	1.9	21	89	5	62	20	23	23	33	1.97
6159685--6159724	19	2.1	19	90	0	62	20	22	30	27	1.98
6159723--6159767	5	8.8	5	81	13	56	22	53	20	4	1.63
6159730--6159774	22	2.0	22	95	0	81	20	51	20	8	1.73
6166951--6166989	19	2.1	19	95	0	69	20	25	28	25	1.99
6166988--6167028	5	7.8	5	84	10	55	19	53	21	4	1.63
6166987--6167035	22	2.2	22	96	0	89	20	48	20	10	1.78
6169069--6169120	20	2.5	21	78	9	54	28	0	3	67	1.08
6171000--6171128	32	4.0	32	76	6	100	31	25	25	17	1.97
6175933--6175961	14	2.0	15	93	6	51	48	6	20	24	1.74
6178113--6178153	18	2.3	18	87	4	57	34	0	2	63	1.08
6182118--6182147	14	2.1	14	100	0	60	0	66	0	33	0.92
6185807--6185838	2	16.5	2	93	6	57	50	0	0	50	1.00
6185808--6185888	24	3.2	26	72	16	71	54	0	0	45	0.99
6185850--6185889	19	2.1	19	85	0	53	55	0	0	45	0.99
6185888--6185953	23	2.8	24	81	4	71	25	46	13	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6185888--6185953	12	5.6	12	83	3	71	25	46	13	13	1.80
6189520--6189558	17	2.3	17	95	0	69	41	25	17	15	1.89
6192653--6192707	5	11.0	5	75	14	51	50	0	1	47	1.11
6193235--6193328	48	2.0	48	93	0	161	44	4	2	48	1.34
6194158--6194192	13	2.7	13	95	0	61	40	28	11	20	1.87
6196003--6196166	2	85.5	2	73	18	118	40	0	4	54	1.22
6196003--6196166	39	4.1	39	80	13	160	40	0	4	54	1.22
6196068--6196181	32	3.7	30	78	14	108	39	0	3	57	1.16
6196061--6196181	16	7.0	16	71	18	75	38	0	3	57	1.15
6195999--6196181	18	9.9	18	73	19	123	39	0	4	56	1.19
6200525--6200907	190	2.0	191	97	2	725	32	25	26	15	1.96
6201067--6201135	26	2.8	25	84	6	95	63	15	14	5	1.48
6201067--6201145	26	3.0	26	85	5	88	63	15	13	7	1.51
6202108--6202225	50	2.4	49	81	9	143	69	0	10	19	1.22
6202886--6202932	23	2.0	23	87	0	67	40	6	21	31	1.78
6202846--6203008	87	1.9	87	96	0	299	41	11	14	31	1.82
6203030--6203532	200	2.5	198	85	5	676	31	16	13	38	1.88
6206922--6207223	150	2.0	150	89	3	457	34	13	10	40	1.80
6206719--6207434	349	2.1	347	84	4	931	32	15	12	40	1.84
6210532--6211683	199	5.7	199	85	4	1496	32	16	13	37	1.88
6212038--6212086	19	2.6	19	96	0	89	55	10	2	32	1.45
6213803--6213846	21	2.1	21	91	0	70	13	31	11	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6215561--6215634	19	3.8	19	68	10	60	35	16	2	45	1.61
6216218--6216707	182	2.7	181	89	1	725	27	16	14	40	1.88
6217324--6217357	17	1.9	17	88	5	50	29	0	20	50	1.49
6217529--6217554	5	5.2	5	100	0	52	61	0	0	38	0.96
6218077--6218170	48	2.0	48	95	0	170	45	4	2	47	1.34
6218497--6218526	15	2.0	15	93	0	51	56	0	3	40	1.16
6219125--6219156	13	2.4	14	90	10	50	65	3	0	31	1.08
6220013--6220261	124	2.0	124	100	0	498	34	11	17	36	1.86
6220508--6220689	2	99.5	2	68	22	71	38	0	3	58	1.15
6220529--6220704	5	35.8	5	70	17	102	38	0	2	59	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33