genome.fa.s8245.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008245.1 Hibiscus syriacus cultivar Beakdansim tig00110895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6601124

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  8  of  33  ( 3922 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1370880--1370904	12	2.1	12	100	0	50	0	28	0	72	0.86
1371686--1371718	12	2.8	12	90	4	50	39	6	39	15	1.72
1371917--1371968	21	2.5	21	87	3	70	38	17	23	21	1.93
1371954--1372045	41	2.3	40	84	1	121	38	21	17	22	1.93
1371953--1372044	20	4.6	20	73	2	85	38	21	18	21	1.94
1372258--1372345	20	4.4	20	75	5	97	38	21	21	18	1.93
1373997--1374089	42	2.2	42	80	1	105	22	15	38	23	1.92
1374433--1374518	20	4.3	20	86	1	111	38	23	23	15	1.92
1374433--1374559	33	3.4	39	76	10	113	42	22	20	14	1.88
1374492--1374550	19	3.4	19	68	22	65	47	20	16	15	1.83
1374508--1374566	14	3.9	14	74	20	55	49	23	15	11	1.77
1374492--1374571	33	2.4	33	95	0	142	47	22	17	12	1.81
1374578--1374707	19	7.6	19	70	23	119	12	19	21	46	1.82
1374600--1374691	14	5.9	14	72	22	76	10	17	22	48	1.78
1374583--1374707	33	3.8	33	98	0	241	12	18	21	48	1.80
1374692--1374735	20	2.2	20	84	4	54	20	25	18	36	1.95
1375287--1375334	18	2.7	18	93	0	87	14	12	45	27	1.81
1376666--1376705	20	2.0	20	85	0	53	37	25	20	17	1.94
1376968--1377011	22	2.0	22	95	0	79	18	15	45	20	1.85
1377178--1377315	41	3.4	41	78	2	161	23	15	25	35	1.94
1377198--1377311	20	5.7	20	78	6	104	23	16	27	32	1.96
1377306--1377436	21	6.3	21	96	0	228	22	22	15	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1377426--1377478	21	2.5	22	78	6	65	32	18	28	20	1.97
1378595--1378699	50	2.1	50	90	0	165	48	8	0	42	1.33
1381445--1381512	22	3.0	22	95	2	118	58	5	1	33	1.31
1385354--1385433	10	8.1	10	75	17	51	36	1	8	53	1.40
1385335--1385405	36	2.0	36	94	0	124	28	1	14	56	1.47
1385390--1385423	2	17.0	2	93	0	59	47	0	0	52	1.00
1385556--1385580	2	12.5	2	100	0	50	48	0	0	52	1.00
1385891--1385971	3	27.7	3	79	9	87	38	0	0	61	0.96
1385887--1385979	12	7.8	12	77	15	54	38	0	0	61	0.96
1386441--1386482	15	2.8	15	89	7	59	76	2	21	0	0.90
1386441--1386482	20	2.1	20	86	8	59	76	2	21	0	0.90
1387365--1387581	109	2.0	107	81	7	251	38	8	8	43	1.67
1391393--1391424	15	2.1	15	94	0	55	25	18	9	46	1.79
1398755--1398796	9	4.6	9	90	3	66	85	0	14	0	0.59
1398750--1398796	18	2.5	20	82	13	71	82	0	17	0	0.66
1398757--1398795	16	2.4	16	91	4	60	84	0	15	0	0.62
1399109--1399153	16	2.8	16	83	10	56	28	8	6	55	1.56
1399922--1400121	83	2.4	83	94	0	337	30	13	20	36	1.90
1400931--1401597	113	5.9	113	93	1	1084	35	14	17	31	1.91
1400931--1401613	341	2.0	339	92	0	1141	35	15	18	31	1.91
1401854--1401934	3	27.7	3	79	9	87	38	0	0	61	0.96
1401850--1401942	12	7.8	12	77	15	54	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1402405--1402446	15	2.8	15	89	7	59	76	2	21	0	0.90
1402405--1402446	20	2.1	20	86	8	59	76	2	21	0	0.90
1403324--1403540	109	2.0	107	80	7	242	38	8	8	44	1.65
1412100--1412160	6	9.5	6	79	13	68	21	14	14	49	1.79
1412100--1412158	26	2.3	26	100	0	118	22	15	15	47	1.82
1412100--1412158	20	3.0	20	78	14	68	22	15	15	47	1.82
1415266--1415314	17	2.9	17	84	3	64	85	4	8	2	0.79
1415268--1415365	21	4.4	22	75	11	85	80	2	16	1	0.86
1415269--1415366	8	11.5	8	75	17	65	80	2	16	1	0.86
1415280--1415350	14	4.9	14	77	8	63	83	2	14	0	0.77
1415268--1415366	33	3.0	34	75	20	93	80	2	16	1	0.85
1417443--1418184	43	17.3	43	79	5	698	27	12	30	29	1.93
1417446--1418177	86	8.5	86	79	6	815	27	12	30	29	1.93
1417335--1418223	257	3.5	257	92	0	1433	27	13	29	29	1.94
1418308--1418558	91	2.8	90	88	1	387	25	17	22	33	1.96
1418704--1418789	41	2.1	41	82	4	102	29	17	20	32	1.96
1418983--1419044	21	3.2	21	69	21	62	30	19	12	37	1.89
1418981--1419131	73	2.1	72	85	6	205	29	21	11	37	1.89
1418981--1419131	37	4.1	36	84	2	185	29	21	11	37	1.89
1430820--1430961	65	2.2	65	81	10	159	28	18	20	33	1.96
1432000--1432098	20	4.8	20	82	13	110	24	34	19	22	1.96
1434609--1434648	21	1.9	21	94	0	71	32	10	7	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1434870--1435013	21	6.7	21	82	10	159	22	38	18	20	1.94
1434870--1435013	43	3.3	43	88	6	204	22	38	18	20	1.94
1454919--1454952	16	2.0	17	88	11	52	64	0	26	8	1.22
1454999--1455032	7	4.7	7	85	7	50	76	0	14	8	1.01
1454997--1455045	15	3.3	15	85	2	64	75	0	16	8	1.03
1455468--1455819	177	2.0	174	96	3	652	28	14	13	43	1.83
1456489--1456599	36	3.0	37	90	1	170	37	18	20	22	1.94
1456616--1457035	55	7.6	54	83	5	393	29	16	25	28	1.97
1456616--1457036	110	3.8	109	84	4	465	28	17	25	28	1.97
1456601--1456976	165	2.3	165	85	6	489	28	15	25	30	1.96
1456660--1457037	165	2.3	165	85	4	478	28	17	25	28	1.97
1460528--1460659	7	18.1	7	68	14	63	75	4	3	16	1.09
1460621--1460658	10	3.9	10	93	6	69	81	7	0	10	0.87
1460621--1460658	19	2.0	20	94	5	69	81	7	0	10	0.87
1460559--1460659	45	2.3	46	81	10	113	77	4	3	13	1.08
1462981--1463033	18	2.9	18	85	0	70	22	20	18	37	1.94
1465253--1465299	24	2.0	24	86	0	67	14	12	17	55	1.70
1465518--1465565	23	2.1	23	84	0	60	14	10	16	58	1.63
1465609--1465642	14	2.4	14	90	9	52	11	23	14	50	1.76
1476581--1476610	12	2.4	13	88	11	53	53	0	0	46	1.00
1479098--1479303	42	4.8	42	86	3	252	33	22	24	19	1.97
1479893--1479944	22	2.4	22	96	0	95	40	21	17	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1480179--1480413	29	8.1	29	83	4	237	40	20	6	33	1.78
1480444--1480477	13	2.6	13	85	0	50	23	14	44	17	1.86
1484782--1484829	17	2.8	17	78	12	53	31	2	6	60	1.33
1487286--1487589	152	2.0	152	100	0	608	31	9	25	33	1.87
1494055--1494134	40	2.0	40	100	0	160	22	20	20	37	1.94
1495736--1495914	54	3.3	54	85	3	209	35	18	15	30	1.92
1504577--1504623	21	2.2	22	84	3	60	25	31	21	21	1.98
1505193--1505258	22	3.0	22	86	0	87	28	24	21	25	1.99
1508775--1508927	54	2.8	54	85	3	173	37	17	14	30	1.90
1508805--1508927	54	2.3	54	91	0	192	37	17	13	30	1.89
1510564--1510624	27	2.4	25	78	10	68	45	3	4	45	1.41
1510578--1510629	27	1.9	27	92	0	86	42	5	5	46	1.51
1510589--1510810	38	6.1	36	82	10	213	45	4	5	44	1.48
1510884--1510917	14	2.3	15	90	5	52	14	11	0	73	1.10
1515013--1515208	95	2.1	94	81	5	234	32	17	18	31	1.94
1516101--1516571	110	4.3	110	87	1	626	35	22	17	24	1.95
1516689--1517112	84	5.0	84	79	2	463	30	26	19	23	1.98
1516734--1517115	169	2.3	167	89	1	566	31	25	19	24	1.98
1517298--1517327	15	2.0	15	100	0	60	20	26	20	33	1.97
1517770--1518128	38	9.8	36	80	11	331	45	4	6	44	1.48
1517846--1518171	38	9.2	33	73	16	119	46	3	5	44	1.43
1517848--1518164	68	4.5	69	76	15	238	47	3	5	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1520923--1520965	22	1.9	23	90	4	70	37	2	2	58	1.24
1521439--1521580	67	2.1	68	94	4	250	29	12	16	41	1.85
1521783--1521874	30	3.0	30	83	3	103	48	13	11	26	1.76
1526511--1526555	23	2.0	23	90	0	72	35	28	17	17	1.93
1531533--1531576	23	2.0	23	81	4	54	43	25	4	27	1.74
1531538--1531612	23	3.3	23	84	0	78	37	25	14	22	1.92
1542048--1542748	288	2.4	288	95	1	1244	28	21	12	37	1.90
1542516--1542613	42	2.4	42	75	1	99	32	14	13	39	1.84
1544429--1544497	21	3.3	21	87	4	104	47	13	39	0	1.42
1544429--1544498	9	6.6	11	70	23	53	48	12	38	0	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33