Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008252.1 Hibiscus syriacus cultivar Beakdansim tig00110904_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2928487

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1474 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2886739--2887483
55
13.5
55
77
3
649
32
19
20
27
1.97
2886734--2887478
110
6.8
110
79
3
728
32
19
20
27
1.97
2890535--2890588
22
2.5
21
79
5
54
31
12
18
37
1.89
2891621--2891658
2
19.0
2
100
0
76
50
0
0
50
1.00
2891744--2891776
17
1.9
17
88
11
50
39
3
0
57
1.14
2892191--2892289
33
3.1
33
81
7
123
13
63
10
13
1.52
2892198--2892313
30
3.8
30
82
6
133
12
62
10
13
1.53
2892201--2892277
21
3.7
21
70
6
57
12
64
9
12
1.48
2895381--2895482
49
2.1
50
94
1
179
20
22
11
45
1.84
2895461--2895708
105
2.3
107
84
5
331
26
18
16
38
1.92
2896231--2896373
76
1.9
76
80
2
171
37
13
19
29
1.91
2896362--2896440
36
2.2
37
86
6
108
36
15
21
26
1.93
2896448--2896529
36
2.3
36
79
12
96
36
9
20
32
1.86
2896534--2896839
40
7.7
40
93
0
479
41
11
16
29
1.84
2896815--2897051
76
3.1
77
82
7
290
40
13
15
30
1.85
2898249--2898315
32
2.1
32
100
0
134
34
26
13
25
1.93
2899148--2899222
11
6.6
10
73
20
51
4
12
4
80
1.00
2899148--2899222
23
3.2
22
85
10
89
4
12
4
80
1.00
2905987--2906012
3
8.7
3
100
0
52
30
0
0
69
0.89
2907186--2907225
20
2.0
20
90
0
62
35
20
7
37
1.81
2907560--2907591
15
2.2
15
94
5
57
50
0
3
46
1.17
2907577--2907676
41
2.4
40
81
8
103
41
2
2
55
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2909394--2909467
4
18.8
4
90
6
116
28
0
21
50
1.49
2909427--2909518
6
15.3
6
75
8
71
35
1
13
50
1.48
2909392--2909513
16
7.7
16
73
14
101
32
0
16
50
1.51
2909431--2909534
4
26.0
4
80
3
75
38
1
11
48
1.51
2909393--2909518
22
5.6
22
77
10
76
34
0
15
49
1.51
2909722--2909798
33
2.3
33
93
0
127
12
64
11
10
1.49
2909728--2909808
27
3.0
27
79
0
81
14
64
9
11
1.50
2910754--2910919
87
1.9
86
95
1
296
25
13
13
47
1.79
2914042--2914079
12
3.1
13
85
11
53
21
0
47
31
1.51
2914305--2914347
20
2.2
20
83
8
52
69
13
0
16
1.19
2916861--2916885
12
2.1
12
100
0
50
24
32
16
28
1.96
2919226--2919263
18
2.2
17
86
13
51
15
26
28
28
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!