genome.fa.s8252.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008252.1 Hibiscus syriacus cultivar Beakdansim tig00110904_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2928487

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1474 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446928--447036	15	7.1	15	71	17	73	76	5	16	1	1.06
446928--447070	29	4.8	29	75	16	132	75	5	16	2	1.11
446937--447061	34	3.6	34	75	9	108	76	4	16	2	1.07
446948--447031	21	4.0	21	71	10	73	75	5	17	1	1.07
446928--447057	45	2.8	45	73	18	124	75	5	16	2	1.09
446928--447066	13	10.8	12	71	19	52	75	5	16	2	1.09
446975--447073	26	3.7	25	78	15	76	74	5	17	3	1.12
448233--448357	64	1.9	67	85	11	179	32	12	14	40	1.84
448233--448385	66	2.4	63	81	11	170	31	13	14	40	1.85
448303--448548	97	2.5	96	80	10	273	30	17	13	38	1.88
450907--450958	22	2.3	22	80	3	59	30	7	1	59	1.36
453943--454032	44	2.0	45	87	6	130	33	17	7	41	1.79
454595--454641	19	2.5	19	78	0	58	74	8	10	6	1.22
454644--454695	15	3.5	15	87	7	79	73	5	21	0	1.04
455886--456028	67	2.2	63	87	6	198	26	12	16	44	1.84
455886--456040	66	2.4	63	86	7	197	29	12	16	41	1.85
455927--456190	101	2.7	100	79	11	289	31	16	14	38	1.88
456094--456171	31	2.5	31	82	13	83	32	17	12	37	1.88
456238--456496	130	2.0	130	81	4	299	26	30	17	24	1.97
456791--456832	3	14.0	3	100	0	84	33	0	0	66	0.92
458522--458573	22	2.3	22	80	3	59	30	7	1	59	1.36
464942--464990	21	2.4	20	83	10	55	30	12	14	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468677--468712	18	2.0	18	100	0	72	33	11	5	50	1.61
472542--472806	133	2.0	133	100	0	530	23	20	21	35	1.96
473536--473565	13	2.3	13	94	0	51	26	23	26	23	2.00
479419--479457	20	1.9	21	89	5	62	46	23	5	25	1.73
481389--481506	3	41.3	3	86	13	178	34	0	0	65	0.93
481391--481504	38	3.0	37	88	11	178	34	0	0	65	0.93
481495--481537	14	3.1	14	87	9	54	53	2	0	44	1.13
494346--494385	16	2.5	16	88	8	55	30	7	10	52	1.62
494362--494404	20	2.2	20	86	0	59	30	4	9	55	1.52
495169--496132	83	11.7	83	93	4	1546	26	13	23	36	1.92
496782--497515	229	3.2	227	89	3	1056	37	13	19	29	1.90
496776--497515	114	6.5	113	91	3	1044	37	13	19	29	1.91
497651--497763	3	37.7	3	100	0	226	33	0	0	66	0.92
497762--497796	14	2.4	15	85	4	54	60	2	0	37	1.12
500146--500182	17	2.2	17	90	0	56	32	0	2	64	1.07
500141--500197	21	2.7	21	81	8	71	35	0	1	63	1.05
505529--505834	153	2.0	153	92	1	506	28	12	15	44	1.82
507856--507910	25	2.2	25	86	0	74	30	5	5	58	1.44
507867--507941	12	6.2	12	77	18	50	34	2	2	60	1.25
507864--507911	25	1.9	25	91	0	78	31	2	4	62	1.26
507870--507946	25	3.0	25	80	10	77	35	3	2	58	1.30
508977--509013	11	3.5	11	92	3	58	51	13	0	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510659--510702	20	2.2	20	83	0	52	27	18	18	36	1.94
512023--512069	20	2.4	18	80	16	58	78	8	10	2	1.04
512028--512066	20	1.9	21	89	5	62	76	10	10	2	1.10
512044--512134	7	12.4	7	76	19	64	78	2	16	3	0.99
512038--512129	40	2.2	43	81	11	111	78	2	16	3	0.98
514178--514325	58	2.6	56	77	11	153	31	9	20	39	1.84
514367--514584	84	2.6	85	90	1	323	25	23	18	32	1.97
514590--514743	58	2.7	56	79	5	166	31	11	17	38	1.86
515570--515614	17	2.6	17	92	0	72	48	8	20	22	1.76
515565--515611	17	2.5	20	73	23	55	53	6	21	19	1.67
515650--516034	136	2.8	136	81	2	434	35	18	20	25	1.96
515967--516030	17	3.3	19	67	20	51	42	12	21	23	1.87
515952--516349	116	3.4	114	80	8	401	38	15	21	24	1.92
517495--517549	25	2.2	25	86	0	74	30	5	5	58	1.44
517506--517580	12	6.2	12	77	18	50	34	2	2	60	1.25
517503--517550	25	1.9	25	91	0	78	31	2	4	62	1.26
517509--517585	25	3.0	25	80	10	77	35	3	2	58	1.30
525147--525203	16	3.4	17	81	15	73	19	10	43	26	1.83
526127--526215	45	2.0	45	95	0	160	10	33	17	38	1.84
532571--532697	55	2.3	57	91	2	204	29	9	19	41	1.83
532566--532752	58	3.3	56	75	14	161	31	10	17	40	1.83
534943--534975	6	5.5	6	92	0	57	51	30	18	0	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536238--536270	16	2.0	17	94	5	59	51	24	0	24	1.48
538862--538917	23	2.5	23	80	11	64	51	17	17	12	1.75
539184--539229	22	2.1	22	83	0	56	41	2	2	54	1.25
539422--539490	31	2.2	31	87	5	95	43	0	5	50	1.26
539539--539577	19	2.1	18	85	4	51	46	0	0	53	1.00
540935--540965	2	15.5	2	100	0	62	51	0	0	48	1.00
541209--541243	15	2.4	14	90	9	61	51	5	5	37	1.50
541885--541911	14	1.9	14	100	0	54	48	0	0	51	1.00
542115--542139	13	1.9	13	100	0	50	64	20	8	8	1.46
542399--542467	14	5.2	14	77	18	76	55	14	15	14	1.70
542399--542465	24	2.8	24	90	0	107	55	14	14	14	1.70
544549--544589	14	2.9	14	88	0	64	9	12	21	56	1.65
545663--545703	16	2.6	16	96	0	73	9	12	19	58	1.61
548933--549087	3	51.7	3	86	7	172	2	36	0	60	1.16
551669--551714	16	2.8	17	93	3	69	6	43	0	50	1.28
551677--551714	16	2.4	16	100	0	76	5	44	0	50	1.24
552193--552393	91	2.2	91	88	0	285	35	6	27	29	1.83
552315--552451	71	1.9	71	87	0	202	34	5	30	29	1.79
552522--552608	21	4.1	21	72	0	75	37	16	12	33	1.86
557434--557508	20	3.7	21	77	7	75	34	26	17	21	1.95
557433--557510	41	1.9	40	84	10	104	33	26	16	23	1.96
558555--558621	21	3.2	21	72	4	55	40	23	14	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
558593--558651	21	2.8	20	84	5	82	32	23	15	28	1.95
559278--559336	21	2.8	20	82	10	66	30	22	15	32	1.94
558549--559927	685	2.0	685	97	0	2609	31	15	17	35	1.91
565713--565797	18	4.8	19	73	12	74	40	15	9	35	1.79
569020--569045	2	13.0	2	100	0	52	50	0	0	50	1.00
569563--569610	21	2.3	19	77	19	51	39	4	4	52	1.40
573528--573587	10	5.7	10	74	18	59	28	36	20	15	1.92
573525--573599	22	3.5	22	92	3	125	26	34	22	16	1.95
575478--575637	80	2.0	80	100	0	320	35	7	20	37	1.81
575613--575656	20	2.1	21	84	12	56	36	4	22	36	1.75
580242--580345	20	5.2	20	92	0	172	34	23	19	23	1.96
580336--580404	20	3.5	20	89	0	111	44	23	13	18	1.84
580234--580365	60	2.2	58	79	12	158	37	22	17	22	1.94
580654--580687	16	2.1	16	88	0	50	23	0	5	70	1.09
580765--580811	21	2.2	21	96	0	85	21	12	19	46	1.82
582673--582722	21	2.4	21	79	0	55	22	12	32	34	1.90
582738--582788	21	2.4	21	80	6	59	19	11	39	29	1.87
582943--582984	12	3.5	12	83	6	50	23	0	7	69	1.13
583125--583241	42	2.8	42	84	5	139	23	33	18	24	1.97
583129--583241	21	5.4	21	71	8	79	23	33	19	23	1.97
584587--584754	64	2.6	64	87	0	237	27	1	16	54	1.52
584832--584858	14	1.9	14	100	0	54	7	14	29	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
584897--584970	29	2.6	29	91	0	121	28	24	16	31	1.96
585181--585217	18	2.1	18	94	0	65	18	2	21	56	1.54
587476--587529	24	2.2	24	90	0	81	42	20	12	24	1.87
587655--587688	12	2.8	12	90	0	50	14	0	29	55	1.40
588182--588219	16	2.5	15	84	12	51	65	0	5	28	1.14
588350--588413	18	3.9	18	71	23	68	43	15	17	23	1.87
588354--588413	30	2.0	30	100	0	120	46	16	16	20	1.84
588398--588507	20	5.4	20	77	13	100	35	11	22	30	1.90
588399--588519	40	3.0	39	81	7	152	35	11	23	29	1.90
602560--602587	14	2.0	14	100	0	56	21	21	14	42	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13