genome.fa.s8252.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008252.1 Hibiscus syriacus cultivar Beakdansim tig00110904_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2928487

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1474 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215250--215284	12	3.0	12	87	8	54	25	0	0	74	0.82
215245--215315	21	3.5	20	79	11	72	28	0	1	70	0.96
216655--216681	9	3.0	9	100	0	54	33	33	0	33	1.58
220134--220447	85	3.7	85	88	4	465	35	20	17	25	1.95
220134--220447	168	1.9	169	90	2	506	35	20	17	25	1.95
222156--222191	2	18.0	2	100	0	72	50	0	0	50	1.00
222198--222238	8	4.9	8	82	11	55	12	0	9	78	0.98
222198--222239	18	2.5	16	79	20	50	11	0	9	78	0.96
222208--222245	18	2.1	18	95	0	67	13	0	10	76	1.02
222373--222398	10	2.6	10	100	0	52	11	0	38	50	1.39
222559--222595	14	2.8	14	88	8	51	27	0	0	72	0.84
224612--224654	21	2.0	22	95	4	79	39	18	18	23	1.92
234637--234728	3	30.0	3	84	4	121	59	0	0	40	0.97
234885--235120	76	3.1	76	99	0	463	35	23	19	21	1.96
235068--235151	31	2.8	31	94	3	145	35	23	19	21	1.96
234992--235227	107	2.2	107	96	1	440	35	23	19	21	1.96
235097--235325	76	3.0	76	95	1	404	33	22	20	23	1.97
234925--235303	183	2.1	183	97	0	722	35	22	19	22	1.96
235498--235627	35	3.5	37	76	5	147	40	13	15	31	1.85
235488--235627	38	3.8	38	76	4	126	40	12	15	30	1.85
236341--236395	22	2.5	22	87	0	83	40	14	7	38	1.74
236760--236919	54	3.0	54	78	8	152	25	20	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240678--240715	20	1.9	20	89	10	60	84	10	5	0	0.77
240679--240743	24	2.8	24	79	11	71	84	4	7	3	0.85
240679--240749	23	3.1	22	75	15	63	83	7	7	2	0.91
240681--240742	32	2.0	32	90	3	99	85	4	6	3	0.82
245412--245499	12	7.7	11	81	14	90	75	12	12	0	1.06
245414--245499	33	2.5	32	83	10	109	75	11	12	0	1.05
245449--245506	9	5.5	10	77	22	57	72	15	12	0	1.12
251075--251136	11	5.3	11	78	21	54	3	3	8	85	0.81
251059--251137	37	2.1	38	83	6	108	2	5	12	79	0.99
253068--253094	9	3.0	9	100	0	54	55	11	11	22	1.66
258787--258813	11	2.5	11	100	0	54	0	14	7	77	0.97
260355--260391	15	2.4	16	90	4	58	13	10	5	70	1.32
260741--260785	11	4.5	10	83	16	58	80	11	8	0	0.92
260742--260778	18	2.0	19	94	5	67	86	5	8	0	0.70
273788--273888	3	33.0	3	86	4	139	60	0	0	39	0.97
288587--288673	20	4.3	20	71	15	63	42	1	2	54	1.20
288612--288678	31	2.2	31	89	5	100	41	1	1	55	1.18
289079--289131	21	2.5	21	84	0	70	20	26	18	33	1.96
289121--289171	20	2.5	20	93	0	93	39	21	19	19	1.93
289785--289828	20	2.2	20	87	0	61	20	18	25	36	1.95
291713--291836	20	6.5	20	84	10	170	38	21	20	19	1.93
291736--291857	34	3.4	34	81	12	154	40	21	21	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291713--291857	74	2.0	74	94	0	254	40	21	20	17	1.92
291971--292016	20	2.3	20	84	0	56	21	17	21	39	1.93
292500--292591	21	4.4	21	73	4	78	21	36	17	23	1.94
293965--294000	14	2.6	14	90	0	54	30	0	22	47	1.52
294113--294197	33	2.5	33	86	1	116	43	17	24	14	1.86
294207--294293	19	4.8	19	76	15	103	14	21	17	45	1.84
294298--294386	20	4.4	20	90	2	135	16	21	25	35	1.94
294207--294326	53	2.3	53	86	5	163	14	22	19	44	1.86
296083--296136	24	2.2	24	93	0	90	40	20	18	20	1.91
296083--296151	24	2.9	24	84	0	66	37	21	17	23	1.94
296753--296958	20	10.3	20	84	7	267	22	18	19	38	1.93
296955--297000	21	2.2	21	88	0	65	36	17	28	17	1.92
297661--297723	31	2.0	31	87	6	92	53	1	1	42	1.19
303575--303636	29	2.2	28	82	2	70	53	9	3	33	1.50
304014--304113	18	5.7	18	78	13	100	47	14	8	31	1.72
304014--304115	35	2.9	35	84	8	136	47	13	7	31	1.72
305804--305857	24	2.2	24	80	0	63	22	18	22	37	1.95
306393--306425	17	2.0	17	88	5	50	45	6	18	30	1.73
307954--308006	17	3.1	17	80	0	61	41	5	15	37	1.70
311104--311168	23	2.8	23	90	0	94	27	26	26	20	1.99
313206--313244	17	2.3	17	90	0	60	69	10	2	17	1.28
313296--313399	33	3.2	33	94	1	174	45	16	7	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313394--313435	21	2.0	21	95	0	75	47	7	14	30	1.71
322233--322321	24	3.8	24	88	4	137	26	20	22	30	1.98
324922--325041	54	2.2	54	84	0	150	36	18	18	26	1.94
325744--325799	22	2.7	21	83	5	69	25	25	14	35	1.93
327096--327147	19	2.7	20	85	5	72	25	15	21	38	1.92
328211--328243	17	1.9	17	93	0	57	36	3	0	60	1.12
334890--334919	14	2.1	14	100	0	60	20	0	26	53	1.46
337944--337991	22	2.2	22	84	0	60	35	4	6	54	1.45
340649--340694	16	2.9	15	81	9	56	60	8	17	13	1.56
340744--341131	202	1.9	201	86	2	546	41	11	18	28	1.85
342415--342607	103	1.9	104	81	5	239	26	16	23	33	1.95
342723--343265	139	3.9	139	85	1	703	23	15	27	32	1.95
343484--343724	103	2.3	104	91	2	387	39	10	13	36	1.79
350275--350521	123	2.0	124	98	0	478	36	20	13	29	1.91
354967--355342	207	1.8	200	86	5	538	43	10	17	28	1.81
355260--355354	32	2.9	33	83	11	126	55	3	13	27	1.53
355430--355469	19	2.1	19	86	9	55	62	5	10	22	1.46
356290--356339	26	1.9	26	88	8	75	74	10	10	6	1.23
356926--356968	21	2.0	21	82	8	52	65	0	2	32	1.06
357547--357590	18	2.4	18	85	11	54	22	4	6	65	1.35
357764--357812	6	8.2	6	78	17	57	36	0	0	63	0.95
357758--357804	23	2.0	23	88	8	69	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357755--357812	29	2.0	30	86	10	84	39	0	0	60	0.97
362627--362674	19	2.5	20	83	10	64	8	33	2	56	1.41
364963--365003	21	2.0	21	100	0	82	24	14	26	34	1.94
366299--366528	64	3.6	63	81	6	230	27	17	25	29	1.97
366427--366463	19	1.9	19	94	0	65	24	16	37	21	1.93
366321--366528	65	3.2	65	81	12	241	28	16	25	29	1.97
374886--375115	64	3.6	64	81	4	230	27	17	25	29	1.97
375014--375064	19	2.7	19	85	8	70	25	15	35	23	1.94
386550--386720	46	3.8	45	93	2	281	31	23	7	37	1.83
386802--386881	40	2.0	40	85	0	106	22	27	23	26	2.00
387975--388001	12	2.2	12	100	0	54	0	0	22	77	0.76
393346--393403	21	2.8	20	82	17	73	44	27	6	20	1.77
402619--402930	83	3.8	83	79	4	281	31	18	17	32	1.94
402880--402958	41	1.9	41	82	5	97	29	18	18	32	1.96
408249--408401	59	2.6	59	94	0	261	31	21	12	34	1.91
413997--414036	16	2.5	16	87	0	53	30	32	15	22	1.94
415015--415245	59	3.9	59	91	0	363	32	21	11	34	1.90
420313--420353	17	2.3	19	83	12	59	36	2	0	60	1.10
422177--422854	125	5.4	125	92	5	1127	23	25	18	32	1.97
423239--423322	33	2.6	33	83	9	109	39	3	3	53	1.36
423844--423936	21	4.5	21	86	10	120	20	26	34	18	1.96
425679--425751	32	2.3	32	83	7	94	63	1	0	35	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425726--425779	17	3.0	17	77	15	54	68	5	0	25	1.11
429308--429721	208	2.0	204	95	2	749	42	16	13	27	1.86
437147--437192	3	15.7	3	90	4	76	36	0	0	63	0.95
437139--437186	23	2.1	23	96	0	87	37	0	0	62	0.95
438912--438961	21	2.3	21	80	10	57	32	6	0	62	1.20
439632--439719	19	4.8	19	76	16	87	23	32	19	23	1.97
443075--443126	17	2.9	18	91	5	79	23	34	21	21	1.97
443145--443240	20	4.8	20	89	0	147	15	35	19	29	1.93
443149--443240	40	2.3	40	96	0	175	16	35	18	29	1.93
445492--445524	13	2.5	13	100	0	66	39	21	33	6	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13