Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008281.1 Hibiscus syriacus cultivar Beakdansim tig00110943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2054746

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1093 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2032162--2032384
89
2.5
88
78
9
213
19
11
9
58
1.60
2034130--2034171
22
2.0
21
85
4
57
14
21
14
50
1.78
2044448--2044490
22
2.0
22
95
0
77
39
23
2
34
1.67
2046220--2046319
19
5.2
18
81
11
101
17
26
27
30
1.97
2046220--2046313
39
2.4
38
81
13
111
15
24
28
30
1.96
2046220--2046305
29
2.9
30
79
6
104
16
25
27
30
1.97
2046317--2046358
5
8.6
5
78
5
50
26
57
14
2
1.50
2046377--2046406
7
4.4
7
91
8
53
16
30
30
23
1.96
2046377--2046406
13
2.2
14
94
5
53
16
30
30
23
1.96
2051668--2051713
18
2.4
20
82
13
53
36
2
2
58
1.22
2051847--2052009
60
2.8
60
80
7
181
32
20
6
39
1.79
2051919--2052035
58
2.0
58
80
9
132
29
23
5
40
1.79
2054609--2054650
21
2.0
21
100
0
84
57
9
0
33
1.31

Tables:   1   2   3   4   5   6   7   8   9   10

The End!