genome.fa.s8281.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008281.1 Hibiscus syriacus cultivar Beakdansim tig00110943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2054746

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  8  of  10  ( 1093 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1600037--1600070	12	2.8	12	86	4	50	67	0	8	23	1.18
1600049--1600102	21	2.6	21	90	0	81	62	7	11	18	1.50
1601682--1601711	15	2.0	15	93	0	51	56	30	0	13	1.37
1604749--1604831	39	2.1	40	95	2	150	31	13	24	31	1.93
1605116--1605197	29	2.8	29	92	1	128	31	13	14	40	1.85
1611663--1611702	16	2.5	16	100	0	80	17	15	22	45	1.85
1619447--1619494	19	2.5	19	96	0	87	33	8	22	35	1.84
1621469--1621511	20	2.2	20	83	8	52	37	4	2	55	1.33
1623427--1623637	65	3.2	64	81	8	223	27	16	24	32	1.96
1623534--1623584	19	2.7	19	91	8	79	31	15	29	23	1.95
1623598--1623637	21	1.9	21	94	0	71	22	15	30	32	1.94
1623598--1623644	21	2.2	21	88	0	67	21	14	27	36	1.93
1623961--1624063	30	3.4	30	98	0	197	30	26	1	41	1.66
1628163--1628647	54	9.0	54	89	0	700	32	17	18	31	1.94
1628953--1629006	22	2.6	20	80	11	72	20	29	14	35	1.93
1630939--1631016	37	2.0	38	87	7	113	46	11	25	16	1.81
1633996--1634037	18	2.4	17	88	8	57	33	0	2	64	1.07
1647275--1647329	24	2.3	24	83	0	74	76	1	14	7	1.08
1648197--1648552	136	2.6	134	88	3	518	34	17	21	25	1.95
1648475--1648730	91	2.8	90	89	3	397	40	15	19	23	1.90
1648864--1648917	3	18.0	3	80	0	54	31	0	5	62	1.18
1648857--1648898	12	3.5	12	78	21	52	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1665448--1665530	39	2.1	40	95	2	150	31	12	25	31	1.92
1665814--1665896	29	2.8	29	90	7	132	31	13	12	43	1.80
1676668--1676694	2	13.5	2	100	0	54	51	0	0	48	1.00
1676746--1676823	40	1.9	41	84	2	104	44	19	8	26	1.80
1677828--1677875	18	2.8	17	75	12	53	60	2	0	37	1.09
1679228--1679272	18	2.4	19	82	14	58	51	2	0	46	1.13
1680780--1680879	21	4.8	21	87	0	101	33	17	15	35	1.90
1684533--1684634	33	3.1	33	72	1	89	38	4	6	50	1.51
1685037--1685079	12	3.8	12	81	12	63	41	18	20	18	1.90
1685037--1685079	22	2.0	22	95	0	77	41	18	20	18	1.90
1685772--1685832	31	2.0	31	96	0	113	37	22	19	19	1.94
1686231--1686339	33	3.3	32	69	15	80	37	2	11	47	1.55
1688725--1689524	421	1.9	416	85	5	1103	44	7	9	39	1.65
1691879--1691923	23	2.0	23	90	0	72	46	8	11	33	1.70
1691838--1692000	87	1.9	87	96	0	299	41	11	14	33	1.80
1693073--1693137	21	3.1	21	86	0	85	16	29	9	44	1.79
1693220--1693252	15	2.2	15	94	0	57	9	63	9	18	1.49
1695569--1695615	20	2.4	19	79	10	58	19	19	10	51	1.75
1695363--1695827	180	2.6	179	90	1	723	26	16	13	42	1.86
1696258--1696315	29	2.0	30	82	3	73	37	12	3	46	1.58
1700394--1700468	24	3.1	24	83	5	71	40	21	13	25	1.89
1700404--1700484	24	3.4	24	89	0	117	35	22	17	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1709248--1709371	3	41.0	3	91	1	203	66	1	0	30	1.06
1709551--1709908	135	2.7	134	84	3	452	24	18	31	26	1.98
1710040--1710341	29	10.2	28	77	14	202	43	14	12	29	1.82
1710032--1710195	91	1.8	90	82	3	215	45	11	14	28	1.79
1710142--1710358	29	7.4	29	86	8	210	44	14	11	29	1.81
1710312--1710546	64	3.6	65	79	7	253	41	12	11	34	1.79
1710707--1710808	36	2.9	35	82	5	125	36	11	17	34	1.87
1710784--1711095	105	3.0	103	81	9	396	41	10	16	31	1.83
1711055--1711198	36	4.1	35	78	6	157	40	10	18	31	1.84
1711054--1711194	71	2.0	72	84	6	189	38	10	19	31	1.86
1711549--1711579	10	3.1	10	90	0	53	22	0	25	51	1.48
1729770--1729815	23	2.0	23	95	0	83	19	4	15	60	1.51
1732728--1732861	60	2.2	61	82	12	154	33	21	5	39	1.76
1733035--1733160	57	2.2	60	85	7	170	46	3	15	35	1.62
1733379--1733405	13	2.1	13	100	0	54	92	7	0	0	0.38
1734368--1734435	3	22.7	3	100	0	136	32	0	0	67	0.91
1734434--1734468	3	11.7	3	100	0	70	0	0	31	68	0.90
1742844--1743007	75	2.2	75	85	4	215	28	3	10	57	1.48
1742956--1743077	62	2.0	62	83	6	158	27	0	17	54	1.49
1743653--1743693	21	1.9	22	90	5	66	19	4	0	75	0.98
1743734--1743774	16	2.3	19	80	12	52	29	2	0	68	1.03
1749224--1749257	17	2.0	17	94	0	59	61	11	20	5	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1750852--1751016	76	2.2	75	86	3	233	30	3	10	55	1.49
1750880--1751027	75	2.0	76	89	4	228	27	2	10	58	1.45
1753031--1753121	11	9.4	10	75	20	79	74	0	23	2	0.92
1753030--1753106	19	4.3	18	76	18	72	75	0	22	2	0.93
1753033--1753119	33	2.8	32	81	8	90	73	0	24	2	0.95
1755151--1755539	101	3.8	99	78	8	347	34	16	10	38	1.83
1762938--1762983	22	2.1	22	88	8	67	28	4	8	58	1.47
1765770--1765828	24	2.4	25	85	2	75	69	5	23	1	1.18
1766767--1766802	2	18.0	2	100	0	72	50	0	0	50	1.00
1767070--1767104	5	6.8	5	87	6	52	17	0	5	77	0.96
1767067--1767104	16	2.4	17	82	13	53	18	0	5	76	0.97
1770983--1771035	20	2.7	20	100	0	106	39	7	22	30	1.82
1786227--1786283	30	1.9	30	85	0	78	33	19	24	22	1.97
1786652--1786748	37	2.6	37	88	0	149	40	15	11	32	1.83
1790262--1790575	157	2.0	157	100	0	628	35	13	24	26	1.92
1792520--1792598	21	4.0	21	75	16	71	79	6	11	2	1.00
1793207--1793261	22	2.5	22	90	0	83	36	25	12	25	1.91
1794066--1795421	106	13.0	106	86	4	1814	34	24	17	23	1.96
1796150--1796246	37	2.6	37	88	0	149	40	15	11	32	1.83
1796802--1796849	24	2.0	24	87	0	69	29	6	0	64	1.18
1796807--1796908	24	4.2	24	70	21	79	27	4	1	65	1.23
1796869--1796915	23	2.0	23	84	15	62	27	0	2	70	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797084--1797150	24	2.6	25	77	13	66	26	5	1	65	1.24
1801983--1802040	15	3.8	15	78	10	64	81	5	13	0	0.86
1802005--1802043	11	3.6	10	86	10	51	79	2	17	0	0.84
1801983--1802053	26	2.8	24	75	14	70	80	5	14	0	0.89
1802005--1802053	22	2.1	24	85	14	68	79	4	16	0	0.88
1802013--1802052	11	3.5	11	90	10	55	82	2	15	0	0.77
1801983--1802047	15	4.6	14	73	21	55	80	4	15	0	0.88
1802666--1802721	22	2.5	22	91	0	94	37	25	12	25	1.91
1803526--1804889	106	13.0	106	86	3	1791	34	24	17	23	1.96
1805619--1805715	37	2.6	37	85	0	140	41	14	11	32	1.81
1806272--1806387	24	4.7	24	70	18	78	26	4	1	67	1.19
1806409--1806449	11	3.6	11	87	6	55	24	4	4	65	1.32
1806555--1806622	23	3.0	22	75	16	68	30	4	0	64	1.13
1806986--1807050	26	2.5	24	72	16	58	16	4	1	76	1.02
1808904--1808951	13	3.7	13	80	8	53	37	16	10	35	1.83
1811733--1812295	281	2.0	281	99	0	1108	44	17	11	25	1.83
1813148--1813176	15	1.9	15	100	0	58	41	13	13	31	1.84
1814088--1814128	17	2.4	17	91	0	64	51	0	14	34	1.43
1815090--1815119	8	3.8	8	90	0	51	63	0	36	0	0.95
1825075--1825106	16	1.9	17	93	6	57	25	21	3	50	1.64
1825182--1825270	32	2.7	33	73	1	81	40	4	6	48	1.50
1829479--1830018	54	10.1	54	85	2	714	37	17	10	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1829479--1830018	214	2.5	214	85	2	728	37	17	10	35	1.84
1831068--1831167	35	2.7	35	86	6	119	38	15	16	31	1.89
1834557--1834615	23	2.8	22	73	14	61	76	6	16	0	1.00
1834559--1834630	21	3.3	21	82	3	72	77	5	15	1	1.01
1836133--1836237	36	2.9	36	87	2	147	24	22	12	40	1.89
1836133--1836242	37	3.0	37	86	2	150	26	22	11	39	1.89
1836269--1836339	37	1.9	37	88	0	106	23	21	12	42	1.87
1836151--1836542	102	3.9	102	94	0	660	29	20	12	37	1.89
1836355--1836441	37	2.4	37	86	5	115	25	21	13	39	1.90
1836151--1836609	204	2.2	203	89	1	675	29	21	12	37	1.90

Tables:   1   2   3   4   5   6   7   8   9   10