genome.fa.s8281.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008281.1 Hibiscus syriacus cultivar Beakdansim tig00110943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2054746

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1093 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758843--759016	60	2.9	60	83	4	210	31	21	4	43	1.73
764688--764755	28	2.4	28	95	0	118	58	14	11	14	1.63
766416--766457	20	2.2	20	95	4	77	45	19	7	28	1.76
767279--767361	21	4.0	21	98	0	157	30	28	14	26	1.95
768824--768880	17	3.2	17	78	7	60	42	1	7	49	1.40
768836--768906	5	14.0	5	73	24	51	40	1	4	53	1.29
768838--768904	23	3.0	23	79	16	79	40	1	4	53	1.30
768817--768895	12	7.0	12	75	13	78	43	2	6	48	1.42
768835--768905	36	1.9	38	83	11	94	42	1	4	52	1.29
771956--772007	13	3.8	13	80	7	59	23	21	19	36	1.95
777584--777620	18	2.0	19	94	5	67	48	10	8	32	1.67
781129--781188	24	2.5	24	94	0	111	31	16	18	33	1.93
783727--783781	26	2.1	25	83	12	67	18	12	5	63	1.47
783838--783869	12	2.6	12	95	5	55	40	18	25	15	1.90
793472--793543	14	5.1	14	76	3	63	31	31	13	22	1.93
796738--796796	17	3.4	17	83	6	66	35	15	10	38	1.81
804792--804903	35	3.2	34	81	9	120	42	21	0	34	1.59
805115--805157	22	2.0	22	85	0	59	37	0	0	62	0.95
805929--806041	35	3.2	34	88	5	163	33	0	23	42	1.60
806462--806510	22	2.1	24	85	14	68	55	0	0	44	0.99
807090--807174	2	42.5	2	74	4	73	47	5	4	42	1.48
807083--807231	12	12.1	12	71	12	79	44	10	6	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
807184--807272	45	2.0	45	84	0	115	39	16	6	37	1.76
808218--808266	21	2.3	22	75	6	57	61	0	8	30	1.25
808303--808552	114	2.2	113	83	3	315	21	19	13	45	1.84
808622--808662	22	1.9	21	85	14	57	26	9	4	58	1.50
808627--808734	51	2.1	50	81	6	119	22	13	6	57	1.59
808762--808817	11	5.1	10	83	12	58	14	1	3	80	0.93
810974--811171	110	1.8	110	84	0	270	23	17	11	47	1.79
811237--811361	51	2.5	51	80	7	139	23	12	6	58	1.56
811377--811461	21	4.3	20	77	17	88	21	0	3	75	0.95
814774--814812	13	2.9	14	84	3	53	28	23	20	28	1.99
822951--823161	2	104.0	2	66	10	97	44	9	4	41	1.57
823020--823078	11	5.6	11	76	11	52	45	20	3	30	1.67
825512--825552	15	2.8	15	88	3	57	14	17	14	53	1.73
841163--841270	49	2.2	49	86	3	146	25	24	11	38	1.88
843053--843083	13	2.4	13	94	0	53	74	6	3	16	1.16
843392--843770	189	2.0	188	89	0	569	31	13	23	31	1.93
850120--850160	17	2.5	17	96	4	75	26	34	7	31	1.84
855506--855573	33	2.1	33	100	0	136	32	26	11	29	1.92
856786--856825	16	2.5	15	88	11	62	35	2	0	62	1.09
856830--856961	51	2.7	51	83	6	141	35	7	12	43	1.71
863800--863921	61	2.0	61	100	0	244	27	21	18	32	1.96
876789--876838	16	3.0	16	85	11	57	26	2	2	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
877226--877305	28	2.9	27	76	12	72	46	21	0	32	1.52
881832--881906	26	2.9	25	71	13	71	32	9	17	41	1.81
881756--881994	102	2.3	102	86	1	318	29	7	20	42	1.79
881755--882023	51	5.2	52	74	6	208	29	7	20	41	1.81
884024--884186	29	5.7	28	79	4	146	34	6	23	35	1.80
884024--884186	57	2.8	56	82	4	182	34	6	23	35	1.80
887074--887288	71	3.1	70	85	3	283	37	9	22	30	1.86
887077--887453	37	10.4	36	69	12	193	39	9	20	30	1.84
887262--887330	22	3.2	22	64	15	54	37	7	23	31	1.82
892244--892428	102	1.8	102	84	2	255	28	8	20	43	1.80
892229--892455	102	2.2	102	77	3	242	30	8	18	42	1.80
897089--897140	19	2.7	19	100	0	104	17	21	34	26	1.95
897044--897206	84	2.0	83	83	8	206	26	17	25	30	1.98
897105--897272	65	2.6	63	76	11	171	25	17	25	32	1.97
897627--897699	34	2.1	34	94	0	128	31	30	0	38	1.58
897637--897693	16	3.4	16	68	17	53	36	22	0	40	1.55
899562--899604	24	1.9	23	81	13	54	27	4	6	60	1.43
910178--910311	39	3.4	39	73	13	123	35	19	26	19	1.95
910139--910310	78	2.2	78	84	0	209	34	18	26	20	1.95
912478--912525	16	2.9	15	77	19	51	68	0	14	16	1.21
922388--922433	23	2.0	23	100	0	92	39	26	8	26	1.85
927096--927179	44	1.9	44	92	0	141	22	20	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934052--934143	44	2.1	44	87	4	132	19	21	26	32	1.97
934147--934225	39	2.0	39	85	0	104	16	27	24	31	1.96
941620--941653	17	2.1	16	88	5	50	14	5	11	67	1.39
947568--947610	20	2.1	21	83	8	54	20	11	0	67	1.22
947567--947616	19	2.5	20	72	15	50	20	16	0	64	1.30
951433--951466	17	2.1	16	88	5	50	14	8	0	76	1.01
954408--954449	22	1.9	22	90	0	66	26	35	19	19	1.95
958920--958952	13	2.6	13	90	4	50	69	6	0	24	1.10
959525--959715	76	2.6	76	86	5	248	56	13	0	29	1.42
961249--961350	5	20.8	5	72	9	68	71	1	3	22	1.12
961311--961363	27	2.0	26	92	3	88	75	3	3	16	1.10
972097--972262	76	2.2	75	87	4	230	54	13	1	30	1.46
972097--972298	76	2.7	73	79	8	219	54	11	1	31	1.48
973975--974062	21	4.2	21	86	0	131	29	23	10	36	1.88
974041--974262	114	2.0	113	88	2	329	32	24	12	30	1.92
978866--978899	7	5.0	7	85	7	52	26	26	29	17	1.98
978901--978928	14	2.0	14	100	0	56	7	21	50	21	1.72
978925--978963	19	2.1	19	95	0	69	25	28	25	20	1.99
986075--986103	14	2.1	14	100	0	58	6	20	51	20	1.70
987119--987174	28	2.0	28	96	0	103	30	3	14	51	1.59
989003--989065	24	2.6	24	75	9	65	49	12	14	23	1.78
996479--996508	14	2.1	14	93	0	51	43	0	16	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997180--997236	16	3.5	16	71	4	51	19	15	22	42	1.89
997156--997243	33	2.7	33	82	5	108	22	13	25	38	1.91
997122--997299	32	5.5	32	75	4	115	15	12	25	46	1.81
1006327--1006386	11	5.6	10	77	18	59	81	3	13	1	0.89
1006326--1006379	19	2.9	18	78	15	56	81	5	11	1	0.93
1017243--1017275	15	2.3	15	90	10	52	6	27	3	63	1.32
1033442--1033467	2	13.0	2	100	0	52	50	0	0	50	1.00
1038227--1038301	39	1.9	39	88	0	114	17	28	25	29	1.97
1044565--1044650	21	4.1	21	84	0	118	30	23	10	36	1.88
1044631--1044849	114	2.0	110	83	5	278	35	22	10	31	1.89
1046502--1046537	12	3.0	12	87	0	54	33	8	8	50	1.63
1053071--1053120	22	2.4	20	81	15	57	30	20	18	32	1.96
1053656--1053686	15	2.1	15	93	0	53	19	0	9	70	1.14
1054334--1054376	2	21.5	2	100	0	86	48	0	0	51	1.00
1054586--1054628	18	2.4	17	85	11	59	34	4	6	53	1.49
1058016--1058153	31	4.5	31	79	3	136	14	24	31	29	1.95
1062358--1062522	31	5.3	31	78	2	134	15	23	31	29	1.95
1064273--1064321	25	2.0	24	84	15	64	16	10	0	73	1.09
1070224--1070259	17	2.1	17	94	0	63	27	11	22	38	1.88
1075332--1075396	28	2.3	28	97	0	121	24	26	29	20	1.99
1079746--1079788	17	2.5	17	96	0	77	25	11	27	34	1.91
1080257--1080282	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1080373--1080446	16	4.7	15	75	14	60	35	2	1	60	1.19
1080367--1080481	16	7.3	15	71	19	58	27	5	0	66	1.19
1080442--1080531	36	2.7	32	71	20	76	17	5	4	72	1.21
1080429--1080520	35	2.6	36	79	6	98	19	5	3	71	1.19
1080475--1080553	32	2.5	31	78	15	90	21	2	6	69	1.23
1091074--1091100	9	3.0	9	100	0	54	77	0	22	0	0.76
1091944--1092029	34	2.5	34	92	0	145	32	23	19	24	1.98
1093771--1093802	2	16.0	2	100	0	64	50	0	0	50	1.00
1093880--1093912	17	1.9	17	93	0	57	30	6	0	63	1.18
1093751--1093905	77	2.0	77	80	9	174	29	6	1	61	1.31

Tables:   1   2   3   4   5   6   7   8   9   10