genome.fa.s8281.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008281.1 Hibiscus syriacus cultivar Beakdansim tig00110943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2054746

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  6  of  10  ( 1093 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093855--1093961	50	2.2	49	81	11	121	33	3	0	61	1.20
1093936--1094053	29	4.1	29	78	15	102	19	4	2	73	1.11
1093943--1094009	7	10.2	6	75	22	55	19	4	0	76	0.96
1093949--1094008	13	4.6	12	79	18	50	18	5	0	76	0.96
1093943--1094009	27	2.5	27	81	11	75	19	4	0	76	0.96
1093966--1094031	15	4.6	15	79	12	77	15	4	3	77	1.06
1093966--1094053	15	6.1	14	73	24	60	15	4	3	76	1.09
1093973--1094049	23	3.5	22	77	22	83	15	3	3	76	1.08
1093945--1094055	15	6.5	17	70	21	56	18	4	2	73	1.12
1095291--1095329	20	2.0	20	89	0	60	33	10	23	33	1.88
1096160--1096202	22	2.0	23	86	9	63	11	9	11	67	1.42
1103021--1103045	13	1.9	13	100	0	50	72	0	16	12	1.13
1103171--1103209	13	2.9	13	84	3	51	69	5	0	25	1.09
1104715--1104848	49	2.7	51	85	7	179	30	0	16	52	1.49
1104729--1104848	25	4.9	24	75	7	107	29	0	16	53	1.49
1104716--1104847	12	10.7	12	79	7	113	29	0	16	53	1.49
1110143--1110168	2	13.0	2	100	0	52	50	0	0	50	1.00
1110200--1110224	2	12.5	2	100	0	50	48	0	0	52	1.00
1116636--1116705	27	2.6	27	86	4	97	48	14	12	24	1.78
1119416--1119485	27	2.6	27	90	0	113	45	17	14	22	1.84
1126295--1126648	42	8.5	42	84	5	418	27	22	17	33	1.96
1126266--1126648	83	4.6	84	82	6	422	28	21	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126266--1126648	125	3.1	124	87	3	520	28	21	17	32	1.96
1127212--1127248	19	1.9	19	88	0	56	75	2	21	0	0.92
1130591--1130927	43	7.9	42	80	10	294	23	20	21	34	1.96
1130578--1130904	85	3.8	85	79	6	313	23	20	21	34	1.97
1130576--1130929	128	2.8	126	80	8	340	22	20	21	35	1.96
1131219--1131814	59	10.1	59	87	0	832	28	23	11	36	1.89
1131289--1131378	26	3.2	26	67	24	74	27	23	13	35	1.92
1131299--1131389	27	3.2	27	65	24	69	27	24	15	32	1.95
1138050--1138409	59	6.1	59	90	0	560	26	23	12	36	1.91
1142146--1142185	21	1.9	21	84	0	53	65	10	2	22	1.35
1144280--1144360	32	2.5	32	76	7	92	37	12	19	30	1.89
1146286--1146311	13	2.0	13	100	0	52	53	0	38	7	1.30
1148055--1148109	25	2.2	26	83	3	67	36	7	3	52	1.47
1149748--1149797	24	2.1	24	81	7	57	40	2	2	56	1.22
1150584--1152418	807	2.3	804	79	7	1917	41	19	9	29	1.82
1154474--1154509	18	2.1	17	94	5	63	33	0	22	44	1.53
1160856--1161190	166	2.0	168	98	1	656	36	9	8	46	1.66
1162229--1162360	59	2.2	60	80	4	149	35	15	12	35	1.86
1162419--1162503	43	2.0	43	95	0	152	32	5	20	41	1.76
1166116--1166155	20	2.0	20	90	0	62	10	25	10	55	1.64
1167094--1167124	3	10.3	3	100	0	62	32	0	0	67	0.91
1168685--1168749	30	2.2	30	83	10	80	21	9	9	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1172862--1173062	65	3.1	63	77	16	205	31	23	17	27	1.97
1177577--1177798	109	2.0	110	99	0	437	34	9	11	44	1.73
1178966--1179045	23	3.5	22	77	8	90	25	26	23	25	2.00
1180412--1180455	21	2.1	21	82	0	52	9	38	15	36	1.80
1181842--1181950	54	2.0	55	98	1	211	59	14	16	9	1.60
1182578--1182696	7	16.4	7	69	18	66	75	5	16	2	1.09
1182574--1182696	49	2.6	47	81	11	128	75	5	16	2	1.10
1182574--1182690	28	4.0	28	74	13	87	75	5	17	1	1.09
1182600--1182697	34	2.8	33	82	11	92	76	5	15	3	1.08
1182610--1182674	13	4.9	13	83	12	80	76	6	15	1	1.05
1184084--1184181	38	2.6	37	90	4	144	39	17	12	30	1.86
1184085--1184208	38	3.4	35	83	8	133	37	18	12	32	1.88
1184276--1184758	130	3.7	130	81	4	517	27	30	17	24	1.97
1186554--1186719	30	5.6	30	77	5	149	22	15	6	56	1.62
1186554--1186696	59	2.4	60	82	3	164	22	15	5	56	1.60
1186582--1186742	30	5.4	29	74	16	132	20	14	7	57	1.61
1186554--1186735	60	3.1	58	78	8	186	21	14	6	57	1.60
1186554--1186742	89	2.1	89	79	8	206	20	15	7	56	1.63
1187412--1187702	145	2.0	145	100	0	582	31	17	14	35	1.90
1190624--1190759	50	2.7	51	71	6	134	33	13	15	37	1.87
1191180--1191287	57	1.9	57	90	3	173	50	6	15	27	1.69
1194190--1194220	11	2.8	11	100	0	62	58	22	9	9	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1194762--1194802	20	2.1	19	86	4	55	53	19	7	19	1.68
1199915--1199955	20	2.1	19	86	4	55	53	19	7	19	1.68
1203589--1203613	2	12.5	2	100	0	50	52	48	0	0	1.00
1205312--1205400	43	2.0	44	95	4	162	40	26	2	30	1.68
1209250--1209607	175	2.1	175	98	0	700	31	17	8	41	1.81
1210980--1211033	18	3.2	17	80	12	58	5	24	1	68	1.21
1222697--1222741	13	3.5	13	90	0	72	28	24	15	31	1.96
1222713--1222878	85	2.0	84	85	1	224	31	19	17	31	1.95
1228437--1228802	182	2.0	184	98	1	718	33	25	7	34	1.83
1240564--1240617	24	2.2	24	80	0	63	46	18	14	20	1.84
1247160--1247352	99	1.9	99	80	4	219	31	21	18	29	1.97
1247535--1247586	3	16.3	3	84	7	59	36	3	0	59	1.16
1248076--1248116	17	2.6	15	82	14	55	80	2	17	0	0.82
1248076--1248117	16	2.6	16	85	10	59	80	2	16	0	0.81
1248076--1248146	20	3.7	18	72	20	63	77	4	16	1	1.00
1251255--1251298	22	2.0	22	86	0	61	31	9	6	52	1.59
1253455--1253542	28	3.2	28	75	13	83	38	17	6	37	1.76
1256106--1256145	20	2.0	20	90	0	62	35	20	15	30	1.93
1257579--1257620	19	2.2	20	86	4	59	38	16	4	40	1.70
1259512--1259557	20	2.3	20	88	3	67	39	15	6	39	1.73
1261249--1261282	6	5.7	6	100	0	68	0	32	50	17	1.47
1262190--1263187	9	124.6	8	64	22	189	46	5	4	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1262190--1262348	43	3.7	43	73	10	119	48	4	3	44	1.38
1262319--1262432	33	3.7	33	75	14	82	47	4	2	45	1.36
1262472--1262700	94	2.4	94	87	7	306	46	5	4	43	1.47
1262931--1263064	31	4.1	31	82	9	144	44	7	5	42	1.55
1263005--1263199	53	3.8	49	78	11	155	46	5	4	44	1.44
1262968--1263197	31	8.2	29	71	21	102	46	6	4	43	1.48
1262190--1263187	2	498.5	2	63	22	189	46	5	4	44	1.44
1264689--1264797	2	54.0	2	77	12	107	49	3	0	45	1.25
1264880--1264981	20	5.3	20	77	13	74	50	3	3	42	1.39
1265317--1265595	96	2.8	99	78	11	270	33	31	4	30	1.77
1265395--1265689	95	3.0	103	78	8	281	34	30	3	31	1.74
1266803--1266836	14	2.4	14	90	5	50	35	20	0	44	1.52
1268130--1268167	18	2.1	18	95	0	67	23	50	18	7	1.73
1268191--1268369	29	6.1	28	80	8	166	34	5	21	38	1.76
1268557--1268581	6	4.2	6	100	0	50	16	20	16	48	1.82
1269305--1269596	117	2.5	117	90	2	453	18	16	33	30	1.93
1270879--1270988	47	2.2	51	79	14	138	24	27	3	44	1.70
1270986--1271121	55	2.5	55	85	2	175	21	27	5	45	1.74
1272876--1272930	3	18.3	3	92	0	92	30	1	0	67	1.01
1273488--1273536	19	2.7	18	73	17	55	34	6	2	57	1.35
1273907--1273960	13	4.4	13	77	13	60	7	29	14	48	1.71
1273907--1273956	23	2.2	23	100	0	100	8	30	14	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1273907--1273968	23	2.7	23	92	0	88	6	29	17	46	1.73
1274437--1274573	58	2.4	56	77	4	148	40	11	5	42	1.65
1276369--1276473	3	35.0	3	100	0	210	33	0	66	0	0.92
1287620--1287780	79	2.0	79	100	0	322	31	20	37	11	1.88
1287981--1288262	139	2.0	140	99	0	557	36	16	18	28	1.92
1318465--1318510	25	1.9	25	86	8	69	54	4	10	30	1.55
1319921--1319964	20	2.1	21	91	4	72	34	15	6	43	1.74
1319939--1320131	38	5.2	38	76	15	172	32	13	13	39	1.84
1321109--1321201	20	4.7	20	80	10	118	36	23	19	20	1.95
1321109--1321219	40	2.8	40	87	5	136	35	24	19	20	1.96

Tables:   1   2   3   4   5   6   7   8   9   10