genome.fa.s8281.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008281.1 Hibiscus syriacus cultivar Beakdansim tig00110943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2054746

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  9  of  10  ( 1093 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1836457--1836609	36	4.4	36	69	11	111	28	22	13	35	1.92
1836495--1836642	67	2.2	67	89	4	228	31	23	10	33	1.89
1836776--1836871	36	2.6	36	86	4	122	26	18	15	39	1.91
1836830--1836987	67	2.4	67	85	5	196	32	21	8	37	1.83
1836821--1836987	65	2.5	65	83	4	192	31	21	8	38	1.83
1837608--1838383	105	7.3	105	84	4	810	32	25	19	22	1.97
1838844--1838943	35	2.7	35	86	6	119	38	15	16	31	1.89
1845294--1845658	106	3.4	104	84	6	482	37	15	9	37	1.79
1845278--1845651	160	2.3	159	84	6	479	37	16	8	37	1.80
1845293--1845669	54	7.1	54	84	3	467	37	16	9	37	1.80
1846087--1846126	19	2.0	21	85	14	57	27	20	15	37	1.92
1850037--1850718	81	8.4	80	84	2	783	32	21	10	35	1.87
1850106--1850718	245	2.5	243	85	3	833	33	21	9	36	1.86
1854150--1854241	13	7.3	13	82	7	100	19	43	19	17	1.88
1856542--1856627	24	3.6	24	84	3	102	27	16	18	37	1.92
1856542--1856632	47	1.9	48	86	2	130	28	16	17	37	1.92
1858745--1858781	13	2.8	13	91	0	65	16	48	21	13	1.80
1858741--1858805	31	2.1	31	91	0	103	16	46	20	16	1.85
1858759--1858799	18	2.3	18	91	0	64	17	46	21	14	1.84
1858781--1858823	21	2.2	20	88	12	63	16	32	25	25	1.96
1861086--1861176	24	3.8	24	82	2	112	25	16	19	38	1.92
1865898--1866474	81	7.1	81	86	0	760	33	19	9	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870188--1870218	12	2.6	12	100	0	62	22	0	32	45	1.53
1873785--1873826	22	1.9	22	95	0	75	38	7	11	42	1.69
1878690--1878771	30	2.5	33	86	7	116	30	13	26	29	1.94
1878690--1878778	34	2.8	30	86	6	115	29	13	25	31	1.94
1878694--1878778	17	5.2	17	66	16	54	28	12	27	31	1.93
1880060--1880273	47	4.6	47	90	2	324	34	21	6	38	1.79
1880060--1880273	95	2.3	94	90	2	324	34	21	6	38	1.79
1884047--1884134	6	16.4	5	77	15	63	7	15	1	75	1.10
1884057--1884139	19	4.5	19	74	21	54	9	15	1	73	1.15
1884047--1884134	11	8.2	10	73	19	63	7	15	1	75	1.10
1884044--1884127	29	2.9	29	84	13	111	8	15	0	76	1.01
1884150--1884201	2	26.5	2	96	3	97	48	0	0	51	1.00
1886419--1886458	20	2.0	20	85	0	53	50	5	2	42	1.37
1886989--1887202	47	4.6	47	91	2	315	33	20	7	38	1.80
1887272--1887386	61	1.9	61	81	3	142	31	26	16	26	1.97
1888116--1888152	14	2.6	14	95	0	65	27	16	18	37	1.92
1889212--1889285	30	2.5	29	82	10	87	35	21	2	40	1.68
1890751--1890794	18	2.4	18	92	0	70	20	13	29	36	1.91
1890817--1891072	138	1.9	138	85	1	361	26	14	17	41	1.88
1895856--1895933	39	2.0	39	100	0	156	53	10	10	25	1.66
1896292--1896347	27	2.1	27	100	0	112	28	7	10	53	1.62
1902505--1902670	83	2.0	83	96	0	305	35	24	21	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907712--1907800	30	3.0	30	74	12	83	40	8	19	31	1.82
1909890--1909983	45	2.1	44	84	5	118	42	5	18	34	1.73
1916861--1916946	24	3.5	25	69	23	58	44	2	1	52	1.21
1919853--1920048	101	1.9	101	86	6	281	32	10	18	38	1.85
1923225--1923274	23	2.2	23	92	0	82	56	2	20	22	1.53
1923378--1923418	3	13.3	3	89	5	64	34	0	0	65	0.93
1924687--1924730	2	22.5	2	86	4	63	47	2	0	50	1.13
1925093--1925120	2	14.0	2	100	0	56	50	0	0	50	1.00
1930674--1930737	12	4.9	13	80	16	71	82	0	15	1	0.74
1930675--1930728	12	4.3	12	84	15	74	83	0	16	0	0.65
1930668--1930737	27	2.6	25	86	8	86	81	0	17	1	0.77
1930670--1930737	5	13.2	5	73	17	59	82	0	16	1	0.75
1930668--1930737	30	2.5	28	84	11	81	81	0	17	1	0.77
1933661--1933996	40	8.4	40	89	1	496	30	16	12	41	1.84
1933987--1934163	36	5.1	36	74	14	140	27	19	12	40	1.87
1934134--1934186	15	3.7	15	77	10	65	33	16	13	35	1.88
1933987--1934201	100	2.2	100	83	5	258	27	20	13	39	1.89
1934233--1934273	15	2.7	15	92	0	64	21	24	24	29	1.99
1934885--1934943	19	3.0	21	69	23	63	47	11	20	20	1.81
1934886--1934949	20	3.2	20	65	18	53	43	12	20	23	1.85
1934866--1935040	91	1.9	92	87	3	255	41	14	20	24	1.89
1934625--1935281	332	2.0	331	88	3	982	38	17	19	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1936774--1936803	13	2.3	13	94	0	51	26	10	26	36	1.88
1937077--1937146	2	35.0	2	100	0	140	50	0	0	50	1.00
1938343--1938401	22	2.7	22	97	0	109	57	8	13	20	1.62
1938387--1938444	23	2.5	24	83	8	75	48	12	13	25	1.77
1939421--1939669	29	8.6	29	77	1	230	38	17	21	22	1.93
1939421--1939669	58	4.3	58	78	4	259	38	17	21	22	1.93
1939421--1939613	87	2.2	87	84	0	260	38	18	20	22	1.93
1939421--1939669	87	2.9	86	78	3	257	38	17	21	22	1.93
1945746--1945790	21	2.1	22	87	4	65	24	0	2	73	0.95
1946096--1946288	20	9.6	20	81	5	219	35	26	19	19	1.95
1946668--1946738	33	2.2	33	94	0	124	11	23	16	47	1.79
1946818--1946893	21	3.7	21	82	3	109	46	17	25	11	1.82
1946870--1946950	33	2.5	33	91	0	126	48	20	20	9	1.78
1946946--1947073	19	7.1	19	71	19	87	10	25	18	45	1.82
1946968--1947024	14	3.7	14	75	20	60	8	24	22	43	1.81
1946951--1947073	33	3.5	33	88	10	165	10	24	18	46	1.81
1947009--1947073	21	3.1	21	82	4	96	10	26	15	47	1.78
1948754--1948974	93	2.4	92	95	1	390	23	12	19	45	1.84
1949099--1949195	19	5.7	18	71	23	66	47	26	18	7	1.74
1949072--1949195	33	3.7	33	90	1	176	46	27	16	8	1.77
1949121--1949179	14	3.9	14	76	20	64	47	28	16	6	1.72
1949191--1949347	19	8.8	19	75	13	145	10	20	22	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1949191--1949347	33	4.4	38	81	8	154	10	20	22	46	1.80
1951290--1951325	14	2.6	14	95	0	63	33	0	22	44	1.53
1951432--1951481	19	2.6	19	100	0	100	44	18	22	16	1.87
1951471--1951714	19	13.7	19	75	20	251	15	22	16	45	1.85
1951513--1951714	72	2.8	71	84	10	250	14	21	16	46	1.83
1951471--1951728	53	4.9	53	88	9	361	14	22	17	45	1.85
1954011--1954035	12	2.1	12	100	0	50	0	28	0	72	0.86
1954210--1954256	24	2.0	24	87	8	69	38	21	14	25	1.92
1954949--1955178	20	11.4	20	85	0	208	21	17	24	36	1.95
1957967--1958043	30	2.6	30	93	0	127	27	28	18	25	1.98
1959447--1959492	20	2.3	20	85	3	58	39	26	0	34	1.57
1960720--1960797	24	3.2	24	94	1	129	38	15	8	37	1.79
1972467--1972524	30	1.9	30	85	0	80	27	22	15	34	1.94
1975663--1975702	19	2.1	18	86	9	53	80	2	7	10	1.00
1976875--1976917	13	3.3	13	83	6	52	32	18	16	32	1.93
1978625--1979021	202	2.0	195	96	3	731	27	17	19	36	1.94
1984631--1984900	45	6.0	45	82	6	228	30	19	7	41	1.80
1984683--1984933	89	2.8	89	83	2	279	28	21	9	40	1.85
1984672--1984933	45	5.9	44	80	4	229	29	21	9	39	1.85
1984661--1984932	134	2.0	135	82	3	334	29	20	8	40	1.83
1984871--1985104	78	3.0	79	85	3	319	30	22	11	35	1.89
1985465--1985518	20	2.7	20	97	0	99	24	25	20	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1985465--1985533	20	3.5	20	90	3	88	24	26	18	30	1.98
1985888--1986101	107	2.0	107	99	0	419	37	22	3	35	1.73
1988689--1988913	29	7.8	29	75	4	157	39	14	22	23	1.91
1988691--1988856	87	1.9	86	80	4	190	41	13	20	24	1.88
1998133--1998359	29	7.8	29	72	6	129	39	17	19	23	1.92
2003545--2003598	2	27.5	2	96	3	101	50	0	0	50	1.00
2010802--2010859	20	2.8	20	92	2	89	24	37	24	13	1.91
2013132--2013163	11	2.6	13	80	19	50	18	0	31	50	1.48
2013136--2013179	11	4.0	11	96	0	79	20	0	25	54	1.45
2032160--2032382	30	7.5	30	74	8	125	19	11	9	58	1.60

Tables:   1   2   3   4   5   6   7   8   9   10