genome.fa.s8281.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008281.1 Hibiscus syriacus cultivar Beakdansim tig00110943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2054746

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1093 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581885--582123	69	3.5	67	79	7	214	24	24	19	31	1.98
581861--582123	138	1.9	137	82	2	330	24	25	19	30	1.98
582137--582199	19	3.3	19	80	6	65	36	25	12	25	1.91
582149--582291	76	1.9	77	85	4	200	40	22	7	29	1.82
591540--591596	28	2.0	28	96	0	105	52	15	14	17	1.75
591917--591965	19	2.6	19	100	0	98	18	18	40	22	1.91
591970--592106	65	2.1	65	83	2	168	32	18	20	28	1.96
593188--593243	27	2.1	27	86	6	78	35	26	10	26	1.89
608647--608702	20	2.8	20	76	10	60	75	0	10	14	1.06
610004--610058	23	2.4	23	93	0	92	30	25	32	10	1.90
610026--610103	21	3.6	21	80	3	84	33	28	23	15	1.95
612391--612469	5	16.6	5	81	16	89	65	0	0	34	0.93
612388--612467	39	2.0	41	85	11	112	67	0	0	32	0.91
612391--612501	12	9.2	12	73	20	72	62	0	1	35	1.12
612394--612516	32	3.9	31	73	16	94	60	1	2	35	1.20
612483--612526	8	5.8	8	78	10	56	50	6	2	40	1.42
612481--612533	15	3.5	15	82	10	72	50	5	3	39	1.44
612480--612539	30	2.0	30	93	0	102	48	5	5	41	1.47
612445--612533	15	5.9	14	74	18	63	52	3	4	39	1.38
612460--612539	30	2.6	30	84	11	92	48	3	6	41	1.46
612565--612596	2	16.0	2	100	0	64	50	0	0	50	1.00
612627--612893	72	3.7	73	81	8	321	40	8	5	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612616--613010	72	5.5	71	76	11	315	41	10	5	43	1.61
612611--613010	37	11.1	35	79	6	302	41	10	5	43	1.62
613622--613804	26	7.8	25	68	20	117	20	25	10	43	1.84
613595--613917	46	7.0	46	92	0	493	21	23	10	44	1.83
623242--623301	28	2.1	29	84	6	77	73	1	10	15	1.17
623505--623544	18	2.2	18	86	0	53	80	0	5	15	0.88
624511--624578	15	4.5	16	74	17	65	64	1	0	33	1.02
624689--625058	37	10.1	35	75	15	261	40	10	5	43	1.64
624684--624906	73	3.0	72	86	6	297	38	9	5	46	1.61
624683--624930	37	6.8	37	82	9	280	38	9	6	45	1.63
624682--625058	110	3.4	109	79	11	337	39	10	6	44	1.64
624689--624973	73	3.9	75	83	6	257	39	10	5	43	1.64
625024--625069	22	2.0	24	87	12	69	41	8	2	47	1.46
649347--649390	19	2.3	19	96	0	79	40	15	18	25	1.90
649488--649549	12	4.6	14	73	20	53	79	0	12	8	0.94
649491--649566	19	4.0	18	77	15	73	78	0	15	5	0.91
649506--649568	8	7.4	8	73	19	56	80	0	15	3	0.83
649510--649576	34	2.0	34	87	0	98	77	0	16	5	0.95
650778--651343	134	4.2	134	82	3	575	33	19	14	31	1.92
650780--651343	269	2.1	267	81	3	630	34	19	14	31	1.92
653584--653641	11	5.2	11	80	10	64	68	0	6	24	1.13
659191--659395	42	5.0	41	81	7	202	25	18	18	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659192--659395	84	2.5	82	80	5	225	25	17	18	38	1.92
661506--661535	13	2.2	14	94	5	53	46	6	0	46	1.29
661635--661668	12	2.8	12	86	0	50	67	0	0	32	0.91
661807--661833	11	2.5	11	100	0	54	62	0	11	25	1.28
664478--664502	12	2.1	12	100	0	50	8	0	40	52	1.31
665306--665356	20	2.5	22	79	17	56	29	15	25	29	1.96
670294--670375	37	2.2	37	95	0	146	34	24	13	28	1.93
671861--672154	146	2.0	147	97	1	554	32	19	6	41	1.76
672158--672195	19	2.0	19	89	0	58	47	10	0	42	1.38
678631--678665	18	1.9	18	94	0	61	31	8	37	22	1.85
680080--680122	15	3.0	15	76	13	54	30	32	16	20	1.95
680108--680156	23	2.1	23	88	0	71	22	24	20	32	1.98
682358--682461	24	4.3	24	80	0	100	25	16	17	40	1.90
684656--684713	13	4.1	14	79	16	66	24	31	22	22	1.99
685420--685460	17	2.4	17	84	8	57	70	4	0	24	1.06
693648--693681	18	1.9	17	88	5	50	64	5	0	29	1.17
694624--694745	34	3.7	34	72	20	123	42	10	15	31	1.81
695161--695185	2	12.5	2	100	0	50	48	0	0	52	1.00
698524--698566	22	2.0	21	86	9	59	74	9	13	2	1.16
699192--699240	22	2.2	22	92	0	80	32	24	14	28	1.94
699654--699689	18	2.0	18	88	0	54	19	8	30	41	1.81
700127--700438	72	4.4	73	78	10	251	25	18	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700169--700450	36	8.0	36	80	8	321	25	19	14	41	1.89
700267--700571	65	4.5	65	74	12	202	28	19	11	40	1.87
700225--700413	102	1.9	102	88	2	290	26	17	13	41	1.88
700189--700513	138	2.4	137	86	2	463	27	19	12	40	1.88
700169--700479	174	1.8	168	83	9	398	26	19	13	40	1.88
700408--700565	67	2.4	65	85	5	192	31	21	8	37	1.84
701184--701526	98	3.3	102	81	9	419	32	25	21	20	1.98
702075--702199	34	3.8	34	73	19	129	42	10	16	31	1.81
702612--702689	2	39.5	2	97	2	149	48	0	0	51	1.00
702749--702786	20	1.9	20	88	0	58	26	7	2	63	1.35
702797--702831	16	2.1	18	89	10	56	25	8	0	65	1.21
707235--707299	24	2.7	24	90	0	94	23	16	13	46	1.83
707346--707650	155	2.0	155	90	1	486	21	12	30	36	1.90
709566--709608	15	3.0	14	76	6	50	27	32	20	18	1.96
711873--711956	24	3.5	24	78	0	69	25	13	15	46	1.81
713898--713982	43	2.0	43	92	0	143	25	31	23	18	1.97
713912--713982	29	2.5	29	86	8	94	26	30	23	18	1.97
713916--713998	14	5.9	14	80	10	98	26	28	22	21	1.99
713997--714062	30	2.2	30	89	2	98	24	28	18	28	1.98
714029--714078	23	2.2	23	92	0	82	28	32	14	26	1.94
716136--716223	24	3.7	23	80	10	70	23	13	15	46	1.82
716250--716547	156	1.9	155	91	0	488	21	12	30	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718486--718850	180	2.0	184	97	2	693	36	9	13	40	1.77
719063--719170	31	3.5	31	93	0	180	28	14	14	41	1.86
721774--721851	32	2.4	32	100	0	156	39	14	33	12	1.84
725481--725561	2	40.0	2	90	2	126	45	1	3	49	1.27
726151--726203	21	2.5	21	81	6	72	20	26	18	33	1.96
726193--726244	21	2.5	21	87	3	70	38	17	23	21	1.93
726233--726367	20	6.7	20	83	5	146	31	26	18	22	1.97
726253--726387	41	3.3	40	82	6	173	33	25	17	22	1.96
726234--726387	81	1.9	81	89	0	236	32	25	18	23	1.97
726230--726347	61	1.9	61	91	0	191	33	26	17	22	1.96
726554--726595	22	1.9	22	90	0	66	21	42	16	19	1.89
727481--727519	14	2.8	14	84	0	51	35	0	17	46	1.49
727659--727749	19	4.8	19	98	0	173	48	15	20	15	1.81
727659--727761	38	2.8	36	92	7	149	46	16	21	15	1.84
727780--727856	20	3.8	20	92	1	118	15	22	22	40	1.91
728403--728495	20	4.7	20	87	0	123	26	20	24	27	1.99
729688--729782	44	2.2	44	96	0	172	37	13	5	43	1.67
731065--731128	9	6.6	9	74	15	56	17	4	0	78	0.92
731041--731084	16	2.7	16	83	13	54	15	2	2	79	0.93
731041--731138	25	3.8	25	77	9	83	17	5	1	76	1.02
731059--731138	21	3.9	21	76	12	85	17	6	0	76	0.99
731043--731128	5	16.8	5	70	25	56	17	4	1	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731263--731292	15	1.9	16	93	6	53	6	0	6	86	0.70
731393--731430	20	1.9	20	88	0	58	18	5	18	57	1.58
734627--734666	20	2.1	19	95	4	71	15	12	5	67	1.38
744806--744899	21	4.3	21	73	15	84	9	12	3	74	1.18
745665--745706	14	3.0	14	82	0	57	33	16	23	26	1.96
747351--747391	21	2.0	21	85	4	57	60	12	7	19	1.54
750980--751019	21	1.9	21	100	0	80	25	0	12	62	1.30
750983--751030	21	2.2	21	88	3	69	25	0	8	66	1.19
758740--758789	22	2.4	21	83	6	57	36	0	14	50	1.43
758894--758993	31	3.3	30	69	23	84	34	23	5	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10