genome.fa.s8281.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008281.1 Hibiscus syriacus cultivar Beakdansim tig00110943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2054746

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  7  of  10  ( 1093 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1321148--1321219	20	3.6	20	80	14	94	34	23	19	22	1.96
1321790--1321838	20	2.5	20	86	0	71	34	24	20	20	1.96
1321880--1321929	20	2.5	20	90	0	73	18	18	28	36	1.94
1321897--1321951	20	2.8	20	88	0	74	12	16	21	49	1.79
1321916--1321959	20	2.2	20	83	0	52	15	13	18	52	1.75
1323817--1323920	20	5.5	20	80	13	130	39	21	19	20	1.93
1323820--1323941	34	3.4	34	80	12	154	40	20	20	18	1.91
1323935--1324100	87	1.9	87	89	0	260	21	19	21	37	1.94
1323967--1324120	20	8.4	20	70	18	93	20	18	20	40	1.92
1326062--1326097	14	2.6	14	90	0	54	30	0	22	47	1.52
1326199--1326294	33	2.8	33	87	3	129	41	19	23	14	1.89
1326303--1326503	20	10.8	19	74	14	116	17	21	20	39	1.92
1326395--1326503	40	2.7	40	84	5	132	19	21	23	35	1.96
1329840--1329992	20	7.7	20	80	7	132	21	19	21	37	1.95
1334431--1334466	14	2.6	14	95	0	63	33	30	16	19	1.94
1337111--1337387	140	2.0	140	91	0	446	29	19	28	22	1.98
1338615--1338645	12	2.6	12	94	0	53	35	29	0	35	1.58
1340007--1340062	21	2.7	21	88	0	85	30	16	28	25	1.96
1341162--1341187	10	2.6	10	100	0	52	30	23	19	26	1.98
1342102--1342140	15	2.6	15	87	0	51	17	10	2	69	1.28
1342511--1342559	12	4.1	12	84	7	64	73	12	14	0	1.10
1342495--1342552	24	2.4	24	85	2	71	77	12	10	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1345133--1345168	9	4.0	9	100	0	72	22	11	11	55	1.66
1348058--1348461	200	2.0	202	99	0	794	25	15	23	35	1.94
1356067--1356106	2	20.0	2	100	0	80	50	0	0	50	1.00
1356483--1356526	18	2.3	19	80	15	54	38	18	13	29	1.89
1357317--1357349	16	2.0	17	88	5	50	45	24	9	21	1.80
1357816--1357848	12	2.6	13	85	4	50	39	33	12	15	1.84
1398862--1399076	55	3.9	55	86	0	286	26	20	16	35	1.94
1398862--1399067	110	1.9	110	88	2	315	27	21	16	35	1.94
1399395--1399434	20	2.0	20	90	0	62	32	22	12	32	1.91
1399495--1399544	20	2.5	20	87	6	66	20	28	16	36	1.93
1399509--1399546	20	1.9	20	94	0	67	18	28	13	39	1.88
1407512--1407536	13	1.9	13	100	0	50	64	0	32	4	1.12
1407507--1407579	26	2.8	26	77	6	67	75	1	20	2	1.00
1407506--1407591	27	3.2	27	68	20	65	73	1	22	3	1.05
1407546--1407599	15	3.9	14	81	13	67	79	0	18	1	0.82
1409955--1410047	31	3.0	31	82	7	100	48	3	1	47	1.25
1410187--1410238	13	4.0	13	84	0	68	26	19	19	34	1.95
1410391--1410417	2	13.5	2	100	0	54	48	0	0	51	1.00
1413014--1413444	107	4.0	108	84	7	477	30	24	16	28	1.96
1413014--1413444	55	8.0	55	85	8	469	30	24	16	28	1.96
1413444--1413526	37	2.2	37	91	4	132	20	19	18	42	1.90
1414804--1414916	8	13.9	8	68	22	58	7	18	0	73	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414793--1414934	25	5.9	23	71	23	98	7	19	0	73	1.10
1414821--1414879	13	4.5	13	83	12	68	5	16	1	76	1.05
1414834--1414889	13	4.5	13	76	8	55	7	17	1	73	1.15
1414868--1414929	18	3.3	18	80	14	56	8	17	1	72	1.17
1414868--1414916	18	2.6	19	81	12	57	8	18	2	71	1.21
1414801--1414929	8	15.2	8	67	22	52	6	17	0	74	1.08
1424558--1424646	45	1.9	47	93	4	155	38	23	11	26	1.89
1432453--1432490	15	2.4	16	86	8	51	47	18	13	21	1.82
1437471--1437519	22	2.2	22	96	0	89	28	24	14	32	1.94
1437471--1437527	22	2.6	21	89	8	71	26	26	12	35	1.92
1437568--1437630	20	3.2	19	71	8	54	28	15	26	28	1.96
1439063--1439104	2	21.0	2	100	0	84	50	0	0	50	1.00
1441106--1441425	79	4.1	79	86	2	428	35	10	23	30	1.89
1441791--1441965	81	2.2	81	84	0	215	40	8	24	27	1.83
1442019--1442049	2	15.5	2	100	0	62	51	0	0	48	1.00
1442086--1442193	44	2.4	44	83	9	112	50	7	20	21	1.72
1442086--1442211	45	2.8	44	82	8	121	48	7	21	23	1.74
1446413--1446814	79	5.1	79	87	3	551	35	9	23	31	1.86
1447179--1447353	81	2.2	81	85	0	224	39	9	24	27	1.85
1447483--1447585	44	2.3	45	83	5	118	45	5	23	25	1.75
1474700--1474907	97	2.1	97	81	6	235	41	19	11	27	1.86
1486156--1486189	17	2.1	16	88	5	50	14	8	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1486709--1486743	17	1.9	19	88	11	56	37	5	17	40	1.73
1486831--1486891	31	2.0	31	83	6	79	19	18	45	16	1.85
1488664--1488695	2	16.0	2	100	0	64	50	0	0	50	1.00
1494957--1495017	14	4.3	14	87	2	77	18	19	39	22	1.92
1495808--1495864	22	2.6	21	91	5	87	29	19	22	28	1.98
1495743--1495955	116	1.8	116	84	4	295	35	17	23	23	1.95
1496754--1496940	68	2.7	69	89	4	286	30	13	23	32	1.94
1496959--1497482	79	6.6	79	91	0	832	36	11	23	28	1.90
1497463--1497562	45	2.2	46	82	7	123	48	9	18	25	1.77
1500176--1500361	94	2.0	94	84	4	241	34	17	23	24	1.96
1500731--1500928	59	3.4	59	78	2	222	37	9	18	35	1.82
1501234--1501486	68	3.7	67	91	1	398	32	13	24	30	1.93
1501506--1501694	79	2.4	79	93	2	319	36	8	25	29	1.86
1504163--1504214	18	2.9	18	85	8	70	21	44	15	19	1.87
1506715--1506787	24	3.0	24	79	0	92	20	10	16	52	1.74
1510221--1510303	23	3.7	23	75	8	89	25	25	24	25	2.00
1512238--1512295	28	2.0	28	83	9	73	18	3	22	55	1.58
1512466--1512494	2	14.5	2	100	0	58	48	0	0	51	1.00
1512978--1513121	65	2.2	65	83	8	179	29	24	18	28	1.98
1513852--1514280	79	5.4	79	89	0	644	37	10	22	29	1.88
1542534--1542613	21	3.8	21	86	0	115	35	17	16	31	1.92
1545962--1546002	20	2.0	21	85	4	57	58	2	2	36	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1546892--1546927	17	2.1	17	89	5	54	0	19	8	72	1.10
1547425--1547513	3	29.7	3	95	0	160	64	0	1	34	1.01
1547994--1548100	40	2.5	43	88	10	159	17	25	9	47	1.77
1547767--1548057	113	2.6	114	92	2	471	28	21	10	38	1.87
1547761--1548323	270	2.1	267	92	3	918	29	20	11	38	1.88
1547881--1548213	157	2.2	152	91	4	542	26	21	11	40	1.87
1548034--1548459	113	3.7	114	91	3	662	28	20	12	38	1.89
1549021--1549516	83	5.7	86	92	5	661	35	21	15	27	1.93
1550279--1550320	19	2.2	20	91	4	68	52	11	4	30	1.59
1550649--1550700	10	5.0	10	79	9	59	0	19	0	80	0.71
1550648--1550695	6	7.7	6	78	17	53	0	20	0	79	0.74
1550650--1550701	27	1.9	27	85	14	72	0	21	0	78	0.74
1562847--1562881	17	2.1	17	94	0	61	2	17	5	74	1.14
1563361--1563427	3	22.7	3	85	8	93	62	0	1	35	1.04
1564055--1564084	15	1.9	15	93	6	51	46	0	0	53	1.00
1565524--1565902	188	2.0	188	97	2	717	34	12	18	34	1.88
1567025--1567224	104	1.9	102	93	6	348	32	12	28	28	1.92
1567555--1567634	21	3.8	21	86	0	115	35	17	16	31	1.92
1570953--1570993	20	2.0	21	85	4	57	58	2	2	36	1.24
1571880--1571915	17	2.1	17	89	5	54	2	19	5	72	1.17
1572413--1572494	3	27.7	3	95	2	148	64	0	1	34	1.01
1576612--1576695	21	4.0	21	87	0	123	32	19	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1582007--1582130	45	2.8	45	88	3	180	28	22	8	41	1.82
1582255--1582453	40	5.0	40	92	0	317	35	25	16	23	1.95
1585171--1585241	2	37.0	2	88	8	112	47	0	1	50	1.09
1585171--1585241	15	4.6	16	89	8	112	47	0	1	50	1.09
1590366--1590395	2	15.0	2	92	0	51	46	0	0	53	1.00
1590403--1590428	5	5.2	5	100	0	52	80	0	0	19	0.71
1592370--1593157	45	17.5	45	88	2	1064	34	21	21	23	1.97
1593833--1593911	22	3.6	22	92	0	131	36	13	15	34	1.87
1594298--1594624	54	6.1	53	80	6	336	26	20	13	39	1.90
1594302--1594625	108	3.0	108	86	1	454	26	20	13	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10