genome.fa.s8301.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008301.1 Hibiscus syriacus cultivar Beakdansim tig00110987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3376434

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  15  of  18  ( 2065 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2813262--2813305	23	2.0	22	86	13	63	50	4	9	36	1.55
2816082--2816247	71	2.3	70	78	4	199	16	16	22	43	1.87
2817701--2817753	2	26.5	2	90	7	63	49	7	0	43	1.31
2819825--2819891	34	2.0	34	85	11	93	47	7	2	41	1.47
2820979--2821044	15	4.1	16	87	12	91	21	21	19	37	1.94
2823205--2823495	147	2.0	143	96	2	537	28	23	11	36	1.89
2826286--2826456	82	2.0	83	89	10	260	18	29	18	34	1.94
2833301--2833327	14	1.9	14	100	0	54	37	0	25	37	1.57
2835345--2835390	23	2.0	23	86	0	65	30	26	23	19	1.98
2842234--2842298	23	2.8	23	75	9	78	27	23	26	23	2.00
2844093--2844183	31	2.9	31	86	0	128	23	20	24	31	1.98
2844187--2844221	18	1.9	18	94	0	61	34	14	28	22	1.93
2845726--2845818	21	4.6	20	78	4	96	38	18	24	18	1.92
2845723--2845818	41	2.3	41	98	0	183	39	17	23	18	1.92
2845726--2845818	20	4.6	20	78	4	96	38	18	24	18	1.92
2845804--2845881	41	1.9	41	84	5	104	39	20	16	23	1.92
2845849--2845901	20	2.7	20	93	0	88	28	28	18	24	1.98
2846089--2846132	22	2.0	22	95	0	79	20	45	15	18	1.85
2846394--2846431	20	1.9	20	88	0	58	13	15	21	50	1.78
2847751--2847795	18	2.5	18	85	0	63	26	42	15	15	1.87
2848261--2848306	20	2.3	20	85	7	58	36	26	19	17	1.94
2848316--2848404	14	5.8	14	75	19	88	48	25	16	8	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2848300--2848422	32	3.8	33	95	2	214	47	23	17	10	1.79
2848439--2848496	14	3.9	14	79	16	71	8	17	25	48	1.75
2848434--2848495	32	1.9	32	100	0	124	8	17	25	48	1.75
2848439--2848530	48	2.0	46	87	8	132	10	19	25	44	1.83
2850669--2850706	7	5.4	7	96	0	67	26	26	28	18	1.98
2850703--2850743	5	7.8	5	84	10	55	4	21	53	19	1.63
2850696--2850750	22	2.5	22	100	0	110	10	23	47	18	1.80
2850746--2850864	19	6.2	18	78	13	96	29	29	26	14	1.95
2850746--2850884	48	2.9	48	87	7	176	30	28	26	15	1.96
2850746--2850864	29	4.1	29	80	13	56	29	29	26	14	1.95
2850763--2850885	10	12.8	9	81	11	102	30	27	26	15	1.96
2858046--2858103	5	10.8	5	78	14	62	6	22	51	18	1.70
2858019--2858049	7	4.4	7	95	0	53	25	25	29	19	1.99
2858032--2858110	22	3.5	22	94	3	131	12	24	45	17	1.83
2858039--2858076	17	2.2	17	100	0	76	10	23	47	18	1.79
2858106--2858197	19	4.7	19	75	14	73	30	27	25	17	1.97
2858123--2858197	29	2.5	31	85	8	111	30	26	25	17	1.97
2858123--2858197	9	7.8	9	77	11	60	30	26	25	17	1.97
2860308--2860375	19	3.8	19	85	14	101	47	17	22	13	1.82
2860394--2860451	20	2.9	20	94	0	98	17	22	22	37	1.93
2861510--2861563	24	2.2	24	90	0	81	24	16	20	38	1.92
2864058--2864114	14	3.7	14	72	20	51	42	21	26	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2864040--2864133	33	2.8	33	96	0	170	43	20	24	11	1.85
2864020--2864137	19	6.7	19	71	19	85	42	21	23	12	1.87
2864133--2864175	20	2.2	20	87	4	61	16	18	23	41	1.89
2864161--2864194	14	2.4	14	85	0	50	8	23	20	47	1.78
2864316--2864352	14	2.6	14	91	0	65	45	24	0	29	1.53
2867295--2867438	20	7.9	19	68	18	65	43	22	22	12	1.86
2867320--2867418	33	3.0	33	89	1	144	39	26	23	11	1.88
2868002--2868095	20	4.7	20	80	2	89	23	18	24	34	1.96
2868023--2868157	41	3.3	41	81	4	130	20	21	20	37	1.94
2868084--2868176	20	4.6	20	78	4	96	18	24	18	38	1.92
2868084--2868179	41	2.3	41	98	0	183	18	23	17	39	1.92
2869036--2869210	20	8.6	20	80	6	199	13	22	24	40	1.90
2869056--2869279	41	5.4	41	90	4	328	15	21	23	39	1.92
2869055--2869279	123	1.8	124	90	4	366	15	21	23	39	1.91
2869202--2869273	22	3.4	22	73	11	87	18	19	25	37	1.94
2869223--2869288	19	3.3	19	72	12	69	18	19	21	40	1.91
2869012--2869251	61	3.9	60	77	8	218	16	20	23	39	1.92
2869372--2869409	6	6.5	6	96	3	69	31	52	15	0	1.43
2869904--2869964	5	11.6	5	94	1	86	0	19	54	26	1.45
2878312--2878423	30	3.7	30	86	4	163	62	9	11	16	1.54
2878311--2878439	30	4.3	30	83	3	161	61	11	10	16	1.57
2879969--2880020	3	17.7	3	86	11	72	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2880384--2880459	40	1.9	40	86	5	109	27	13	40	18	1.88
2880295--2880550	132	1.9	132	85	3	354	25	16	33	23	1.96
2880289--2880587	133	2.3	131	80	5	350	26	16	33	23	1.95
2880720--2880846	66	1.9	65	90	7	204	40	15	13	29	1.86
2885995--2886101	30	3.6	30	77	5	117	59	10	11	18	1.59
2886212--2886422	107	2.0	107	94	0	368	52	15	13	18	1.75
2890726--2890773	25	1.9	25	86	0	69	47	0	10	41	1.37
2903271--2903331	20	2.9	20	85	7	59	24	32	24	18	1.97
2906113--2906150	20	1.9	20	94	0	67	21	36	21	21	1.95
2909644--2909688	23	2.0	23	95	0	81	22	26	26	24	2.00
2909677--2909719	21	2.1	21	82	4	52	23	34	27	13	1.93
2910397--2910439	21	2.0	22	86	4	61	27	46	0	25	1.53
2913047--2913272	28	7.8	31	73	17	116	42	3	6	46	1.48
2913078--2913272	39	4.6	44	71	17	135	42	4	6	47	1.47
2913152--2913263	14	8.2	14	71	16	92	43	4	4	47	1.43
2913158--2913277	28	4.4	28	88	7	167	45	3	4	47	1.38
2913197--2913287	14	6.5	14	77	9	87	47	2	3	47	1.31
2915386--2915734	172	2.0	172	96	1	637	36	18	3	41	1.67
2916197--2916305	23	4.9	23	86	7	145	24	42	22	11	1.86
2916749--2916908	60	2.7	60	86	1	223	29	16	18	35	1.93
2943980--2944240	20	12.6	20	75	10	159	37	20	24	17	1.93
2944340--2944430	12	8.2	12	97	2	126	27	54	17	0	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2944340--2944430	18	5.5	18	96	3	126	27	54	17	0	1.43
2944344--2944430	25	3.2	27	91	8	133	26	55	18	0	1.43
2944344--2944433	5	16.6	5	98	1	117	26	54	18	0	1.44
2945119--2945288	6	29.5	6	99	0	291	0	17	52	30	1.45
2945365--2945404	20	2.0	20	90	0	62	12	17	17	52	1.74
2945397--2945547	20	7.4	20	88	4	194	18	26	18	36	1.94
2945377--2945552	40	4.3	41	74	13	148	17	25	17	39	1.91
2945395--2945568	83	2.1	83	91	0	276	18	26	18	36	1.94
2945397--2945545	63	2.4	60	81	6	190	18	26	18	35	1.95
2945558--2945610	21	2.5	21	100	0	106	16	24	33	24	1.96
2945395--2945713	20	15.6	20	80	7	140	17	23	21	38	1.93
2952992--2953040	24	2.1	24	85	11	66	59	0	6	34	1.22
2952999--2953046	24	2.0	25	83	4	62	62	0	6	31	1.20
2955858--2955882	13	1.9	13	100	0	50	28	24	8	40	1.83
2956492--2956730	118	2.0	118	90	4	376	41	9	9	38	1.71
2958443--2958651	104	2.0	104	97	0	391	41	23	12	22	1.88
2969165--2969211	20	2.2	22	81	11	62	21	6	19	53	1.67
2969382--2969533	78	1.9	78	92	2	252	24	11	22	42	1.86
2977478--2977506	6	4.8	6	100	0	58	34	51	13	0	1.42
2985661--2985761	51	2.0	51	88	0	148	26	17	11	43	1.84
2994039--2994079	20	2.0	20	100	0	82	29	19	4	46	1.71
2999436--2999672	131	1.8	131	83	5	318	40	15	11	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3000263--3000336	29	2.6	28	81	10	87	63	9	6	20	1.47
3001896--3001928	3	11.0	3	100	0	66	66	0	0	33	0.92
3002111--3002943	134	6.2	133	85	2	1030	29	15	23	31	1.95
3003263--3003324	20	3.0	22	72	15	60	22	22	25	29	1.99
3003263--3003468	41	5.0	41	75	8	175	29	20	23	26	1.99
3003263--3003468	83	2.5	83	91	1	324	29	20	23	26	1.99
3003604--3003704	41	2.5	41	80	4	123	31	23	19	24	1.98
3005361--3005424	3	21.3	3	90	0	83	59	1	4	34	1.28
3009934--3010054	58	2.1	59	93	1	208	23	25	14	36	1.93
3023805--3023863	22	2.8	22	82	10	61	45	0	5	49	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18