Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008301.1 Hibiscus syriacus cultivar Beakdansim tig00110987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3376434

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2065 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3331851--3331954
47
2.2
47
98
0
199
57
8
8
25
1.57
3334487--3334518
6
5.3
6
100
0
64
84
0
15
0
0.63
3335145--3335313
60
2.8
60
74
5
162
31
22
4
40
1.75
3335847--3335914
29
2.4
29
87
2
93
44
7
20
27
1.78
3336437--3336497
3
20.3
3
93
6
106
34
0
0
65
0.93
3338203--3338262
27
2.2
27
96
0
111
45
8
13
33
1.73
3338542--3338896
130
2.7
132
80
3
412
34
11
15
39
1.83
3345128--3345856
233
3.1
231
83
6
784
34
14
17
33
1.91
3345554--3345637
42
2.0
42
81
4
98
28
19
22
29
1.98
3348293--3348340
18
2.8
17
81
6
60
60
14
4
20
1.51
3351805--3351862
27
2.1
27
81
6
64
29
12
13
44
1.80
3352257--3352321
19
3.4
19
87
4
78
32
13
33
20
1.91
3355022--3355056
7
4.9
7
86
6
52
82
0
5
11
0.82
3356164--3356511
131
2.7
131
78
6
357
34
11
15
39
1.83
3359375--3359423
21
2.3
21
96
0
89
46
22
2
28
1.63
3363123--3363159
2
19.5
2
89
10
60
48
0
0
51
1.00
3364094--3364141
24
2.0
24
100
0
96
16
16
20
45
1.85
3365638--3365674
11
3.3
11
88
3
56
10
10
0
78
0.97
3367316--3367365
2
25.5
2
87
4
75
50
0
0
50
1.00
3368286--3368318
15
2.1
16
88
5
50
54
0
3
42
1.15
3368476--3368585
29
3.7
28
76
20
91
60
1
5
31
1.30
3368477--3368548
30
2.4
30
80
19
89
65
2
4
27
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3369690--3369754
3
22.0
3
81
12
73
64
0
1
33
1.03
3370009--3370583
45
12.8
45
88
1
839
32
21
22
23
1.98
3371653--3371814
54
3.0
54
95
0
279
24
23
16
36
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!