genome.fa.s8301.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008301.1 Hibiscus syriacus cultivar Beakdansim tig00110987_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3376434

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  5  of  18  ( 2065 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624056--624083	7	4.0	7	100	0	56	42	28	28	0	1.56
626410--626447	2	19.0	2	100	0	76	50	0	50	0	1.00
626889--627007	59	2.0	58	79	6	132	39	13	4	42	1.63
627864--627931	34	2.0	34	100	0	136	32	26	14	26	1.95
630254--630283	15	2.0	15	100	0	60	20	6	13	60	1.55
631927--632016	29	3.0	30	68	11	76	30	21	15	33	1.94
633193--633224	14	2.3	14	94	0	55	28	0	6	65	1.16
634971--634998	14	2.0	14	100	0	56	42	7	7	42	1.59
635933--635967	17	2.1	17	88	0	52	34	0	2	62	1.10
636147--636182	18	2.1	18	94	5	65	27	25	22	25	2.00
636269--636329	32	1.9	32	93	0	104	40	8	16	34	1.78
637832--637882	22	2.3	22	86	3	66	35	19	19	25	1.95
638673--638744	22	3.3	22	88	3	101	34	19	20	25	1.96
639562--639600	20	1.9	21	85	15	55	35	30	0	33	1.58
645376--645432	29	2.0	29	82	6	71	49	7	14	29	1.69
646561--646590	2	15.5	2	93	6	53	50	0	0	50	1.00
646597--646637	10	4.1	10	81	12	57	48	0	12	39	1.41
647718--647785	23	3.0	23	73	0	64	22	17	22	38	1.93
662146--662439	38	7.9	35	79	10	270	45	4	5	44	1.46
662156--662439	76	3.8	75	83	9	311	45	4	5	44	1.46
662550--662594	17	2.6	17	85	0	72	33	28	22	15	1.95
663739--663781	23	1.9	23	90	4	70	18	16	4	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663859--663910	26	2.0	27	92	3	88	13	9	5	71	1.30
663866--663944	28	2.9	29	85	7	94	16	10	5	68	1.36
664340--664401	25	2.5	25	97	0	115	25	3	14	56	1.53
668521--668666	31	4.7	30	80	5	148	27	31	27	13	1.94
668537--668666	62	2.1	62	89	0	197	27	32	27	12	1.92
668537--668666	31	4.2	31	83	0	161	27	32	27	12	1.92
671153--671184	16	2.0	16	93	0	55	28	31	25	15	1.96
672632--672668	14	2.6	14	82	0	56	29	27	16	27	1.97
687391--687436	21	2.2	21	100	0	92	17	21	15	45	1.85
690235--690276	21	2.0	21	85	0	57	14	0	19	66	1.25
690645--690710	3	21.3	3	82	11	80	63	1	1	33	1.13
690645--690712	28	2.4	28	85	4	102	64	1	1	32	1.11
690994--691276	137	2.1	137	83	2	345	27	14	28	28	1.95
692299--692357	19	3.0	19	80	5	64	6	15	1	76	1.07
699088--699138	7	7.3	7	77	14	52	54	11	15	17	1.70
699088--699138	22	2.5	20	79	17	59	54	11	15	17	1.70
702736--702826	44	2.0	46	85	4	123	37	26	23	13	1.91
702914--702970	28	2.0	30	83	13	75	40	15	5	38	1.70
702907--703077	45	3.8	45	82	6	204	37	16	6	39	1.75
702902--703077	89	2.0	91	83	6	225	37	17	6	38	1.75
714060--714098	20	2.0	20	89	0	60	33	23	10	33	1.88
722776--722851	23	3.5	22	68	13	66	36	25	22	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722927--723101	45	3.9	45	74	7	169	35	18	7	38	1.79
723165--723214	19	2.9	16	75	16	55	46	20	12	22	1.83
725541--725678	63	2.2	62	93	2	231	44	13	3	38	1.61
727403--727463	24	2.5	25	86	5	81	36	18	21	24	1.95
733292--733339	23	2.1	23	88	7	71	47	0	0	52	1.00
733266--733326	19	3.4	18	75	20	65	52	0	0	47	1.00
733434--733477	12	3.8	12	85	5	56	54	2	0	43	1.12
733415--733500	29	2.9	30	78	13	81	54	2	2	40	1.26
733434--733485	17	3.2	17	78	13	56	51	1	0	46	1.12
733986--734049	32	2.0	32	93	0	110	40	7	14	37	1.74
736567--736638	35	2.1	35	94	0	126	40	8	20	30	1.82
737666--737733	18	3.8	18	76	19	63	16	10	1	72	1.19
745874--746717	106	8.0	106	86	4	1088	33	22	19	23	1.97
745973--746573	305	2.0	306	90	0	943	34	22	19	23	1.96
747201--747270	35	2.0	35	97	0	131	41	11	18	28	1.85
747647--747686	18	2.3	18	83	8	57	25	5	2	67	1.23
749000--749056	26	2.2	25	93	3	96	49	14	7	29	1.69
749451--749855	55	7.4	55	87	1	564	34	18	18	28	1.94
749451--749855	109	3.7	110	88	1	564	34	18	18	28	1.94
753427--753488	24	2.6	24	94	0	106	12	12	20	53	1.72
757627--757950	55	5.9	55	89	1	445	35	17	16	30	1.92
757627--757950	110	3.0	110	90	0	506	35	17	16	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757603--757950	165	2.1	164	88	0	498	35	17	16	31	1.92
763725--764098	55	6.8	55	86	1	500	34	15	17	32	1.91
765437--765464	13	2.2	13	100	0	56	53	0	7	39	1.28
774087--774125	20	2.0	20	89	0	60	48	15	15	20	1.81
774122--774156	14	2.5	14	95	0	61	45	8	28	17	1.77
776351--776455	42	2.5	42	84	7	133	59	7	12	20	1.58
776366--776447	22	3.8	20	70	22	51	57	8	13	20	1.62
776359--776457	21	4.8	20	69	14	65	60	7	11	21	1.53
778293--778333	19	2.2	19	86	0	55	43	2	0	53	1.13
780606--780678	36	2.0	37	81	7	87	30	12	15	42	1.83
780698--780750	17	3.1	17	83	0	61	37	15	7	39	1.75
781694--781750	17	3.3	17	85	7	62	36	12	10	40	1.77
787824--787879	15	3.7	15	87	2	76	60	12	19	7	1.55
789221--789327	45	2.4	45	84	7	119	31	19	18	29	1.96
794437--794461	13	1.9	13	100	0	50	40	8	8	44	1.63
801316--801395	21	3.6	23	75	11	87	26	22	26	25	2.00
801383--801434	20	2.6	20	100	0	104	28	28	25	17	1.97
803353--803445	2	46.5	2	100	0	186	49	0	0	50	1.00
803968--804075	46	2.3	46	91	0	171	31	20	18	29	1.96
804052--804094	19	2.4	19	84	7	54	23	27	20	27	1.99
804345--805030	6	117.7	6	92	7	1168	33	0	0	66	0.92
805087--805300	85	2.5	85	82	7	265	34	18	19	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805280--805323	13	3.4	13	83	0	61	29	18	20	31	1.96
814444--814494	23	2.3	23	83	6	70	19	41	17	21	1.91
816758--816844	35	2.5	35	96	0	165	36	0	29	33	1.58
818686--818732	21	2.2	21	92	0	85	36	12	17	34	1.87
826560--826593	2	17.0	2	100	0	68	50	0	0	50	1.00
837154--837257	36	2.9	36	88	0	154	41	13	16	28	1.86
841979--842023	13	3.5	13	79	11	56	33	17	17	31	1.94
847924--848383	117	3.9	117	91	0	733	23	20	25	30	1.98
853169--853298	66	2.0	66	98	0	251	36	23	21	18	1.95
855958--856250	54	5.6	53	79	11	309	35	11	17	35	1.86
856006--856092	43	2.0	43	93	0	147	39	11	16	33	1.84
855958--856244	98	2.8	102	84	8	352	35	11	17	35	1.86
856054--856255	109	1.9	109	87	1	289	35	11	17	35	1.87
860878--860968	24	3.8	24	76	2	94	36	18	17	27	1.94
865750--865841	24	3.9	24	72	5	80	38	15	17	29	1.90
871162--871397	56	4.3	55	86	2	285	31	17	15	34	1.92
884747--884794	20	2.4	20	96	0	87	25	39	18	16	1.91
904882--904964	43	1.9	43	90	0	130	39	9	16	33	1.82
904927--905125	109	1.8	108	86	3	292	34	11	17	37	1.85
904925--905126	54	3.7	54	85	2	253	34	10	17	37	1.85
910992--911313	54	5.9	54	83	3	358	33	14	14	37	1.87
910992--911262	110	2.5	109	87	3	393	33	14	14	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939963--940042	39	2.1	39	97	0	151	31	12	15	41	1.84
942557--942599	19	2.3	18	88	4	59	37	11	16	34	1.85
944707--944753	16	3.1	15	79	8	51	23	2	6	68	1.24
944738--944797	23	2.6	24	73	7	61	36	1	10	51	1.45
957275--957309	18	1.9	18	88	11	54	28	20	31	20	1.97
962089--962126	17	2.3	17	90	4	60	57	5	0	36	1.21
973397--973455	23	2.6	23	86	0	73	40	8	18	32	1.81
973369--973531	87	1.9	87	94	0	290	40	11	15	32	1.83
973484--973531	23	2.1	23	92	0	78	35	8	18	37	1.81
973558--974046	198	2.5	198	84	4	632	30	15	14	39	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18