genome.fa.s8302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008302.1 Hibiscus syriacus cultivar Beakdansim tig00110988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3402722

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  1  of  17  ( 1926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615--679	30	2.2	30	97	0	121	26	35	23	15	1.94
3761--3880	57	2.1	57	100	0	240	30	8	18	43	1.79
5255--5318	19	3.2	20	72	14	53	43	1	1	53	1.19
5264--5313	20	2.5	20	78	12	59	40	2	2	56	1.22
5231--5317	31	2.8	30	81	10	95	41	2	3	52	1.31
6431--6485	25	2.2	25	84	15	69	50	1	0	47	1.11
11424--11897	200	2.4	199	82	7	575	31	14	14	39	1.86
14406--14438	16	2.1	16	100	0	66	57	24	12	6	1.57
14508--14572	16	4.1	16	93	0	112	56	21	12	9	1.63
14504--14578	10	7.7	10	68	21	52	57	20	12	10	1.64
15301--15369	24	2.9	24	89	4	95	57	18	10	13	1.63
15320--15370	14	3.9	14	75	19	56	56	23	9	9	1.61
16414--17176	200	3.8	198	78	6	806	32	15	13	37	1.87
17474--17526	25	2.1	25	100	0	106	49	11	3	35	1.57
20549--20591	21	2.0	21	95	0	77	20	39	18	20	1.93
20601--20640	21	1.9	21	94	0	71	20	37	22	20	1.94
20625--20686	23	2.7	23	92	0	106	22	30	19	27	1.98
23572--23649	21	3.7	21	98	0	147	20	39	19	20	1.92
24047--24116	34	2.1	32	86	5	95	31	12	30	25	1.93
24358--24926	200	2.8	200	93	0	967	34	15	11	37	1.84
25193--25237	19	2.4	19	96	0	81	55	8	2	33	1.43
26790--26847	19	3.1	19	87	2	91	3	34	0	62	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26790--26848	18	3.2	18	85	4	91	3	35	0	61	1.13
27032--27103	33	2.2	33	92	0	117	22	47	1	29	1.60
27132--27175	21	2.1	21	100	0	88	13	34	9	43	1.76
29515--30733	182	6.7	182	90	1	1773	27	17	14	41	1.88
30941--31006	30	2.2	31	88	2	98	40	4	12	42	1.62
33509--33585	31	2.5	31	84	0	100	36	14	25	23	1.93
35590--35663	31	2.4	30	82	6	85	29	27	9	33	1.88
36255--36341	32	2.7	31	78	3	93	39	21	11	27	1.88
40127--40182	27	2.1	27	96	0	103	35	12	17	33	1.88
42431--42488	27	2.2	27	96	3	109	37	31	6	24	1.82
42674--42722	13	3.5	13	75	20	53	40	0	0	59	0.98
42677--42741	30	2.2	30	81	10	71	40	0	3	56	1.15
49891--49949	29	2.0	29	100	0	118	49	13	13	23	1.78
54577--54635	29	2.0	29	100	0	118	49	13	13	23	1.78
61193--61224	15	2.1	16	94	5	57	6	25	18	50	1.70
61973--62006	16	2.1	16	94	0	59	32	26	8	32	1.87
65678--65740	29	2.1	29	85	2	81	30	25	12	31	1.93
70102--70178	31	2.5	31	89	0	109	24	25	14	35	1.93
71870--71944	23	3.3	23	98	0	141	40	32	4	24	1.73
72170--72235	30	2.2	30	88	0	96	30	12	28	28	1.93
93205--93272	23	3.2	22	68	20	63	33	19	17	29	1.95
93197--93297	41	2.5	41	91	0	157	30	18	17	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94626--94729	33	3.3	30	74	16	84	12	8	19	59	1.58
94630--94751	10	11.2	10	68	17	57	11	10	19	58	1.62
94645--94768	24	5.4	24	70	10	98	12	10	20	57	1.64
96394--96447	2	27.5	2	96	3	101	50	0	0	50	1.00
98342--98392	26	2.0	26	88	0	75	13	21	31	33	1.92
98710--98926	106	2.0	106	90	0	344	20	19	26	33	1.96
99427--99480	18	3.0	18	94	0	90	44	33	5	16	1.71
99898--99951	22	2.5	22	87	0	81	25	9	27	37	1.87
100434--100462	11	2.5	12	88	11	51	6	17	20	55	1.65
100593--100662	31	2.2	31	80	12	81	0	17	7	75	1.01
100594--100660	24	2.8	23	78	17	73	0	16	5	77	0.95
100593--100660	8	8.5	8	71	12	50	0	16	5	77	0.95
104755--104810	17	3.3	17	78	9	53	51	1	0	46	1.11
104938--105114	56	3.2	56	87	3	268	28	18	12	40	1.87
104917--105114	55	3.6	55	86	2	270	28	17	14	39	1.89
107558--107650	46	2.0	46	97	0	177	39	10	13	35	1.80
117708--117754	20	2.4	19	79	10	58	53	12	14	19	1.73
120154--120218	21	3.1	21	84	8	87	43	9	30	16	1.80
120252--120317	33	2.0	33	90	0	105	28	0	48	22	1.51
122112--122160	19	2.6	19	96	0	89	32	2	10	55	1.45
122273--123507	200	6.2	200	96	0	2281	36	15	17	31	1.91
125084--125171	6	14.7	6	78	0	86	40	9	31	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125084--125171	12	7.3	12	88	0	131	40	9	31	18	1.81
125097--125198	6	17.5	6	75	6	84	38	11	32	17	1.86
126411--126986	183	3.2	182	96	1	1041	34	14	16	34	1.90
128728--128766	20	1.9	21	84	5	53	35	2	0	61	1.10
128902--128945	21	2.0	22	82	4	54	45	0	6	47	1.29
129234--129294	20	2.8	22	85	11	74	67	1	1	29	1.10
130537--130585	3	16.7	3	83	12	57	63	0	0	36	0.95
130898--131791	113	7.9	113	91	1	1211	28	19	14	37	1.91
132197--132251	22	2.5	22	84	0	74	34	16	14	34	1.89
133495--133735	75	3.2	75	84	2	288	31	22	14	31	1.94
134852--135181	115	2.9	115	89	0	491	31	20	15	32	1.94
140020--140073	14	3.8	14	85	2	63	53	7	14	24	1.66
140034--140095	28	2.2	28	80	13	74	53	8	12	25	1.66
141533--141589	18	3.3	16	75	17	60	66	0	3	29	1.08
141555--141614	25	2.5	25	81	10	72	61	0	6	31	1.22
142219--142262	21	2.0	22	82	4	54	45	0	6	47	1.29
142551--142611	20	2.8	22	85	11	74	67	1	1	29	1.10
143890--143935	3	15.7	3	82	13	60	65	0	0	34	0.93
145368--145417	23	2.2	23	88	0	73	36	6	20	38	1.77
145782--145841	23	2.6	23	83	0	66	41	6	16	35	1.75
145802--145854	23	2.3	23	90	0	88	33	5	18	41	1.74
146330--146377	23	2.1	23	92	0	78	33	16	12	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148789--148832	22	2.1	20	83	8	52	50	0	6	43	1.29
148809--148891	44	1.9	44	85	11	118	43	6	4	45	1.49
152708--152763	5	11.6	5	94	1	53	0	41	30	28	1.57
152719--152763	10	4.5	10	91	0	63	0	40	31	28	1.57
152716--152763	15	3.2	15	87	0	69	0	39	31	29	1.57
152760--152784	6	4.2	6	100	0	50	0	16	48	36	1.46
158380--158418	5	7.8	5	91	0	51	2	41	33	23	1.68
158416--158494	6	13.2	6	97	0	140	2	16	49	31	1.59
158769--158823	22	2.5	22	75	0	56	29	9	23	38	1.85
167575--167612	20	1.9	20	94	0	67	57	7	2	31	1.41
168730--168796	6	11.2	6	96	0	125	32	49	16	1	1.55
168794--168832	5	7.8	5	91	0	51	23	33	41	2	1.68
174418--174454	6	6.2	6	100	0	74	35	48	16	0	1.46
174452--174495	5	8.8	5	97	0	61	27	31	40	0	1.56
174451--174498	15	3.2	15	87	0	69	29	31	39	0	1.57
174451--174506	5	11.6	5	94	1	53	28	30	41	0	1.57
178333--178416	44	1.9	44	86	13	120	46	4	5	42	1.49
180994--181031	6	6.3	6	100	0	76	34	47	18	0	1.49
181029--181092	5	12.8	5	94	0	101	21	35	40	1	1.63
181969--182009	2	20.5	2	100	0	82	51	0	0	48	1.00
185663--185805	64	2.2	64	85	8	184	34	17	21	26	1.96
185681--185805	64	1.9	65	88	6	191	35	17	20	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187214--187529	151	2.1	149	90	2	492	26	16	22	35	1.95
200405--200510	55	1.9	55	96	0	194	34	8	12	44	1.72
200836--200881	2	23.5	2	95	4	85	50	0	0	50	1.00
200864--201234	77	4.8	76	84	10	472	46	3	4	45	1.39
200866--201275	38	10.9	36	82	12	398	45	2	4	46	1.38
202562--202591	13	2.2	14	94	5	53	13	6	0	80	0.91
202602--202642	16	2.5	17	74	22	50	26	0	4	68	1.10
202706--202733	14	2.0	14	100	0	56	28	14	14	42	1.84
204211--204310	32	3.1	32	75	2	85	55	25	6	14	1.62
205380--205427	22	2.2	22	92	0	78	52	27	12	8	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17