genome.fa.s8302.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008302.1 Hibiscus syriacus cultivar Beakdansim tig00110988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3402722

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  4  of  17  ( 1926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585295--585349	22	2.5	22	93	0	101	34	10	14	40	1.81
586017--586396	76	5.0	76	96	1	654	21	21	21	36	1.96
586017--586396	151	2.5	152	94	1	663	21	21	21	36	1.96
586342--586425	31	2.8	31	92	3	136	21	19	22	36	1.95
586266--586500	107	2.2	106	93	2	402	20	20	22	36	1.95
586373--586914	76	7.2	76	97	1	1002	21	21	21	36	1.95
586115--586652	258	2.1	258	96	1	983	21	20	21	36	1.95
586190--586576	182	2.1	183	95	1	690	20	20	21	36	1.95
586039--586728	334	2.1	334	96	1	1287	21	20	21	36	1.95
587040--587107	3	22.3	3	82	8	84	36	1	0	61	1.05
593241--593309	31	2.3	31	79	2	77	46	20	7	26	1.76
593698--593750	27	2.0	25	82	7	61	39	1	1	56	1.21
595319--595395	38	2.0	38	92	0	127	31	24	15	28	1.96
600646--600759	42	2.7	41	85	4	147	30	20	21	27	1.98
600480--601175	214	3.2	215	91	1	1103	32	19	14	33	1.92
601171--601576	37	11.1	37	75	9	341	21	19	23	34	1.97
601119--601470	116	3.1	112	81	7	360	24	19	24	32	1.98
601294--601576	36	7.9	35	82	6	329	21	20	22	35	1.96
606501--606625	42	3.0	42	88	4	182	14	19	18	48	1.82
606501--606613	21	5.4	21	90	2	165	13	19	19	47	1.82
616861--616888	13	2.2	13	100	0	56	14	7	25	53	1.66
618538--618582	6	7.5	6	97	0	63	17	0	55	26	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619096--619129	15	2.2	16	94	5	61	11	20	14	52	1.73
639948--639995	20	2.3	21	82	3	62	43	16	16	22	1.87
644227--644291	22	2.8	24	82	15	91	32	0	1	66	1.01
644228--644291	24	2.8	23	81	13	87	31	0	1	67	1.00
644215--644291	22	3.5	21	80	16	68	31	0	2	66	1.05
644843--644876	17	2.0	17	94	0	59	20	11	20	47	1.81
644914--644958	17	2.7	17	86	3	56	31	4	6	57	1.44
650073--650195	41	3.0	42	84	7	187	39	20	13	26	1.90
656579--656646	31	2.2	31	87	10	95	32	13	30	23	1.93
661109--661182	3	24.7	3	88	0	112	62	0	4	33	1.14
661432--661859	113	3.8	113	98	0	802	27	19	13	39	1.89
662151--662208	28	2.1	28	100	0	116	24	17	25	32	1.96
662283--662337	22	2.5	22	87	0	83	36	14	14	34	1.87
663849--663926	35	2.3	34	78	12	79	32	20	12	34	1.90
664886--665226	114	3.0	114	92	0	556	31	19	15	33	1.93
670416--670467	14	3.7	13	84	7	50	50	9	15	25	1.74
674112--674185	3	24.7	3	88	0	112	62	0	4	33	1.14
675692--675737	13	3.6	13	74	14	51	43	0	0	56	0.99
675685--675737	24	2.2	26	83	16	69	39	0	1	58	1.09
680085--680129	22	2.0	22	87	8	65	71	0	2	26	0.98
689260--689303	21	2.1	21	100	0	88	34	9	27	29	1.87
689698--689744	22	2.1	23	84	4	60	40	23	12	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699344--699388	23	2.0	23	90	0	72	17	26	26	28	1.98
703308--703360	21	2.5	20	75	16	54	45	9	1	43	1.47
704140--704172	16	2.0	17	88	5	50	33	15	33	18	1.92
704765--704859	46	2.1	46	93	0	163	25	11	16	46	1.81
706114--706302	94	2.0	94	100	0	378	31	16	15	35	1.91
709419--709452	17	1.9	17	88	5	50	11	0	8	79	0.94
712125--712175	24	2.1	24	89	7	77	21	23	7	47	1.77
712348--712387	20	2.0	21	85	9	57	37	0	5	57	1.21
714215--714253	19	2.1	19	95	0	69	20	38	15	25	1.92
714152--714360	65	3.2	64	83	8	212	29	26	17	26	1.97
714201--714363	65	2.5	65	85	3	222	30	26	15	26	1.96
720391--720737	171	2.0	173	98	1	671	31	13	11	43	1.79
721863--721900	19	2.1	18	90	5	58	18	39	15	26	1.91
721849--722007	64	2.5	63	84	5	196	29	27	16	27	1.97
722981--723117	63	2.2	63	83	5	154	31	16	24	28	1.96
723106--723160	18	2.7	20	81	18	69	29	20	23	27	1.99
723906--723955	18	2.8	18	84	3	75	18	20	30	32	1.96
727042--727195	20	7.7	20	84	5	195	34	28	18	18	1.95
727570--727640	33	2.2	33	92	5	117	11	22	16	49	1.78
727720--727794	20	3.7	20	81	10	98	46	17	22	13	1.82
727814--727937	19	7.1	19	70	22	92	12	23	19	45	1.84
727819--727907	33	2.8	32	94	3	153	11	21	21	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729599--729821	92	2.4	93	96	1	412	21	14	18	44	1.85
729915--730038	33	3.7	33	90	1	167	45	26	17	9	1.79
729980--730038	19	3.4	19	77	22	83	47	30	15	6	1.71
730034--730205	19	9.6	19	76	12	148	11	20	23	45	1.83
730056--730112	14	3.7	14	75	20	51	10	22	22	43	1.84
730039--730131	33	2.8	33	93	0	159	11	21	20	46	1.82
732133--732391	19	15.4	18	71	25	187	14	22	17	46	1.83
732099--732253	51	3.2	48	83	13	189	14	23	18	43	1.87
732201--732286	32	2.9	30	84	15	117	13	20	17	47	1.82
732224--732398	33	5.1	33	70	20	144	13	22	17	46	1.83
732186--732391	53	4.1	51	90	6	275	14	21	17	46	1.84
734654--734678	12	2.1	12	100	0	50	0	28	0	72	0.86
735591--735741	20	7.6	20	82	7	148	21	17	25	36	1.94
735591--735761	60	2.8	60	81	5	168	19	16	25	37	1.93
735728--735799	20	3.6	20	92	3	110	11	18	27	43	1.83
735591--735799	40	5.2	40	83	3	188	18	17	25	38	1.92
735591--735799	60	3.5	60	78	6	156	18	17	25	38	1.92
735767--735865	42	2.4	43	76	8	98	22	19	22	36	1.95
739506--739724	121	1.8	119	85	3	298	46	7	8	37	1.63
739704--739758	19	2.9	19	73	23	53	67	1	5	25	1.22
741113--741158	3	15.7	3	79	20	53	65	2	0	32	1.05
741874--742006	54	2.6	54	80	5	150	28	23	15	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741979--742057	39	2.0	40	97	2	151	30	21	15	32	1.94
742021--742124	54	1.9	54	90	0	163	25	22	15	36	1.93
744270--744495	114	2.0	114	90	0	353	30	19	15	33	1.94
746613--746737	7	16.7	7	74	22	87	3	17	1	77	0.98
746636--746715	13	6.1	13	76	18	60	2	17	0	80	0.83
750362--750400	15	2.7	15	88	4	53	51	12	15	20	1.76
750354--750409	14	3.9	14	79	4	58	55	8	12	23	1.65
751993--752057	20	3.3	19	80	18	62	70	1	0	27	0.96
751999--752059	18	3.3	18	80	17	63	68	1	0	29	0.99
754207--754255	3	16.7	3	87	12	75	67	0	0	32	0.91
758205--758232	13	2.2	13	100	0	56	60	25	0	14	1.34
760737--760777	7	5.9	7	100	0	82	29	26	29	14	1.95
761723--761973	38	6.6	37	80	7	236	46	5	5	42	1.50
761693--761973	38	7.4	37	77	10	212	45	5	6	42	1.53
761697--761973	75	3.7	75	76	9	262	45	5	6	42	1.54
761727--761973	37	6.5	37	72	11	153	46	5	5	42	1.50
762020--762049	15	2.1	14	93	6	51	20	0	0	80	0.72
762369--762398	12	2.5	12	100	0	60	26	13	36	23	1.92
765345--765390	19	2.4	19	96	0	83	10	13	10	65	1.48
768712--768939	81	2.8	81	76	7	226	28	27	22	21	1.99
768803--769077	138	2.0	140	87	4	396	28	26	21	23	1.99
768957--769562	84	7.3	84	79	7	625	29	25	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768930--769611	165	4.1	161	84	6	728	30	24	20	24	1.99
768957--769533	249	2.3	248	85	3	809	29	24	20	24	1.99
770169--770260	38	2.5	36	82	7	103	41	7	8	42	1.64
770196--770444	37	6.6	38	76	10	217	44	4	6	43	1.51
770170--770444	75	3.6	74	73	12	222	44	5	6	43	1.54
770494--770519	12	2.2	12	100	0	52	23	0	0	76	0.78
770845--770874	12	2.5	12	100	0	60	26	13	36	23	1.92
773663--773697	2	17.5	2	100	0	70	51	0	0	48	1.00
773700--773745	22	2.1	22	96	4	85	32	17	4	45	1.68
776398--776457	24	2.4	25	86	2	77	30	23	23	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17