genome.fa.s8302.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008302.1 Hibiscus syriacus cultivar Beakdansim tig00110988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3402722

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  14  of  17  ( 1926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2646715--2646767	26	2.0	26	92	0	88	20	30	7	41	1.80
2646675--2646797	63	1.9	65	85	6	171	23	26	9	40	1.85
2646805--2647063	71	3.6	73	80	13	302	41	11	15	31	1.83
2650382--2650415	2	17.0	2	100	0	68	50	0	0	50	1.00
2652882--2653405	262	2.0	261	96	3	973	29	20	19	30	1.97
2654147--2654445	161	1.9	159	81	8	365	49	6	4	38	1.50
2660036--2660106	32	2.3	30	81	11	83	52	19	9	18	1.73
2660214--2660284	28	2.4	31	86	11	105	59	8	2	29	1.41
2666546--2666600	20	2.6	21	82	11	67	27	30	14	27	1.95
2668562--2668673	46	2.4	46	74	11	113	39	19	15	25	1.91
2674071--2674116	4	11.8	4	77	13	51	26	2	0	71	0.97
2674075--2674117	13	3.2	13	90	6	59	25	2	0	72	0.97
2680837--2680881	23	2.0	23	81	0	54	26	0	6	66	1.16
2681711--2681750	14	2.8	14	88	3	53	27	2	0	70	1.01
2686119--2686153	12	2.9	12	86	0	52	11	2	0	85	0.69
2686957--2687007	18	2.5	21	81	15	63	66	5	15	11	1.41
2691362--2691409	3	15.7	3	87	12	71	66	0	4	29	1.10
2691611--2691672	2	31.5	2	96	3	117	50	0	0	50	1.00
2691455--2691626	71	2.3	77	86	7	234	46	6	2	44	1.43
2691422--2691662	71	3.3	72	79	10	188	48	4	2	43	1.36
2691660--2691745	36	2.4	35	79	11	93	43	9	4	43	1.57
2691540--2691761	120	1.9	116	87	5	329	45	5	2	45	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2692311--2693280	84	11.7	84	79	5	887	25	19	24	30	1.98
2692311--2693240	249	3.7	249	88	1	1238	25	19	24	30	1.98
2692311--2693280	165	5.8	163	78	8	823	25	19	24	30	1.98
2698319--2698396	34	2.3	35	78	10	90	69	3	10	16	1.32
2699668--2699699	13	2.4	14	85	15	50	68	0	3	28	1.04
2699709--2699984	36	7.6	36	84	8	308	45	7	2	43	1.47
2699709--2699982	73	3.8	71	84	7	320	45	7	2	43	1.47
2703134--2703167	17	2.1	17	88	5	52	32	23	5	38	1.79
2714318--2714381	32	2.0	32	96	0	119	20	14	9	56	1.65
2716945--2716998	19	2.8	20	86	5	69	18	29	29	22	1.97
2716990--2717030	14	3.1	14	79	13	59	19	48	21	9	1.77
2717006--2717038	17	1.9	17	100	0	66	18	45	24	12	1.83
2717028--2717064	7	5.4	7	87	6	58	16	27	29	27	1.97
2724097--2724135	17	2.3	17	100	0	78	17	46	23	12	1.83
2728722--2728998	134	2.0	137	95	4	497	30	18	12	38	1.88
2736133--2736372	121	2.0	118	90	9	380	25	30	9	34	1.87
2737027--2737246	110	2.0	107	96	2	404	27	17	19	35	1.94
2737871--2737905	16	2.3	15	90	9	54	48	0	0	51	1.00
2743286--2743356	3	23.7	3	78	5	72	36	1	0	61	1.05
2743282--2743356	15	5.2	15	78	12	86	37	1	0	61	1.05
2744926--2744960	17	2.1	17	88	0	52	42	0	0	57	0.99
2756483--2756531	19	2.8	17	84	9	64	36	8	6	48	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2756826--2757050	115	2.0	114	89	0	342	33	16	20	29	1.95
2757798--2758526	113	6.4	113	85	7	824	37	14	19	28	1.91
2757804--2758408	225	2.7	224	92	3	984	36	14	19	29	1.91
2757798--2758408	113	5.4	113	87	6	857	36	14	19	29	1.91
2758339--2758607	120	2.3	118	86	3	362	39	15	19	24	1.91
2758684--2758715	15	2.1	15	100	0	64	6	18	12	62	1.50
2758778--2758848	3	23.7	3	78	5	72	36	1	0	61	1.05
2758767--2758848	15	5.7	15	77	8	80	35	1	0	63	1.02
2760400--2760434	17	2.1	17	88	0	52	42	0	0	57	0.99
2768074--2768160	31	2.8	31	81	5	104	51	1	2	44	1.21
2769346--2769610	93	2.8	93	87	0	377	29	18	20	31	1.96
2773348--2773383	14	2.6	14	90	0	54	16	8	11	63	1.49
2773348--2773438	24	3.8	24	81	5	112	14	10	16	58	1.63
2773357--2773428	34	2.1	34	84	0	90	15	11	16	56	1.66
2775355--2775463	19	5.7	19	83	2	71	33	17	5	43	1.72
2775376--2775471	19	5.1	19	88	0	138	35	18	3	42	1.66
2777327--2777354	14	2.0	14	100	0	56	7	21	7	64	1.43
2780295--2780365	36	2.0	36	88	0	106	22	18	25	33	1.96
2782434--2782511	23	3.9	19	76	17	77	52	10	20	16	1.72
2782449--2782501	23	2.3	23	100	0	106	52	7	22	16	1.69
2790495--2790596	3	34.0	3	88	7	100	56	0	0	43	0.99
2790497--2790594	27	3.5	28	82	12	121	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2790854--2790912	17	3.4	17	70	25	59	15	23	11	49	1.77
2790813--2791041	124	1.9	121	84	9	315	24	20	15	39	1.91
2790956--2791629	113	5.9	113	91	1	1017	28	18	14	38	1.91
2790957--2791629	228	3.0	226	91	1	1042	28	18	14	38	1.90
2790957--2791629	341	2.0	340	90	0	1051	28	18	14	38	1.90
2792392--2792525	54	2.6	53	82	4	148	28	23	13	34	1.93
2792497--2792576	40	2.0	40	95	0	142	28	21	15	35	1.93
2796920--2796970	17	3.2	16	81	8	59	1	31	0	66	1.03
2796925--2797023	7	13.3	7	72	19	67	2	21	0	76	0.88
2796940--2797012	9	7.6	9	73	19	58	2	17	0	79	0.85
2799797--2799837	6	6.7	6	86	5	55	53	9	14	21	1.70
2799797--2799830	13	2.7	13	90	4	52	55	11	14	17	1.68
2803512--2803553	3	14.0	3	94	0	66	61	0	0	38	0.96
2803517--2803575	21	2.8	22	85	10	70	66	0	1	32	1.02
2805234--2805260	3	9.0	3	100	0	54	33	0	0	66	0.92
2805554--2805604	23	2.2	23	85	0	66	39	7	19	33	1.81
2805522--2805784	87	3.0	87	91	0	409	43	12	12	31	1.79
2805631--2805681	23	2.2	23	82	0	57	39	11	13	35	1.82
2805648--2805691	23	1.9	23	90	0	70	38	9	18	34	1.82
2806025--2806241	114	1.9	113	88	0	326	44	11	11	32	1.77
2806159--2806348	94	2.0	95	92	1	319	42	12	12	32	1.81
2806253--2806579	112	2.9	112	91	0	537	43	11	11	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2812850--2812885	2	18.5	2	94	5	65	50	0	0	50	1.00
2820281--2820316	18	2.0	18	94	0	63	19	33	27	19	1.96
2825316--2825375	20	2.8	21	77	12	68	33	18	25	23	1.97
2826911--2826964	23	2.3	23	93	0	90	16	24	24	35	1.95
2827134--2827172	20	1.9	19	85	10	51	41	0	15	43	1.46
2830233--2830328	43	2.4	39	81	10	104	33	16	25	25	1.96
2830277--2830330	20	2.8	20	97	2	101	29	20	24	25	1.99
2831870--2831926	23	2.5	23	85	0	78	21	24	24	29	1.99
2834519--2834623	23	4.7	23	85	2	133	31	25	22	20	1.98
2834519--2834643	46	2.8	44	81	4	142	31	24	22	21	1.98
2837300--2837369	20	3.5	20	69	19	56	28	22	15	32	1.95
2840696--2840781	32	2.7	32	88	0	136	30	22	13	33	1.93
2844442--2844627	65	2.9	65	89	0	291	54	16	7	22	1.66
2845272--2845306	18	1.9	18	88	0	52	54	0	31	14	1.40
2847871--2847962	41	2.2	41	100	0	184	61	0	0	38	0.96
2847880--2847953	24	3.4	23	70	25	79	64	0	0	35	0.94
2855714--2855759	20	2.3	19	82	10	65	52	10	17	19	1.74
2859529--2859568	21	1.9	21	89	0	62	10	25	40	25	1.86
2859551--2859611	20	2.9	21	87	7	79	18	26	34	21	1.96
2867358--2867403	21	2.2	21	100	0	92	45	8	32	13	1.73
2867449--2867514	33	2.0	33	87	0	96	31	0	43	24	1.54
2869619--2870336	201	3.6	201	93	0	1186	37	13	16	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2871807--2871850	3	14.7	3	80	0	52	36	4	31	27	1.77
2873154--2873585	230	1.9	229	85	2	598	37	15	15	31	1.89
2876191--2876919	200	3.6	196	80	7	675	39	13	15	31	1.86
2876914--2877076	87	1.9	87	98	0	317	32	15	12	39	1.84
2876998--2877042	23	2.0	23	95	0	81	37	20	8	33	1.83
2879267--2879300	16	2.1	16	94	0	59	32	20	0	47	1.51
2885803--2885874	28	2.6	28	95	2	128	38	29	15	16	1.89
2889732--2889770	20	1.9	21	94	5	71	38	25	17	17	1.92
2890701--2890856	63	2.5	64	82	5	192	27	21	19	31	1.97
2890701--2890877	64	2.8	63	81	4	196	25	21	19	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17