genome.fa.s8302.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008302.1 Hibiscus syriacus cultivar Beakdansim tig00110988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3402722

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  2  of  17  ( 1926 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205380--205433	22	2.5	21	88	5	65	51	24	12	11	1.72
205404--205502	32	3.1	31	80	11	92	45	29	10	15	1.78
214014--214089	6	12.7	6	77	4	73	7	2	42	47	1.46
214074--214120	19	2.6	18	83	6	51	21	2	36	40	1.65
215165--215253	18	4.9	18	93	2	151	29	32	20	17	1.96
215165--215253	37	2.4	36	92	1	151	29	32	20	17	1.96
215919--215976	20	2.7	20	86	10	71	24	22	24	29	1.99
218747--218811	18	3.7	18	89	2	105	30	32	20	16	1.95
219523--219560	20	1.9	20	94	0	67	21	23	23	31	1.98
219633--219684	19	2.7	19	93	0	86	25	30	17	26	1.97
222629--222664	16	2.2	17	90	5	56	41	2	5	50	1.40
222927--222959	13	2.5	13	95	5	57	39	3	6	51	1.42
222938--222980	18	2.4	18	88	3	61	41	11	4	41	1.62
222995--223032	14	2.6	15	87	4	51	44	10	2	42	1.52
223207--223336	2	67.5	2	73	15	105	46	1	2	50	1.23
223338--223378	21	2.0	21	85	0	55	48	2	2	46	1.28
223199--223459	97	2.6	98	80	11	250	45	2	3	48	1.32
223195--223411	84	2.6	83	79	13	246	44	2	3	49	1.33
223422--223462	18	2.2	18	86	4	55	51	0	2	46	1.14
223422--223474	16	3.2	17	87	10	74	49	1	3	45	1.31
223614--223660	2	24.5	2	80	8	53	46	2	0	51	1.13
224191--224215	13	1.9	13	100	0	50	40	4	8	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224229--224274	19	2.6	18	83	10	58	56	2	6	34	1.37
224250--224327	22	3.1	26	72	24	69	46	3	3	46	1.39
224438--224490	22	2.4	22	84	6	63	45	3	0	50	1.19
224455--224489	7	5.1	7	89	6	54	42	0	0	57	0.99
223340--225793	832	3.0	829	91	7	3843	34	8	5	50	1.57
225024--225048	13	1.9	13	100	0	50	40	4	8	48	1.51
225064--225099	14	2.6	14	91	8	56	50	0	2	47	1.15
225076--225139	26	2.4	27	82	12	87	45	3	4	46	1.39
225030--225163	66	2.0	65	79	16	143	46	4	2	46	1.38
225270--225329	2	31.0	2	80	6	70	46	3	0	50	1.18
225430--225469	20	2.0	21	85	9	57	20	15	2	62	1.43
232453--232491	19	2.1	19	85	9	53	48	7	5	38	1.54
238781--238833	3	18.0	3	96	3	99	66	0	0	33	0.92
239285--240116	218	3.8	217	91	1	1308	31	19	17	31	1.95
240784--240875	22	4.1	22	75	8	78	40	10	13	35	1.79
240833--240882	22	2.3	22	92	0	82	36	12	12	40	1.79
245470--245553	42	2.0	42	83	4	107	19	20	13	47	1.82
245834--245879	21	2.2	21	84	0	56	60	6	13	19	1.54
246451--246522	36	2.0	36	94	0	126	27	11	19	41	1.85
249601--249688	3	29.0	3	79	2	95	61	1	0	37	1.04
249609--249688	30	2.6	30	92	2	124	62	1	0	36	1.03
252771--252805	11	3.4	11	88	11	56	77	0	14	8	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253192--253302	51	2.2	51	84	9	138	46	8	7	37	1.61
255060--255121	19	3.2	20	76	23	69	14	32	17	35	1.90
259144--259184	16	2.5	17	88	8	66	48	12	0	39	1.41
264888--264947	27	2.3	27	83	16	74	60	3	1	35	1.23
269073--269109	12	3.1	12	92	0	56	43	0	8	48	1.32
269073--269108	16	2.2	16	95	0	63	41	0	8	50	1.33
271654--271705	9	6.1	9	76	13	56	32	1	1	63	1.16
271641--271703	16	3.9	16	86	10	76	33	1	1	63	1.13
275453--275480	2	14.0	2	100	0	56	50	0	0	50	1.00
278092--278395	80	3.8	80	88	3	438	32	24	21	22	1.98
278092--278395	158	1.9	158	86	4	434	32	24	21	22	1.98
280495--280530	17	2.1	17	89	0	54	36	11	8	44	1.70
296621--296661	16	2.5	17	80	11	50	41	2	2	53	1.27
300803--300827	2	12.5	2	100	0	50	48	0	0	52	1.00
303512--303536	2	12.5	2	100	0	50	52	0	0	48	1.00
303381--303792	160	2.6	158	78	9	419	43	7	8	41	1.61
303828--303867	14	2.7	15	92	3	64	67	0	2	30	1.04
303925--303982	15	3.9	15	74	17	57	65	0	5	29	1.14
303910--303977	30	2.2	31	84	7	86	64	1	2	30	1.17
305522--305573	28	2.0	25	81	11	59	51	0	5	42	1.25
305642--305688	17	2.8	17	77	3	51	40	0	0	59	0.97
305653--305689	19	2.1	19	85	10	51	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307373--307452	17	4.6	17	79	11	81	21	23	8	46	1.79
307390--307829	123	3.6	120	89	3	579	24	19	16	39	1.91
307614--308151	113	4.7	114	86	4	669	26	20	15	37	1.92
307390--308151	227	3.3	228	82	9	798	25	19	15	38	1.92
308092--308186	33	2.6	35	83	14	122	20	24	10	45	1.82
308135--308186	16	3.2	16	74	15	61	21	26	9	42	1.83
308212--308393	76	2.4	76	88	1	267	34	20	19	25	1.96
309071--309125	22	2.5	22	90	0	92	40	16	10	32	1.83
315974--316012	20	2.0	20	84	0	51	53	7	12	25	1.65
317570--317625	9	6.9	8	76	15	53	67	0	3	28	1.07
317585--317652	25	2.9	22	79	14	73	63	0	4	32	1.14
318111--318161	25	2.0	25	81	14	59	50	0	5	43	1.26
320105--320518	119	3.5	122	84	8	536	24	18	14	41	1.88
320450--320729	100	2.8	101	88	2	427	27	20	12	39	1.89
321118--321174	22	2.6	22	82	0	69	42	12	12	33	1.80
322529--322668	74	1.9	74	85	5	194	36	15	14	33	1.88
322932--322991	28	2.1	28	81	6	68	33	18	21	26	1.96
322935--322991	15	4.0	14	73	11	53	29	19	22	28	1.98
325188--325248	8	7.8	8	75	3	61	1	18	1	78	0.91
325188--325268	8	10.1	8	73	15	60	1	16	2	80	0.89
325196--325267	13	5.5	13	72	21	62	1	15	2	80	0.89
327814--327900	43	2.0	44	84	2	113	34	22	10	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328306--328374	36	1.9	36	87	0	102	28	11	17	42	1.84
329264--329312	2	24.5	2	100	0	98	51	0	0	48	1.00
330027--330061	2	17.5	2	93	0	61	48	0	0	51	1.00
329841--330315	158	2.9	161	79	13	517	44	6	7	41	1.58
330434--330491	15	3.9	15	74	17	57	65	0	5	29	1.14
330419--330486	30	2.2	31	84	7	86	64	1	4	29	1.21
334632--334668	19	2.0	19	89	5	58	62	10	2	24	1.41
341421--341472	21	2.5	21	87	3	70	38	17	23	21	1.93
341482--341544	20	3.0	21	79	4	65	22	20	15	41	1.90
342138--342182	19	2.4	19	92	0	72	48	26	15	8	1.74
342178--342276	19	5.1	19	86	4	135	13	23	19	44	1.85
344279--344397	42	2.8	42	78	12	102	22	35	18	23	1.96
345752--345787	14	2.6	14	95	0	63	30	0	25	44	1.54
345954--345995	19	2.2	19	91	0	66	16	19	23	40	1.91
345963--346115	19	8.8	19	66	20	93	15	22	20	41	1.89
345969--346095	33	3.9	32	87	8	184	14	23	19	42	1.88
345965--346094	66	2.0	66	95	0	233	13	23	20	42	1.88
348381--348415	12	2.9	12	100	0	70	0	25	0	74	0.82
348585--348638	24	2.2	24	90	0	81	40	20	16	22	1.91
349411--349462	21	2.5	21	87	3	70	38	17	23	21	1.93
349727--349795	20	3.5	20	71	9	70	39	24	18	17	1.92
349826--349899	19	4.5	16	83	16	66	13	20	18	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349822--349889	19	3.8	19	87	12	101	13	22	17	47	1.82
349892--349948	20	2.8	20	97	0	105	14	14	29	42	1.84
351946--351994	20	2.5	20	93	0	80	34	26	24	14	1.94
351946--352001	20	2.8	20	88	0	67	37	23	23	16	1.93
351986--352073	14	5.6	14	71	21	59	45	22	19	12	1.84
351995--352057	18	3.7	18	76	20	80	47	19	19	14	1.82
351998--352057	14	3.5	19	72	23	69	48	20	18	13	1.81
351986--352078	32	2.8	33	93	1	152	46	22	19	11	1.82
352085--352181	19	5.7	18	70	23	84	15	19	18	46	1.84
352107--352165	14	3.9	14	76	20	55	15	15	18	50	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17