Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: VEPZ01008302.1 Hibiscus syriacus cultivar Beakdansim tig00110988_pilon, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Length: 3402722

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  5  of  17  ( 1926 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
776462--776529
23
3.0
23
74
8
68
41
25
17
16
1.89
777030--777083
22
2.5
22
100
0
108
20
31
14
33
1.93
778843--778882
21
1.9
21
89
0
62
15
32
30
22
1.94
780458--780512
8
7.0
8
78
15
53
29
12
32
25
1.93
780501--780603
43
2.4
43
81
4
127
27
15
26
31
1.96
790686--790719
14
2.4
15
90
9
54
52
0
0
47
1.00
790662--790713
25
2.1
25
82
7
61
55
0
1
42
1.10
791397--791423
2
13.5
2
100
0
54
48
0
0
51
1.00
792606--793228
136
4.6
136
90
0
953
26
22
17
33
1.96
794090--794137
9
5.4
9
87
9
64
8
16
0
75
1.04
801401--801439
17
2.2
19
86
9
55
33
17
10
38
1.84
802329--802723
199
2.0
196
97
2
738
22
24
11
42
1.86
807741--807835
46
2.0
49
89
8
151
62
14
10
12
1.55
810245--810278
15
2.2
16
94
5
61
58
0
0
41
0.98
810300--810368
21
3.2
21
70
2
57
56
5
2
34
1.38
814201--814232
3
10.7
3
100
0
64
65
0
34
0
0.93
815661--815698
20
1.9
20
84
10
51
65
5
7
21
1.38
819201--819238
3
12.7
3
100
0
76
68
0
31
0
0.90
836389--836437
23
2.1
23
88
0
71
38
6
20
34
1.77
836527--837209
200
3.4
198
87
4
921
31
15
14
37
1.88
839472--839537
19
3.5
19
93
0
114
53
7
6
33
1.54
841164--842351
198
6.0
199
85
3
1509
31
16
13
38
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
842911--843150
128
1.9
127
93
2
419
37
18
16
27
1.92
846356--846388
15
2.2
15
100
0
66
24
6
45
24
1.75
846655--847604
200
4.8
200
90
1
1422
30
15
14
38
1.88
848032--848077
19
2.4
19
96
0
83
56
10
2
30
1.46
850268--850313
18
2.5
18
89
10
67
0
32
23
43
1.54
852135--852180
18
2.5
18
89
10
67
4
32
19
43
1.71
856860--857604
182
4.1
182
90
1
1124
27
15
14
42
1.85
857986--858314
166
2.0
166
92
1
552
27
29
13
28
1.95
861540--861593
16
3.5
16
75
17
60
81
5
1
11
0.93
861528--861590
25
2.4
25
81
7
63
80
6
4
7
1.00
861545--861589
21
2.1
21
84
8
56
82
6
0
11
0.84
866551--866576
8
3.2
8
100
0
52
38
11
0
50
1.39
871915--871956
3
13.7
3
95
5
75
66
0
0
33
0.92
877768--878098
163
2.0
163
100
0
662
40
17
19
22
1.92
879989--880030
19
2.3
19
83
4
50
50
4
4
40
1.45
880185--880297
60
1.9
60
85
7
158
46
7
6
39
1.56
880532--880658
64
2.0
61
90
4
200
40
13
15
30
1.86
881192--881229
20
1.9
20
94
0
67
65
0
28
5
1.14
881192--881239
20
2.4
20
86
6
62
64
2
27
6
1.28
881391--881435
23
1.9
23
86
4
63
17
2
15
64
1.39
882450--882497
19
2.5
19
89
0
69
31
29
18
20
1.97
882462--882498
19
1.9
19
100
0
74
27
32
18
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
884218--884244
14
1.9
14
100
0
54
44
3
7
44
1.49
887568--887672
23
4.7
22
76
10
81
22
20
30
26
1.98
887586--887672
23
3.8
23
80
7
88
25
18
29
26
1.98
894843--894888
20
2.2
22
88
7
69
2
30
0
67
1.03
895424--895486
30
2.2
29
80
8
74
33
12
15
38
1.86
895890--895923
15
2.3
15
89
0
50
67
0
0
32
0.91
896078--896118
17
2.4
17
100
0
82
29
0
41
29
1.56
903291--903322
16
1.9
17
93
6
57
43
21
0
34
1.53
905891--905920
2
15.0
2
100
0
60
50
0
0
50
1.00
912874--913710
418
2.0
417
96
0
1539
34
16
18
30
1.93
913853--913900
13
3.8
13
83
2
62
64
12
6
16
1.46
916084--916143
9
7.1
8
76
12
50
66
1
0
31
1.01
916750--916796
18
2.7
18
93
3
78
31
6
31
29
1.83
917112--917732
266
2.4
255
85
11
838
40
20
12
26
1.88
919710--919775
24
2.8
24
78
0
69
54
19
9
16
1.68
942795--942844
22
2.3
22
96
0
91
34
14
6
46
1.69
944720--944787
34
2.0
34
91
0
109
25
13
30
30
1.93
945710--945757
22
2.2
22
85
3
62
47
4
6
41
1.48
945755--945785
16
1.9
16
100
0
62
45
3
6
45
1.45
948246--948322
33
2.3
33
97
0
145
35
18
10
36
1.85
948573--948627
28
2.0
28
82
7
67
32
14
12
40
1.84
949551--949592
20
2.1
20
100
0
84
40
4
14
40
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
952769--952793
4
6.2
4
100
0
50
52
0
48
0
1.00
954383--954534
32
4.9
31
87
7
184
26
15
22
34
1.94
954857--954884
2
14.0
2
100
0
56
50
0
0
50
1.00
965896--965933
11
3.4
11
89
7
58
71
10
13
5
1.30
967488--967770
155
1.8
155
86
3
410
31
16
11
40
1.84
967819--967903
36
2.4
36
82
7
102
30
22
11
35
1.90
967837--967937
36
2.9
36
76
13
97
32
21
11
33
1.90
968182--968306
28
4.5
27
80
12
139
30
10
17
41
1.83
968182--968306
56
2.2
55
82
9
155
30
10
17
41
1.83
968348--968639
28
9.7
28
68
23
111
31
10
15
43
1.80
968258--968520
97
2.8
88
82
11
262
30
10
15
42
1.81
968348--968592
125
2.0
126
84
8
331
30
10
15
43
1.80
968475--968700
91
2.4
94
84
9
272
32
10
14
42
1.80
968250--968686
217
2.0
218
98
1
851
30
10
14
43
1.80
968590--968820
66
3.5
67
95
3
409
31
12
11
45
1.76
968590--968862
131
2.1
130
87
6
392
30
12
11
45
1.78
968590--968881
66
4.5
64
90
4
288
30
11
11
45
1.77
969443--969523
28
2.9
28
83
8
96
24
14
13
46
1.81
969428--969503
28
2.6
28
82
14
93
26
15
11
46
1.81
969552--969741
40
4.6
40
73
13
159
24
31
18
25
1.98
969542--969701
82
1.9
82
87
7
230
25
31
19
23
1.98
969568--969902
130
2.6
129
88
4
428
25
31
17
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
969760--969918
83
1.9
85
82
5
205
24
30
18
27
1.98
970070--970136
3
23.0
3
79
11
68
28
4
1
65
1.21
971367--971393
13
2.1
13
100
0
54
14
7
14
62
1.51
975045--975095
25
2.0
25
100
0
102
39
11
15
33
1.84
976973--977027
25
2.2
26
93
6
96
38
23
14
23
1.92
979165--979391
54
4.3
54
79
7
241
23
25
23
27
2.00
980948--980985
20
1.9
20
88
0
58
15
15
10
57
1.64
989176--989205
2
15.0
2
100
0
60
50
0
0
50
1.00
1002526--1002693
91
1.8
91
96
0
309
40
7
8
44
1.62
1002643--1002695
26
2.1
24
82
6
61
45
1
1
50
1.23
1023361--1023407
18
2.6
17
86
6
58
51
0
2
46
1.13
1023407--1023539
32
4.3
30
73
14
110
30
2
9
58
1.41
1023418--1023536
32
3.8
31
77
15
111
30
2
5
61
1.33
1023424--1023570
29
4.7
31
75
15
110
29
3
9
57
1.46
1028165--1028223
29
2.0
29
90
0
91
44
15
16
23
1.86
1028887--1028917
16
1.9
16
93
0
53
22
3
29
45
1.68
1034783--1034836
2
27.0
2
92
0
90
46
3
0
50
1.19
1036977--1037035
29
2.0
29
90
0
91
44
15
16
23
1.86
1037700--1037730
16
1.9
16
93
0
53
22
3
29
45
1.68
1043373--1043415
2
21.5
2
95
0
77
46
2
0
51
1.13
1045412--1045470
29
2.0
29
90
0
91
44
15
16
23
1.86
1051065--1051103
17
2.3
18
86
8
55
61
7
5
25
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1051845--1052197
180
2.0
181
94
5
630
56
8
7
27
1.56
1052160--1052201
5
8.4
5
84
10
59
78
2
0
19
0.86
1061366--1061682
156
2.0
157
98
0
609
33
18
15
33
1.92
1066247--1066280
18
2.0
18
88
11
54
52
14
11
20
1.73
1077468--1077536
31
2.2
31
92
0
111
53
13
10
23
1.69
1077863--1077893
16
1.9
16
100
0
62
38
3
12
45
1.59
1084532--1084567
2
18.0
2
100
0
72
50
0
0
50
1.00
1094162--1094212
12
4.2
12
81
16
61
31
0
5
62
1.19
1094141--1094224
25
3.4
25
88
3
107
29
2
7
60
1.36
1094158--1094233
25
3.1
25
88
5
102
32
1
3
61
1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17