genome.fa.s8356.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12862612

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   

This is table  51  of  56  ( 6656 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11598764--11598879	54	2.1	54	92	3	189	22	20	17	39	1.92
11600734--11601164	83	5.2	83	91	1	713	35	19	14	30	1.92
11603397--11603430	17	2.1	16	94	5	59	0	20	0	79	0.73
11607980--11608022	9	4.9	9	81	13	54	67	0	2	30	1.03
11607979--11608040	27	2.3	28	74	23	69	70	0	3	25	1.02
11610112--11610195	3	27.7	3	85	2	114	60	1	0	38	1.04
11612747--11612780	10	3.2	10	91	8	50	29	26	29	14	1.95
11612811--11612994	29	6.4	29	83	6	205	39	22	5	31	1.78
11613002--11613083	5	15.2	5	72	14	56	8	20	50	20	1.74
11612996--11613083	22	4.0	22	90	0	149	10	21	47	20	1.79
11615940--11615982	22	2.0	21	86	8	61	74	2	0	23	0.93
11616394--11616456	24	2.6	24	94	0	108	26	23	15	33	1.95
11620468--11620520	24	2.2	24	100	0	106	35	13	16	33	1.88
11620575--11620780	108	1.9	108	95	0	376	31	18	17	32	1.95
11624100--11624146	18	2.6	18	100	0	94	12	27	27	31	1.93
11624244--11624295	20	2.6	20	93	0	86	25	15	21	38	1.92
11625629--11625664	2	18.0	2	100	0	72	50	50	0	0	1.00
11625918--11626085	1	168.0	1	76	0	156	88	0	10	1	0.58
11625919--11626085	6	25.6	7	89	8	189	88	0	10	1	0.58
11625920--11626085	28	6.4	26	85	11	200	87	0	10	1	0.59
11627529--11627650	40	3.2	40	66	23	98	31	16	12	40	1.85
11627475--11628314	39	21.9	36	77	8	247	31	17	14	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11627488--11627770	76	3.7	75	80	8	290	31	16	12	39	1.85
11627738--11628302	39	14.6	39	86	3	766	30	17	15	36	1.91
11627664--11628302	39	16.6	38	84	2	399	31	17	15	36	1.90
11628433--11628517	42	2.0	42	86	4	118	27	22	18	31	1.97
11628570--11628819	93	2.7	92	82	5	299	30	24	16	27	1.97
11635019--11635191	47	3.8	45	90	3	240	31	21	7	38	1.82
11638103--11638203	31	3.2	31	88	1	148	33	29	7	28	1.86
11640175--11640251	31	2.5	30	80	2	82	37	11	23	27	1.89
11641297--11641336	20	2.0	20	85	9	55	60	35	0	5	1.19
11644203--11644232	14	2.1	14	93	0	51	56	0	0	43	0.99
11649627--11649702	36	2.1	36	97	0	143	47	1	0	51	1.09
11650172--11650233	27	2.3	26	94	2	106	38	20	6	33	1.79
11652746--11652781	18	2.0	18	94	0	63	25	11	13	50	1.75
11655918--11655992	18	4.2	18	77	5	73	62	5	18	13	1.49
11656529--11656566	20	1.9	19	89	5	58	21	26	18	34	1.96
11657142--11657264	43	2.9	43	77	2	113	23	25	20	30	1.98
11659516--11659563	21	2.3	20	78	3	51	27	10	25	37	1.88
11660081--11660119	21	1.9	20	84	5	51	10	7	15	66	1.43
11662675--11662740	25	2.8	24	74	4	62	51	10	6	31	1.61
11662807--11663017	82	2.5	82	82	2	242	35	24	21	19	1.96
11664483--11664653	82	2.1	82	83	3	209	22	21	23	33	1.97
11664492--11664690	82	2.4	83	78	3	186	22	22	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11686563--11686611	3	16.3	3	95	0	89	63	0	2	34	1.06
11687519--11687562	21	2.1	21	91	0	70	18	15	0	65	1.27
11698342--11698387	20	2.3	20	88	3	67	36	0	21	41	1.54
11704033--11704124	45	2.0	45	97	0	175	41	6	7	44	1.59
11707324--11707377	19	2.9	19	97	2	101	64	0	0	35	0.94
11707331--11707386	19	2.6	22	78	18	73	69	0	0	30	0.89
11715341--11715375	18	1.9	18	100	0	70	60	17	5	17	1.55
11715867--11715913	22	2.1	22	84	4	58	38	25	8	27	1.85
11722903--11723496	297	2.0	298	97	0	1127	39	15	24	21	1.91
11726672--11726742	34	2.1	34	81	2	81	42	0	2	54	1.14
11726685--11726740	27	2.1	28	83	6	71	41	0	3	55	1.17
11726809--11726841	15	2.2	15	94	0	57	48	0	0	51	1.00
11726987--11727375	202	1.9	202	91	1	636	38	13	21	26	1.90
11728609--11728816	65	3.2	66	76	12	207	27	17	22	31	1.97
11731479--11731560	23	3.6	22	78	8	94	24	24	26	24	2.00
11731483--11731580	44	2.2	44	84	10	121	25	22	25	26	2.00
11735453--11735674	117	1.9	118	80	4	261	27	14	9	47	1.76
11736976--11737155	65	2.8	64	84	11	226	28	17	23	30	1.97
11737590--11737946	184	1.9	184	90	0	561	40	22	12	24	1.88
11739994--11740050	30	1.9	30	82	7	71	28	22	7	42	1.80
11741660--11741721	29	2.1	29	90	0	97	30	8	14	46	1.73
11744475--11744750	49	5.6	49	88	0	383	27	21	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11750875--11750920	24	1.9	24	86	0	65	52	23	0	23	1.48
11762031--11762063	2	16.5	2	100	0	66	51	0	0	48	1.00
11762745--11762817	21	3.5	20	78	10	76	28	15	27	28	1.96
11762745--11762817	19	3.5	22	82	10	75	28	15	27	28	1.96
11762672--11762912	96	2.5	92	83	9	265	29	14	26	29	1.95
11762841--11762915	19	3.7	19	73	16	53	28	12	30	29	1.92
11762861--11762912	22	2.5	22	90	6	81	28	15	26	28	1.96
11763423--11763663	45	5.4	45	85	3	297	41	9	19	28	1.84
11769674--11769745	22	3.5	20	90	9	119	30	15	27	26	1.96
11770121--11770398	45	6.2	45	86	1	335	40	9	21	28	1.85
11770048--11770196	79	1.9	79	82	0	190	36	10	24	28	1.88
11772659--11772930	34	7.9	34	79	11	241	28	24	10	36	1.88
11772660--11772785	31	4.0	31	88	3	189	30	26	7	35	1.83
11772660--11772854	65	3.0	66	82	7	236	29	23	8	37	1.85
11772660--11772854	96	2.0	94	84	4	246	29	23	8	37	1.85
11772800--11773008	79	2.6	79	91	0	328	29	24	11	33	1.91
11772868--11773090	113	2.0	113	100	0	446	30	25	11	33	1.91
11772948--11773043	34	2.8	34	91	0	156	29	26	10	34	1.89
11773026--11773131	45	2.4	45	90	0	158	33	25	13	28	1.93
11776498--11776537	22	1.9	22	90	10	66	22	30	2	45	1.66
11780616--11780653	20	1.9	20	94	0	67	26	28	21	23	1.99
11786475--11786543	14	4.9	14	80	8	79	76	4	15	2	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11786477--11786568	26	3.4	28	78	16	88	76	4	16	3	1.08
11786474--11786544	29	2.5	28	79	9	72	77	4	15	2	1.04
11786520--11786562	21	2.1	21	87	12	63	74	4	18	2	1.10
11786536--11786581	17	2.7	17	83	12	67	73	2	19	4	1.10
11786474--11786568	27	3.5	26	77	19	90	75	4	16	3	1.09
11786511--11786576	26	2.5	26	77	20	66	75	3	18	3	1.06
11790635--11790748	46	2.4	46	82	7	131	42	8	18	30	1.81
11801104--11801185	41	2.0	41	85	4	112	35	15	15	32	1.90
11803146--11803266	61	1.9	64	83	6	158	31	27	14	27	1.94
11808930--11808981	19	2.7	19	72	16	54	42	7	1	48	1.43
11825346--11825799	226	2.0	226	98	0	872	35	11	11	42	1.77
11825900--11825976	18	3.7	21	72	14	61	29	19	18	32	1.95
11827853--11828007	45	3.4	45	90	0	238	28	23	10	36	1.89
11828157--11828640	68	6.7	68	72	11	392	29	22	14	32	1.94
11828060--11828573	149	3.4	149	88	0	724	30	22	13	33	1.93
11828862--11829075	55	3.9	53	81	6	223	33	18	12	35	1.88
11833373--11833617	45	5.4	45	89	0	364	27	23	12	37	1.90
11833913--11834247	68	4.7	68	78	10	357	29	24	13	32	1.93
11833666--11834161	149	3.3	149	89	3	755	29	23	12	34	1.92
11839015--11839048	15	2.1	17	89	10	54	17	5	0	76	0.98
11841941--11842021	24	3.4	24	73	17	62	74	7	14	3	1.18
11842626--11842677	22	2.4	22	96	0	95	38	28	9	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11843533--11843604	37	1.9	37	91	0	117	23	22	13	40	1.90
11843620--11843706	37	2.4	37	86	1	113	25	22	12	39	1.90
11843722--11843809	37	2.4	38	84	3	108	25	21	13	39	1.90
11843533--11844116	103	5.7	103	95	0	1014	29	20	12	37	1.89
11843825--11843912	37	2.4	38	86	3	117	25	22	13	38	1.91
11843928--11844015	37	2.4	38	84	3	108	25	21	14	38	1.92
11844031--11844258	36	6.4	36	76	14	186	24	17	14	44	1.85
11846451--11846483	14	2.2	16	89	10	52	18	6	0	75	1.00
11851595--11851640	18	2.5	18	82	3	56	36	41	6	15	1.73
11851632--11851780	33	4.5	33	74	9	133	44	32	8	14	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56