genome.fa.s8356.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008356.1 Hibiscus syriacus cultivar Beakdansim tig00111095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12862612

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   

This is table  56  of  56  ( 6656 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12784104--12784642	229	2.4	229	94	0	936	33	15	19	31	1.93
12786615--12786694	40	2.0	40	97	0	151	33	15	21	30	1.94
12786655--12786795	54	2.7	52	79	4	151	34	15	21	27	1.94
12787590--12788271	114	6.0	113	92	1	1042	38	14	18	28	1.90
12788315--12788373	17	3.4	17	70	25	59	49	11	23	15	1.77
12788611--12788691	3	27.0	3	95	5	146	34	0	0	65	0.93
12790291--12790333	20	2.2	20	86	0	59	32	0	2	65	1.06
12790900--12790938	13	3.1	13	92	3	62	51	2	7	38	1.44
12795738--12795777	20	2.0	20	100	0	80	30	25	10	35	1.88
12797312--12797471	64	2.5	65	80	6	166	29	18	22	30	1.97
12804915--12804987	24	3.1	22	76	23	69	73	5	1	19	1.09
12804924--12804979	17	3.2	18	75	14	55	75	5	1	17	1.09
12805019--12805064	22	2.2	20	85	14	58	56	8	13	21	1.63
12811822--12811858	2	18.5	2	100	0	74	51	0	0	48	1.00
12811885--12811925	18	2.2	19	83	12	50	19	9	0	70	1.14
12813080--12813192	53	2.1	54	80	11	135	26	11	12	49	1.74
12813476--12813548	33	2.2	32	95	4	137	43	17	6	31	1.75
12813541--12813582	21	2.0	21	95	0	75	47	7	14	30	1.71
12817984--12818016	15	2.2	15	89	10	50	57	12	3	27	1.49
12820043--12820089	10	4.6	10	91	2	76	34	0	0	65	0.93
12820341--12820398	28	2.0	30	86	6	84	31	1	1	65	1.13
12820337--12820425	28	3.2	27	79	7	81	34	2	2	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12820481--12820553	31	2.3	33	83	7	96	42	4	0	53	1.20
12820729--12820804	29	2.6	29	83	8	100	68	3	1	26	1.15
12821673--12822097	42	10.1	41	89	4	541	20	19	24	36	1.95
12821673--12822097	126	3.4	123	90	3	609	20	19	24	36	1.95
12822068--12822125	28	2.1	28	96	0	107	18	22	20	37	1.94
12822026--12822167	70	2.0	70	94	0	248	19	21	23	36	1.95
12822111--12822176	21	3.3	19	78	15	78	22	22	21	33	1.97
12822096--12822176	42	1.9	42	97	0	153	20	22	22	34	1.97
12822936--12822967	6	5.5	6	92	7	57	0	15	50	34	1.45
12823064--12823134	21	3.4	20	75	14	72	38	25	18	18	1.93
12823103--12823160	30	2.0	28	83	6	71	39	20	17	22	1.92
12823156--12823208	21	2.5	21	93	0	88	16	20	32	30	1.95
12826891--12826989	41	2.4	41	81	3	101	28	15	21	35	1.93
12827308--12827366	21	2.8	21	92	0	91	50	20	6	22	1.71
12829983--12830079	41	2.4	41	89	0	149	36	16	16	30	1.91
12830642--12830674	17	1.9	17	93	0	57	24	21	12	42	1.86
12830751--12830840	21	4.1	22	75	16	89	28	28	20	22	1.98
12841894--12841972	20	3.9	20	74	9	61	27	32	24	15	1.95
12847280--12847321	21	2.0	21	95	0	75	23	21	28	26	1.99
12849448--12849574	42	3.0	44	80	7	138	30	26	19	22	1.98
12849454--12849541	21	4.1	21	74	17	74	29	27	19	23	1.98
12849506--12849575	21	3.3	21	91	0	104	34	28	15	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12849789--12849813	13	1.9	13	100	0	50	32	28	0	40	1.57
12850402--12850479	19	3.9	20	76	15	72	28	29	11	30	1.92
12851235--12851375	40	3.5	40	80	4	140	39	14	16	29	1.88
12851787--12851864	31	2.5	31	85	0	111	39	8	11	39	1.73
12852467--12852522	15	3.6	15	79	9	67	42	12	12	32	1.80
12852470--12852520	17	3.1	17	77	11	61	43	11	9	35	1.75
12852913--12852942	13	2.3	13	94	0	51	46	10	3	40	1.54
12852953--12853051	33	3.0	33	94	1	164	45	15	7	32	1.73
12853046--12853085	21	1.9	21	94	0	71	47	7	15	30	1.72
12858727--12858793	31	2.2	31	86	0	89	34	8	20	35	1.84
12860280--12860305	2	13.0	2	100	0	52	50	0	0	50	1.00
12861044--12861110	31	2.2	31	86	0	89	35	20	8	34	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56

The End!