genome.fa.s8463.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008463.1 Hibiscus syriacus cultivar Beakdansim tig00111276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1833679

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1573193--1573244	3	17.3	3	87	0	59	1	38	0	59	1.08
1574919--1574961	21	2.0	22	82	13	54	48	2	6	41	1.43
1578996--1579039	14	3.1	14	80	0	61	38	15	25	20	1.92
1581223--1581266	18	2.4	18	85	7	54	40	18	20	20	1.91
1584144--1584331	60	3.1	59	79	7	209	34	21	3	40	1.71
1590383--1590410	2	14.0	2	100	0	56	50	0	0	50	1.00
1595829--1596006	94	1.9	94	95	0	320	21	20	15	42	1.88
1599924--1600258	43	7.9	43	89	1	505	34	23	25	17	1.96
1599924--1600258	85	3.9	86	90	1	505	34	23	25	17	1.96
1599924--1600258	128	2.6	128	94	0	573	34	23	25	17	1.96
1600255--1600362	43	2.5	43	96	0	198	30	23	30	15	1.95
1600150--1600342	105	1.8	105	97	0	368	32	22	27	17	1.96
1601707--1601764	26	2.2	26	93	0	98	31	24	15	29	1.95
1603200--1603257	18	3.2	18	97	0	107	18	15	48	17	1.82
1603187--1603257	36	2.0	36	88	0	106	19	15	46	18	1.84
1603573--1603620	20	2.4	20	86	6	62	39	2	4	54	1.32
1603634--1603689	29	2.0	28	86	10	78	50	0	5	44	1.25
1603591--1603685	21	4.5	21	74	11	88	44	0	6	49	1.27
1605085--1605114	15	1.9	16	93	6	53	63	0	0	36	0.95
1606921--1607005	42	2.0	42	100	0	170	28	4	7	60	1.43
1608214--1608262	3	16.7	3	91	4	82	0	28	0	71	0.86
1611958--1614842	628	4.7	623	83	6	3129	29	16	15	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1614796--1614890	48	2.0	48	100	0	190	23	10	6	60	1.52
1614206--1615488	639	2.0	637	88	3	1903	28	15	14	40	1.87
1617158--1617198	21	1.9	22	90	5	66	39	19	17	24	1.92
1618361--1618408	20	2.4	20	82	6	53	47	4	14	33	1.63
1629328--1629380	26	2.0	26	100	0	106	22	18	28	30	1.98
1634949--1634998	23	2.2	23	100	0	100	22	10	24	44	1.83
1635959--1636018	28	2.1	29	96	3	113	61	5	16	16	1.51
1638123--1638184	32	1.9	32	93	0	106	29	8	22	40	1.82
1655629--1655668	19	2.0	20	90	4	64	45	0	45	10	1.37
1661207--1661273	15	4.5	15	80	0	80	14	22	16	46	1.84
1661207--1661273	30	2.2	30	89	0	98	14	22	16	46	1.84
1665472--1665510	2	19.5	2	100	0	78	51	0	0	48	1.00
1669300--1669360	16	3.9	15	77	14	52	47	32	11	8	1.69
1669461--1669490	3	9.7	3	92	7	51	30	3	0	66	1.07
1669911--1669950	2	20.0	2	100	0	80	50	0	0	50	1.00
1670374--1670423	23	2.1	23	82	10	57	32	36	12	20	1.89
1672783--1672844	28	2.2	28	88	8	92	77	1	6	14	1.04
1672800--1672883	23	3.6	22	77	13	73	76	4	4	14	1.12
1683347--1683399	22	2.4	22	93	6	90	49	13	9	28	1.73
1691665--1691754	3	30.7	3	83	10	89	37	0	0	62	0.96
1691667--1691721	11	5.4	10	87	12	69	30	0	0	69	0.89
1691670--1691716	14	3.5	14	88	11	64	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1693584--1693618	15	2.4	14	90	4	52	51	0	2	45	1.16
1697491--1697537	15	3.1	15	93	0	85	27	19	6	46	1.74
1704873--1704921	19	2.7	19	78	15	50	77	0	18	4	0.92
1704873--1704935	16	4.2	16	76	9	53	76	0	17	6	0.99
1705277--1705314	18	2.1	18	90	0	58	36	10	5	47	1.61
1705779--1705954	61	2.9	61	92	1	282	38	13	21	26	1.91
1706319--1706416	22	4.5	22	93	2	135	34	16	12	36	1.86
1706319--1706416	44	2.2	44	90	3	153	34	16	12	36	1.86
1706796--1707608	123	6.7	123	88	3	1076	41	13	18	27	1.87
1707183--1707246	20	3.2	20	65	20	53	42	7	21	28	1.81
1707743--1707802	3	20.0	3	100	0	120	33	0	0	66	0.92
1709875--1709922	18	2.8	17	78	6	51	35	8	0	56	1.30
1711810--1712112	148	2.0	148	100	0	606	36	7	11	44	1.69
1714603--1714655	7	7.6	7	84	0	70	39	0	58	1	1.09
1724301--1724339	14	2.8	13	85	11	51	41	25	7	25	1.82
1725593--1725631	20	2.0	20	84	0	51	35	20	2	41	1.66
1735180--1735231	14	3.7	14	86	0	77	55	19	13	11	1.68
1747669--1747702	15	2.3	15	89	0	50	35	32	17	14	1.91
1747774--1747852	29	2.8	29	92	7	128	17	21	16	44	1.87
1748233--1748395	64	2.6	63	76	9	170	26	18	19	35	1.95
1748361--1748408	19	2.5	19	100	0	96	20	29	22	27	1.99
1754376--1754409	15	2.3	15	94	0	59	32	32	20	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1754494--1754661	29	5.8	29	98	1	320	17	21	16	44	1.86
1755042--1755198	64	2.5	63	76	10	158	26	18	19	35	1.95
1760301--1760340	20	2.0	20	100	0	80	55	15	10	20	1.68
1761641--1761760	42	2.9	41	87	2	170	46	20	10	21	1.81
1768345--1768406	26	2.6	23	79	20	65	8	6	19	66	1.40
1768349--1768409	24	2.4	26	86	10	83	8	6	18	67	1.38
1768932--1768964	3	11.7	3	87	12	52	66	0	0	33	0.92
1769138--1769243	43	2.5	42	76	14	112	25	19	30	24	1.98
1769693--1769831	65	2.2	63	87	7	192	44	10	10	33	1.74
1770010--1770209	29	6.4	31	71	15	92	41	13	17	28	1.86
1770101--1770206	29	3.6	29	82	6	97	45	13	17	23	1.84
1770124--1770404	29	9.4	29	70	14	135	43	12	13	30	1.82
1770246--1770353	27	3.8	29	79	9	107	45	14	10	29	1.78
1770382--1770590	64	3.2	65	84	5	269	43	13	11	31	1.79
1770493--1770544	27	1.9	27	88	0	77	42	21	5	30	1.76
1770504--1770684	100	1.8	101	85	6	260	42	12	13	31	1.81
1770656--1770714	31	1.9	31	93	3	102	42	15	13	28	1.85
1770752--1770860	35	3.1	35	88	4	157	37	11	18	33	1.86
1771026--1771122	36	2.7	36	81	7	117	41	12	18	27	1.86
1771064--1771139	37	2.1	36	82	7	91	43	14	13	28	1.83
1771419--1771477	26	2.3	26	78	0	64	28	10	20	40	1.85
1771482--1771552	4	17.8	4	80	0	61	30	39	22	7	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1771470--1771554	40	2.1	40	86	0	116	29	34	23	12	1.92
1771456--1771554	8	12.4	8	78	0	54	29	32	23	15	1.95
1771550--1771699	8	18.8	8	96	0	246	24	8	25	41	1.83
1772914--1772970	21	2.8	20	75	17	55	3	17	7	71	1.22
1772944--1772978	18	1.9	19	88	11	56	0	20	8	71	1.11
1772925--1772986	31	2.0	32	90	3	99	1	20	8	69	1.23
1772949--1772996	25	1.9	25	86	0	69	2	16	12	68	1.29
1774265--1774307	13	3.2	13	78	18	52	51	11	20	16	1.75
1775848--1776032	41	4.6	40	79	8	182	31	15	19	32	1.93
1775848--1776128	41	6.9	41	76	8	179	30	17	17	34	1.93
1777854--1778011	82	1.9	84	83	3	205	27	10	24	37	1.88
1779953--1780078	43	3.0	43	84	4	157	24	22	18	34	1.96
1780010--1780119	43	2.5	43	82	5	114	23	20	16	39	1.92
1781373--1781508	30	4.6	30	76	12	93	59	9	10	20	1.58
1781396--1781508	30	3.8	30	76	11	106	60	9	11	18	1.58
1784393--1784425	15	2.4	14	90	10	50	36	6	0	57	1.23
1784523--1784553	15	2.0	16	93	6	55	41	6	0	51	1.27
1793732--1793780	25	1.9	24	84	12	62	48	0	2	48	1.12
1796115--1796156	22	2.0	21	90	4	66	61	7	7	23	1.47
1796776--1796814	10	3.9	10	82	0	51	46	0	12	41	1.42
1796786--1797142	126	2.8	127	95	0	626	53	6	8	32	1.56
1797452--1797484	15	2.3	15	90	10	52	21	3	3	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797605--1797654	22	2.3	22	92	0	82	42	10	28	20	1.84
1799753--1799782	15	2.0	15	93	0	51	56	0	0	43	0.99
1799785--1799814	14	2.1	15	93	6	53	53	0	6	40	1.27
1799757--1799817	24	2.5	25	73	10	63	54	0	3	42	1.17
1800388--1800413	8	3.2	8	100	0	52	46	0	0	53	1.00
1800962--1801002	22	1.9	21	90	5	64	29	2	0	68	1.03
1801987--1802046	31	1.9	31	89	0	93	40	5	10	45	1.60
1802510--1802571	18	3.2	20	78	19	62	61	0	1	37	1.06
1802587--1802669	38	2.3	35	85	8	103	54	1	1	43	1.16
1802566--1802711	59	2.4	60	85	8	199	55	2	0	41	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11