genome.fa.s8463.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008463.1 Hibiscus syriacus cultivar Beakdansim tig00111276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1833679

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481589--481681	33	2.8	33	98	0	177	9	20	22	47	1.79
483531--483603	38	1.9	38	97	0	137	28	1	16	53	1.51
483526--483590	19	3.4	19	64	8	51	24	1	15	58	1.46
483585--483620	14	2.6	14	95	0	63	33	0	22	44	1.53
483727--483827	19	5.6	19	86	11	158	44	17	22	14	1.86
483834--484152	52	6.0	52	93	4	541	14	21	16	46	1.83
483856--484180	19	18.4	19	80	15	396	14	20	17	47	1.83
483856--484180	109	3.1	102	84	9	199	14	20	17	47	1.83
483875--484180	33	8.8	33	79	13	271	14	20	17	47	1.83
483856--484180	71	4.6	71	81	14	376	14	20	17	47	1.83
486484--486508	12	2.1	12	100	0	50	0	28	0	72	0.86
486683--486729	24	2.0	24	87	8	69	38	21	14	25	1.92
487402--487770	20	18.5	20	86	4	458	20	18	26	34	1.96
488865--488907	15	2.7	16	85	10	61	16	25	25	32	1.96
493566--493626	20	3.3	20	77	22	55	44	0	1	54	1.10
493566--493629	16	4.0	16	80	8	76	45	0	1	53	1.10
500274--500355	22	3.7	22	85	0	110	19	19	18	42	1.89
501270--501329	21	2.9	21	89	0	93	23	13	26	36	1.92
501594--501637	18	2.4	18	96	0	79	43	6	22	27	1.78
504301--504342	22	1.9	22	95	0	75	26	11	16	45	1.82
520605--520641	14	2.6	14	91	0	56	8	51	2	37	1.46
524746--524859	59	1.9	59	89	3	176	28	17	20	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524724--524869	59	2.4	57	81	9	175	30	21	19	29	1.97
528631--528676	12	3.6	12	81	16	56	45	17	19	17	1.85
528637--528677	12	3.1	13	80	19	57	46	14	17	21	1.84
530951--530990	21	1.9	21	94	0	71	30	15	7	47	1.72
530985--531083	33	3.0	33	94	1	164	32	7	15	45	1.73
531069--531123	13	4.2	13	75	13	58	34	3	12	49	1.59
531319--531375	21	2.7	21	88	0	87	19	26	24	29	1.98
531564--531610	17	2.8	17	96	0	85	38	8	12	40	1.74
531541--531613	17	4.6	15	81	6	65	34	10	12	42	1.78
531750--531789	21	1.9	21	89	0	62	27	25	27	20	1.99
531985--532039	13	4.2	13	75	13	58	49	12	3	34	1.59
532025--532124	34	3.0	33	91	4	157	46	15	7	32	1.72
532119--532158	21	1.9	21	94	0	71	47	7	15	30	1.72
539407--539431	2	12.5	2	100	0	50	52	0	0	48	1.00
540378--540415	14	2.6	15	80	20	53	65	0	0	34	0.93
540408--540438	2	15.5	2	93	0	53	54	0	0	45	0.99
543484--543528	2	23.0	2	90	4	74	48	2	0	48	1.13
547049--547075	12	2.2	12	100	0	54	55	0	7	37	1.28
547599--547670	35	2.1	35	100	0	144	29	20	25	25	1.99
548346--548422	3	24.7	3	89	5	93	71	0	0	28	0.86
548669--549053	84	4.6	84	83	1	376	24	17	23	34	1.96
549125--549474	124	2.8	124	88	0	504	26	16	24	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549543--549942	110	3.5	110	69	14	316	26	19	22	33	1.97
549356--549943	240	2.4	242	87	2	838	26	19	22	31	1.98
551035--551283	95	2.6	95	86	5	331	32	16	16	34	1.91
554444--554482	3	13.3	3	84	15	55	69	0	0	30	0.89
555555--555614	27	2.3	26	91	2	93	50	11	3	35	1.56
558592--558647	18	3.1	18	97	0	103	28	35	8	26	1.87
560797--561356	284	2.0	284	97	0	1066	36	15	15	32	1.89
567141--567176	14	2.5	15	95	4	65	41	0	0	58	0.98
567207--567342	32	4.6	32	80	17	184	36	0	10	52	1.41
567234--567276	22	2.0	22	95	0	77	37	0	11	51	1.39
567156--567490	54	6.1	54	81	9	410	34	0	11	52	1.41
567265--567317	14	3.5	14	72	18	52	37	0	5	56	1.23
567320--567389	21	3.1	21	74	18	77	30	0	17	52	1.44
567366--567473	32	3.7	32	73	23	128	35	0	12	51	1.40
567421--567570	80	1.9	80	97	0	282	33	0	14	52	1.41
568322--568405	30	2.7	31	79	7	98	53	8	10	27	1.64
578157--578366	65	3.2	64	76	12	196	26	18	23	31	1.97
580994--581075	23	3.6	23	71	17	73	29	21	28	20	1.98
586808--586856	19	2.7	17	84	9	53	26	20	28	24	1.99
586828--587037	65	3.2	64	79	12	232	25	18	24	30	1.98
588332--588394	30	2.1	31	87	3	92	53	12	9	23	1.67
588771--588869	25	4.1	24	80	16	107	45	4	1	49	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588771--588861	46	1.9	48	91	4	150	46	3	0	50	1.17
589179--589216	20	1.9	20	94	0	67	26	28	21	23	1.99
589221--589375	64	2.4	63	85	5	206	31	21	16	30	1.95
589221--589395	64	2.7	62	80	9	201	30	21	16	31	1.95
597942--598096	64	2.4	63	92	5	251	29	22	18	29	1.97
597942--598116	64	2.7	62	86	9	237	28	23	18	29	1.98
598975--599001	13	2.1	13	100	0	54	7	22	48	22	1.75
599197--599392	100	2.0	100	93	2	340	32	23	16	28	1.96
599796--599820	12	2.1	12	100	0	50	68	16	8	8	1.38
607492--607608	57	2.1	57	85	3	155	25	17	24	32	1.96
607701--607742	20	2.0	21	82	13	52	47	4	0	47	1.23
612634--613056	4	105.8	4	99	0	792	50	1	25	23	1.58
614409--614860	224	2.0	222	89	6	700	29	11	18	40	1.86
615226--615271	18	2.6	18	89	3	67	28	28	8	34	1.87
617474--617511	16	2.4	16	83	12	51	42	0	0	57	0.98
617477--617511	17	2.1	17	89	5	54	42	0	0	57	0.99
620633--620755	31	4.0	31	69	8	106	30	21	18	29	1.97
625156--625248	21	4.5	21	78	4	100	39	18	24	17	1.91
625156--625248	41	2.3	41	100	0	186	39	18	24	17	1.91
625175--625309	41	3.3	41	83	4	139	37	21	21	19	1.94
625828--625894	19	3.5	19	85	2	89	47	25	16	10	1.78
625890--626055	20	9.1	19	74	16	136	12	22	22	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625895--625971	39	2.0	39	87	5	111	9	19	25	45	1.80
625943--626030	33	2.6	33	92	1	140	11	25	25	38	1.89
628058--628178	42	2.9	42	80	2	118	23	35	18	23	1.95
628112--628178	21	3.2	21	66	6	55	23	35	20	19	1.95
629536--629571	14	2.6	14	95	0	63	30	0	25	44	1.54
629734--629860	33	3.9	32	85	8	184	14	22	19	43	1.88
632152--632176	12	2.1	12	100	0	50	0	28	0	72	0.86
632351--632404	24	2.2	24	90	0	81	38	20	16	24	1.92
633463--633520	20	2.9	20	94	0	98	37	22	22	17	1.93
633539--633616	33	2.4	33	88	0	111	15	23	19	42	1.89
635606--635661	20	2.9	19	86	5	85	35	23	25	16	1.94
635720--635777	14	3.9	14	79	16	71	10	17	24	48	1.78
635703--635793	32	2.8	33	94	3	166	12	18	21	47	1.81
635778--635832	20	2.8	19	83	8	65	16	23	23	36	1.94
636314--636358	18	2.5	18	88	0	72	13	15	44	26	1.83
637677--637714	20	1.9	20	88	0	58	50	21	15	13	1.78
637978--638021	22	2.0	22	95	0	79	18	15	45	20	1.85
638209--638302	20	4.7	20	80	2	89	23	18	24	34	1.96
638229--638306	41	1.9	41	86	0	111	21	16	21	39	1.92
638189--638303	20	5.7	20	78	5	88	23	17	23	35	1.95
638292--638406	21	5.5	21	78	5	108	18	23	16	41	1.89
638311--638409	20	4.8	20	73	8	90	19	21	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638311--638406	41	2.3	42	89	1	140	18	21	16	42	1.89
638416--638466	21	2.4	21	100	0	102	33	29	19	17	1.95
648152--648194	20	2.0	21	86	8	61	34	6	4	53	1.49
656058--656111	25	2.2	23	81	18	72	24	27	18	29	1.98
656067--656122	25	2.2	25	96	0	103	23	26	17	32	1.97
658901--659036	66	2.0	68	81	8	163	44	4	11	40	1.60
665641--665796	64	2.4	64	80	10	176	35	17	18	27	1.94
666307--666341	15	2.3	15	85	0	52	20	20	28	31	1.97
667789--667948	63	2.5	64	82	1	178	31	19	21	27	1.97
668497--668549	22	2.4	22	90	0	79	20	24	26	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11