genome.fa.s8463.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008463.1 Hibiscus syriacus cultivar Beakdansim tig00111276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1833679

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935534--935571	19	2.0	19	100	0	76	42	5	21	31	1.75
939812--939849	20	2.0	20	89	5	60	44	5	5	44	1.49
943814--943873	24	2.5	24	88	0	84	46	0	36	16	1.47
945314--945497	101	1.8	99	81	6	228	52	4	9	34	1.53
945435--945469	19	1.9	18	88	11	54	48	5	5	40	1.51
948357--948403	17	2.8	17	84	12	62	36	0	0	63	0.94
948357--948401	16	2.7	17	86	10	58	35	0	0	64	0.94
948402--948436	18	1.9	18	88	0	52	74	5	0	20	1.02
948833--948873	2	20.5	2	100	0	82	48	0	0	51	1.00
950432--950464	15	2.3	15	89	5	50	54	3	0	42	1.15
952655--952729	4	19.0	4	75	20	61	81	0	17	1	0.76
952651--952718	9	7.2	9	80	12	75	80	0	17	1	0.78
952655--952729	23	3.4	22	77	18	84	81	0	17	1	0.76
952654--952725	38	1.9	37	88	2	108	81	0	16	1	0.75
953676--954532	51	16.7	51	96	0	1579	24	14	23	37	1.92
953676--954551	308	2.8	308	97	1	1614	24	14	23	37	1.92
953676--954532	257	3.3	256	98	0	1642	24	14	23	37	1.92
956314--956390	3	25.0	3	84	5	100	37	0	1	61	1.05
956453--957081	114	5.5	114	96	0	1120	37	13	19	28	1.90
955175--956064	114	7.8	114	97	0	1610	37	14	19	29	1.91
957325--957554	3	77.3	3	84	6	299	36	1	1	60	1.15
958226--958254	13	2.2	13	100	0	58	0	31	62	6	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958703--958738	19	1.9	19	94	5	65	22	0	5	72	1.05
969997--970067	4	19.0	4	84	13	73	84	0	15	0	0.62
969993--970056	9	7.2	9	81	16	71	84	0	15	0	0.63
969993--970067	20	3.9	19	83	13	93	84	0	16	0	0.63
970001--970067	7	9.6	7	83	6	82	85	0	14	0	0.61
969997--970067	29	2.5	28	84	6	99	84	0	15	0	0.62
970005--970066	1	62.0	1	73	0	52	87	0	12	0	0.55
971015--971871	51	16.7	51	96	0	1579	24	14	23	37	1.92
971015--971890	308	2.8	308	97	1	1614	24	14	23	37	1.92
971015--971871	257	3.3	256	98	0	1642	24	14	23	37	1.92
972514--973404	114	7.8	114	97	0	1610	37	14	19	29	1.91
973650--973891	3	80.3	3	89	0	367	35	1	1	61	1.13
974561--974589	13	2.2	13	100	0	58	0	31	62	6	1.22
975038--975073	19	1.9	19	94	5	65	22	0	5	72	1.05
975128--975160	15	2.3	15	89	5	50	54	3	0	42	1.15
979207--979236	3	10.0	3	100	0	60	66	0	0	33	0.92
980800--980927	59	2.2	59	84	2	177	32	18	7	41	1.78
1014974--1015022	21	2.4	21	89	3	73	12	10	38	38	1.77
1014974--1015034	21	2.9	21	85	4	61	14	8	36	40	1.76
1015147--1015205	18	3.4	17	75	15	59	25	25	28	20	1.99
1015230--1015272	22	2.0	22	95	0	77	27	20	25	25	1.99
1015493--1015545	18	2.7	19	88	11	72	47	11	13	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1022509--1022784	41	6.8	41	80	4	218	31	9	19	39	1.84
1022520--1022782	82	3.2	81	81	0	265	31	9	19	39	1.84
1022626--1022807	82	2.2	82	81	6	226	32	9	19	37	1.85
1025765--1025797	4	8.2	4	100	0	66	24	0	0	75	0.80
1026293--1026405	54	2.1	53	81	6	129	30	30	15	22	1.95
1026323--1026883	54	10.4	54	80	1	505	29	29	21	19	1.98
1027361--1028021	182	3.6	181	86	3	887	44	13	14	26	1.83
1027361--1028021	365	1.8	364	86	2	952	44	13	14	26	1.83
1028259--1029154	200	4.6	198	76	11	735	36	15	15	32	1.89
1033370--1034020	324	2.0	324	95	0	1167	20	33	16	29	1.95
1036072--1036277	32	6.9	30	72	18	130	41	1	0	57	1.08
1036139--1036192	27	2.1	26	89	6	83	44	1	0	53	1.11
1036182--1036274	28	3.0	33	78	20	103	37	0	0	62	0.96
1036149--1036277	13	8.9	15	68	20	87	38	0	0	60	1.02
1036185--1036274	16	5.2	19	72	20	81	37	0	0	62	0.96
1039865--1039896	2	16.0	2	100	0	64	50	0	0	50	1.00
1040291--1040325	5	7.0	5	100	0	70	20	20	20	40	1.92
1044570--1044613	20	2.2	20	84	4	63	65	0	15	18	1.27
1050961--1050994	17	2.1	16	88	5	50	76	0	8	14	1.01
1056909--1056959	19	2.6	19	84	3	57	35	31	11	21	1.90
1057030--1057088	20	3.0	20	94	0	100	45	23	11	18	1.83
1057386--1057439	24	2.2	24	93	0	90	40	20	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1058194--1058224	16	1.9	16	93	0	53	67	0	3	29	1.06
1058274--1058306	16	2.1	16	100	0	66	36	0	45	18	1.49
1058403--1058508	19	5.4	20	76	13	87	33	10	21	34	1.88
1058403--1058510	39	2.8	39	80	7	121	32	10	21	36	1.87
1059446--1059515	31	2.3	31	89	0	104	35	10	22	31	1.87
1060480--1060535	22	2.6	21	72	13	51	48	1	3	46	1.30
1062671--1062717	2	23.5	2	100	0	94	51	0	48	0	1.00
1064913--1065310	198	2.0	199	99	1	780	37	23	6	33	1.79
1073315--1073368	21	2.6	21	96	0	99	29	25	24	20	1.99
1073335--1073433	41	2.4	41	89	3	146	34	19	21	25	1.96
1073356--1073428	20	3.6	20	75	17	87	36	17	20	24	1.94
1073355--1073443	41	2.2	41	89	4	135	34	19	20	25	1.96
1073374--1073465	21	4.4	21	71	13	82	35	20	19	23	1.95
1074712--1074736	2	12.5	2	100	0	50	48	0	0	52	1.00
1077097--1077140	12	3.8	12	90	3	63	11	9	47	31	1.71
1077095--1077140	24	2.0	24	91	4	76	10	10	47	30	1.73
1077158--1077218	24	2.6	25	78	17	69	44	0	0	55	0.99
1077252--1077284	13	2.5	13	90	0	57	15	15	48	21	1.81
1077347--1077383	6	6.2	6	100	0	74	0	64	16	18	1.29
1077765--1077845	32	2.6	32	82	9	105	25	7	23	43	1.80
1077828--1078016	28	6.4	28	72	16	139	17	8	30	43	1.78
1077839--1078018	33	6.0	30	74	15	133	17	7	29	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1077801--1077986	96	2.0	90	86	8	257	19	8	29	43	1.80
1077925--1078019	27	3.5	27	88	2	145	13	8	32	45	1.74
1078061--1078094	16	2.1	16	94	0	59	26	26	5	41	1.78
1086063--1086643	2	293.5	2	61	25	82	46	3	4	44	1.42
1086085--1086341	26	9.7	28	68	22	112	45	4	5	44	1.45
1086038--1086133	26	3.9	24	72	24	76	45	4	4	45	1.41
1086098--1086197	33	3.2	33	77	13	120	45	5	5	45	1.47
1086113--1086311	77	2.5	75	77	15	215	46	4	5	44	1.45
1086325--1086361	11	3.4	11	88	0	56	51	5	5	37	1.48
1086391--1086464	11	6.5	11	75	10	69	51	1	1	45	1.18
1086380--1086471	33	2.8	32	82	8	105	51	1	1	46	1.15
1086571--1086632	25	2.8	20	74	21	61	46	6	4	41	1.51
1086066--1086612	18	28.6	18	67	20	147	46	3	4	45	1.42
1086568--1086639	27	2.8	25	82	6	72	48	5	4	41	1.45
1086862--1086913	21	2.5	22	81	6	63	23	25	17	34	1.96
1086897--1086946	20	2.5	20	100	0	100	38	20	18	24	1.93
1087191--1087237	19	2.5	19	96	0	85	12	21	21	44	1.85
1087202--1087245	19	2.3	19	88	0	61	15	20	18	45	1.85
1087343--1087379	14	2.6	14	91	0	65	45	21	0	32	1.52
1088755--1088834	42	1.9	42	84	0	106	22	17	38	21	1.93
1089236--1089361	19	6.8	19	78	10	136	46	21	20	11	1.83
1089260--1089358	33	2.8	35	86	7	130	45	22	21	11	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089358--1089442	19	4.4	19	85	8	118	9	16	25	48	1.76
1089358--1089462	39	2.7	38	89	5	140	10	18	23	47	1.79
1089358--1089468	58	1.9	58	85	3	152	10	18	22	47	1.80
1089368--1089468	19	5.2	19	86	3	130	8	19	21	49	1.75
1089559--1089933	189	2.0	182	87	4	536	46	18	12	22	1.82
1089559--1089933	94	4.1	94	90	3	539	46	18	12	22	1.82
1092680--1092823	39	3.8	38	83	8	145	47	20	20	11	1.81
1092719--1092822	33	2.9	35	87	8	131	47	20	23	9	1.79
1092680--1092825	19	7.8	19	78	10	158	47	20	21	10	1.80
1092852--1092882	14	2.3	14	94	5	55	6	12	22	58	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11