genome.fa.s8463.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008463.1 Hibiscus syriacus cultivar Beakdansim tig00111276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1833679

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294423--294472	24	2.1	24	88	0	73	32	18	24	26	1.97
294434--294485	24	2.2	24	82	3	61	34	19	25	21	1.96
296502--296547	22	2.1	22	87	0	65	34	26	23	15	1.94
296572--296616	22	2.0	22	82	4	54	31	31	26	11	1.91
297220--297430	31	6.9	31	91	6	342	19	18	22	38	1.93
299416--299601	60	3.1	59	79	4	178	38	4	23	32	1.76
313090--313176	42	2.1	42	95	0	156	36	8	25	29	1.85
313091--313165	21	3.5	22	67	15	59	37	8	26	28	1.84
313801--313841	21	2.0	21	95	0	73	17	19	29	34	1.94
316281--316351	35	2.0	36	91	2	117	19	32	29	18	1.96
316663--316691	15	2.0	15	93	6	51	51	13	20	13	1.75
319285--319354	34	2.1	32	86	5	95	22	30	15	31	1.95
319719--319814	21	4.7	21	93	2	151	29	15	32	22	1.95
319719--319814	41	2.3	41	91	3	149	29	15	32	22	1.95
319834--319934	21	4.8	21	79	12	109	24	16	33	24	1.96
320355--320433	31	2.6	31	91	2	124	30	35	2	31	1.71
324721--324775	21	2.7	21	91	2	85	30	18	30	20	1.96
324840--324864	13	1.9	13	100	0	50	24	20	40	16	1.91
324954--325010	29	2.0	29	89	6	89	47	15	3	33	1.63
324954--325012	30	2.0	29	93	3	100	45	15	5	33	1.68
325045--325087	2	21.5	2	100	0	86	51	0	0	48	1.00
329043--329099	15	3.7	15	69	17	53	26	29	28	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329149--329191	15	2.8	15	89	3	68	25	27	32	13	1.94
332449--332512	19	3.3	19	76	6	58	35	14	14	35	1.86
333597--333903	132	2.3	132	94	4	532	47	2	7	42	1.44
334305--334332	3	9.3	3	100	0	56	32	0	0	67	0.91
342142--342212	27	2.5	28	76	19	76	22	7	1	69	1.21
342355--342395	17	2.4	17	92	8	66	21	14	0	63	1.30
342511--342535	13	1.9	13	100	0	50	16	12	0	72	1.13
345545--345586	14	3.1	14	80	13	61	80	7	11	0	0.88
345545--345595	26	2.0	25	96	3	93	82	5	11	0	0.83
345545--345595	25	2.0	26	92	3	86	82	5	11	0	0.83
345562--345629	16	4.1	15	77	20	57	80	1	11	5	0.94
345566--345629	17	3.7	17	82	12	69	81	1	10	6	0.94
347336--347406	36	2.0	36	91	5	117	22	18	14	45	1.85
347420--347580	37	4.4	36	82	5	189	24	19	14	42	1.88
347420--347580	73	2.2	73	87	0	223	24	19	14	42	1.88
347529--347678	67	2.2	68	84	8	189	30	22	12	34	1.91
347633--347753	33	3.6	33	83	11	156	42	19	8	30	1.80
347633--347759	69	1.9	66	85	8	175	40	19	8	30	1.82
347746--348008	84	3.1	84	78	4	276	35	22	17	23	1.95
350179--350207	12	2.3	13	94	5	51	31	0	0	68	0.89
350818--350876	21	2.6	22	85	15	84	42	6	0	50	1.28
350804--350897	25	3.6	27	77	21	85	42	4	0	53	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350876--350939	25	2.6	25	100	0	128	40	0	0	59	0.97
357084--357233	60	2.5	60	83	0	165	31	24	2	41	1.69
357139--357236	29	3.3	29	70	13	74	31	23	4	40	1.73
357486--357518	12	2.8	12	86	13	50	51	3	6	39	1.42
357630--357668	15	2.4	16	87	8	53	58	0	0	41	0.98
357590--357680	24	3.7	24	68	18	71	54	2	1	41	1.19
363293--363362	31	2.3	30	97	0	95	15	12	17	54	1.71
369278--369324	25	1.9	24	82	4	58	57	8	2	31	1.41
370516--370578	32	2.0	31	90	3	99	36	12	25	25	1.91
372523--372589	30	2.2	31	81	2	73	32	26	19	20	1.97
372549--372668	63	1.9	63	84	5	163	34	21	15	29	1.94
372548--372675	31	4.1	31	72	9	98	35	21	14	28	1.93
373000--373051	20	2.8	17	78	18	50	30	21	5	42	1.76
375348--375387	20	2.1	19	90	4	62	20	17	0	62	1.33
378765--378808	18	2.4	19	88	11	65	25	27	18	29	1.98
381989--382025	13	2.9	14	84	15	53	43	2	8	45	1.47
383859--383904	19	2.4	21	75	20	55	65	15	0	19	1.28
389612--389645	18	1.9	17	88	5	50	32	2	0	64	1.08
392774--392817	20	2.2	20	83	4	52	59	0	0	40	0.98
392831--392879	17	3.1	17	70	27	52	59	12	8	20	1.58
405447--405484	2	20.0	2	84	10	53	50	0	0	50	1.00
405434--405480	22	2.1	23	84	7	62	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405504--405536	17	1.9	17	93	0	57	33	0	0	66	0.92
405521--405561	21	1.9	21	85	5	55	51	0	2	46	1.14
405932--405957	2	13.0	2	100	0	52	50	0	0	50	1.00
408388--408415	3	9.3	3	100	0	56	32	0	0	67	0.91
411663--411711	24	2.0	24	84	7	64	44	18	2	34	1.61
413273--413346	24	3.1	25	83	11	93	21	21	24	32	1.98
414509--414577	23	3.0	23	82	0	84	28	23	24	23	1.99
415200--415361	63	2.5	64	78	4	150	24	17	23	33	1.96
417699--417945	136	1.8	130	80	10	293	29	14	20	36	1.92
418073--418135	28	2.2	30	91	5	103	30	0	14	55	1.39
420983--421040	22	2.7	21	86	2	80	37	1	8	51	1.43
421029--421079	24	2.2	22	86	6	66	49	3	3	43	1.39
422251--422289	20	1.9	21	89	5	62	56	2	0	41	1.13
422773--422932	80	2.0	80	97	2	304	25	21	16	37	1.93
429756--429818	23	3.0	21	86	6	83	20	34	25	19	1.96
432366--432409	23	2.0	23	81	4	54	45	11	6	36	1.67
433524--433591	21	3.7	18	78	18	68	5	39	1	52	1.34
433542--433594	21	2.5	21	90	0	88	3	39	1	54	1.29
435419--435483	13	4.7	13	76	12	58	63	15	9	12	1.52
435415--435497	42	2.1	38	88	8	121	63	14	8	13	1.50
435413--435483	29	2.6	27	78	10	81	63	15	8	12	1.51
436883--436910	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446987--447030	9	4.6	9	78	15	52	18	65	2	13	1.36
446992--447037	21	2.2	21	96	0	83	17	60	4	17	1.51
447034--447067	12	2.8	12	86	0	50	26	44	14	14	1.84
447461--447511	20	2.5	20	87	6	68	50	9	17	21	1.74
447476--447517	20	2.2	19	91	8	68	52	9	19	19	1.72
455872--456587	108	6.7	107	73	13	512	31	3	11	53	1.52
455872--456587	323	2.2	317	85	5	921	31	3	11	53	1.52
461596--461634	16	2.4	16	91	4	60	46	2	7	43	1.46
461630--461664	17	2.1	17	88	0	52	37	2	0	60	1.12
461681--461806	46	2.7	46	88	0	198	44	9	2	43	1.49
461951--461982	17	1.9	17	93	6	57	53	0	6	40	1.26
465627--465659	17	1.9	17	88	11	50	33	3	15	48	1.60
473204--473233	9	3.4	9	95	4	53	83	10	6	0	0.81
475837--475863	9	3.0	9	100	0	54	22	11	11	55	1.66
478282--478333	20	2.6	20	96	0	95	38	26	13	21	1.90
478323--478422	21	4.8	20	71	8	65	37	23	19	21	1.95
478387--478441	21	2.7	20	88	2	74	45	25	18	10	1.82
478409--478582	20	8.6	20	83	5	217	34	26	19	19	1.96
478409--478582	60	2.9	60	85	0	249	34	26	19	19	1.96
478964--479034	33	2.2	33	92	0	115	11	22	18	47	1.80
479154--479208	14	3.6	14	73	21	56	40	23	27	9	1.85
479154--479224	33	2.2	33	92	0	115	42	25	23	8	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479220--479317	19	5.7	19	70	22	81	10	24	22	42	1.84
479242--479331	14	5.7	14	74	23	81	8	25	23	42	1.83
479225--479339	33	3.5	33	95	0	212	9	24	20	45	1.81
481037--481418	185	2.1	186	98	0	748	22	12	18	46	1.83
481037--481416	93	4.1	93	98	0	744	22	12	18	46	1.83
481460--481588	19	7.3	19	75	17	125	45	28	17	8	1.77
481496--481588	33	2.8	32	91	4	150	46	27	18	7	1.76
481460--481588	52	2.5	52	74	14	140	45	28	17	8	1.77
481584--481718	19	7.6	19	76	16	137	10	19	24	45	1.81
481606--481662	14	3.7	14	77	20	60	8	21	24	45	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11