genome.fa.s8463.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008463.1 Hibiscus syriacus cultivar Beakdansim tig00111276_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1833679

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1244834--1244900	35	1.9	35	87	6	100	22	29	19	28	1.98
1246364--1246405	15	2.9	15	96	3	77	57	0	38	4	1.20
1248079--1248118	21	1.9	21	94	0	71	32	10	7	50	1.64
1248340--1248410	20	3.8	20	73	17	71	22	28	19	29	1.98
1248342--1248408	35	1.9	35	87	0	98	22	28	19	29	1.98
1251527--1251572	7	6.7	7	92	5	76	0	15	2	82	0.76
1251529--1251572	13	3.3	13	93	3	70	0	13	2	84	0.73
1252028--1252274	132	1.9	132	82	5	311	27	19	21	31	1.98
1252046--1252312	88	3.0	85	68	11	216	27	19	21	31	1.97
1252117--1252591	132	3.6	133	81	4	480	29	19	20	31	1.97
1252046--1252377	176	1.9	176	91	1	549	28	18	22	30	1.97
1252084--1252359	88	3.1	87	71	10	263	26	19	22	31	1.98
1252116--1252408	88	3.3	88	69	7	261	26	19	20	32	1.97
1252023--1252403	44	8.7	44	71	4	185	27	19	21	31	1.97
1252062--1252452	176	2.2	176	85	4	520	27	19	20	31	1.97
1252421--1252599	44	4.1	44	64	13	107	31	17	20	30	1.96
1252216--1252599	132	2.9	132	86	0	536	29	18	21	31	1.97
1253387--1253436	24	2.1	24	85	7	66	60	16	2	22	1.46
1254339--1254375	20	1.9	19	89	10	58	24	32	24	18	1.97
1260051--1260132	20	3.9	21	75	13	71	25	35	24	14	1.94
1262770--1262825	23	2.5	23	94	5	98	17	44	23	14	1.85
1262934--1262970	20	1.9	19	89	10	58	24	32	24	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1274145--1274501	91	3.9	91	85	2	450	24	21	16	37	1.93
1274145--1274492	181	1.9	182	87	4	506	24	21	16	37	1.93
1274895--1275078	75	2.5	75	83	4	221	38	10	19	31	1.86
1275098--1275356	36	7.4	36	77	10	225	38	13	22	26	1.91
1275067--1275283	101	2.1	102	84	6	280	38	12	22	26	1.90
1275196--1275356	37	4.4	37	86	1	182	38	13	21	26	1.91
1275197--1275356	73	2.2	73	82	2	196	38	13	21	25	1.91
1275098--1275421	175	1.9	173	85	3	454	38	12	20	27	1.89
1275308--1275431	65	1.9	65	85	3	169	38	12	16	31	1.87
1275317--1275444	65	2.0	65	81	3	150	40	14	15	29	1.86
1275424--1275581	36	4.6	36	70	12	134	39	13	20	26	1.90
1275373--1275471	50	2.0	51	83	2	128	42	14	16	27	1.86
1275453--1275629	66	2.7	64	87	6	255	37	11	22	28	1.90
1275271--1275573	152	2.0	153	86	5	427	38	13	19	28	1.89
1275600--1275946	76	4.6	75	81	6	344	40	13	17	28	1.87
1275758--1275889	36	3.6	35	65	10	84	43	12	15	28	1.84
1275600--1275924	151	2.2	151	81	6	381	40	13	16	28	1.87
1275994--1276188	36	5.3	36	76	8	160	38	10	17	33	1.84
1278659--1278695	13	2.6	15	79	16	51	48	8	24	18	1.75
1278848--1279140	149	2.0	149	84	1	390	18	26	19	35	1.95
1280124--1280166	18	2.4	18	80	7	52	44	0	6	48	1.29
1281185--1281216	15	2.0	17	88	11	50	59	12	6	21	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1282313--1282343	13	2.4	13	100	0	62	6	6	0	87	0.68
1282301--1282349	19	2.6	18	83	9	53	6	10	2	81	0.94
1285987--1286047	21	3.2	21	63	29	55	31	3	21	44	1.68
1285981--1286096	35	3.3	35	90	4	171	29	4	19	46	1.69
1290000--1290025	10	2.6	10	100	0	52	11	50	0	38	1.39
1291959--1291987	15	1.9	15	100	0	58	62	17	0	20	1.33
1292853--1292894	13	3.2	13	80	12	50	69	0	4	26	1.08
1293014--1293071	12	5.0	12	73	12	50	68	3	0	27	1.05
1294461--1294591	36	3.7	36	85	11	155	32	10	16	40	1.83
1294631--1294705	29	2.6	29	85	6	98	33	9	18	38	1.83
1294631--1294710	30	2.7	29	84	5	99	31	10	20	38	1.85
1294693--1294876	36	5.3	36	67	20	104	39	14	19	27	1.90
1294665--1294919	102	2.5	102	92	2	424	37	12	18	31	1.88
1294794--1294866	37	2.0	37	89	5	112	41	13	19	26	1.88
1294796--1294880	37	2.3	37	83	2	109	42	14	18	24	1.88
1294896--1294934	15	2.6	15	91	0	60	35	10	17	35	1.84
1294928--1295055	39	3.2	39	78	8	157	35	14	18	31	1.92
1294913--1295073	39	4.0	41	75	7	132	35	13	17	34	1.88
1295063--1295177	36	3.2	36	68	14	110	41	11	15	31	1.82
1295049--1295352	72	4.2	72	92	0	428	41	14	16	28	1.87
1295079--1295192	36	3.2	35	71	9	113	42	13	15	28	1.84
1295091--1295344	36	7.1	35	65	18	128	40	14	17	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1295082--1295353	72	3.8	72	93	0	436	40	14	17	26	1.89
1295611--1295663	28	1.9	27	92	3	88	30	11	26	32	1.91
1299531--1299572	13	3.2	13	80	12	50	69	0	4	26	1.08
1299528--1299628	22	4.5	22	68	18	57	66	0	4	27	1.19
1299656--1299735	3	26.7	3	69	18	51	65	3	1	30	1.18
1299689--1299739	12	4.4	12	75	9	61	70	1	0	27	0.98
1299690--1299740	22	2.4	22	83	3	68	70	1	0	27	0.98
1301150--1301287	36	3.8	37	82	12	180	30	10	19	39	1.85
1301218--1301289	34	2.1	34	92	2	119	29	9	20	40	1.85
1301150--1301290	37	4.0	33	81	11	149	29	9	19	41	1.84
1301315--1301396	29	2.8	29	82	8	96	36	10	15	36	1.83
1301382--1301568	36	5.4	36	69	15	133	39	12	19	28	1.88
1301288--1301657	102	3.7	102	87	5	490	36	12	19	31	1.89
1301482--1301554	37	2.0	37	86	5	103	41	12	19	27	1.87
1301484--1301568	37	2.3	38	80	8	95	42	12	18	25	1.86
1301609--1301739	39	3.3	39	78	8	154	35	12	19	31	1.90
1301578--1301742	82	2.0	82	93	0	285	33	12	20	33	1.89
1301618--1301742	43	3.0	42	77	9	148	32	13	19	34	1.91
1301772--1301956	36	5.1	36	68	17	132	40	15	16	27	1.89
1301755--1301953	72	2.8	72	93	0	335	40	15	17	27	1.89
1307125--1307149	3	8.3	3	100	0	50	68	0	0	32	0.90
1307367--1307408	13	3.2	13	80	12	50	69	0	4	26	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1307525--1307575	12	4.4	12	75	9	61	70	1	0	27	0.98
1307526--1307576	22	2.4	22	83	3	68	70	1	0	27	0.98
1308976--1309111	36	3.8	36	83	11	165	31	9	17	41	1.82
1309139--1309223	29	2.9	29	81	11	102	35	9	17	37	1.82
1309206--1309291	36	2.4	36	86	0	118	40	12	20	25	1.88
1309178--1309482	102	3.0	102	90	1	459	36	11	20	32	1.87
1309307--1309394	37	2.4	38	83	5	101	38	10	21	29	1.86
1309434--1309556	39	3.1	39	70	13	113	35	17	17	29	1.93
1309403--1309571	82	2.1	82	91	0	275	34	14	17	34	1.90
1309448--1309571	43	3.0	43	68	13	114	34	16	16	32	1.91
1309589--1309842	36	7.1	35	63	18	101	40	12	17	28	1.87
1309567--1309850	72	3.9	72	92	0	433	41	12	17	28	1.86
1311105--1311286	95	1.9	95	88	2	276	32	18	16	32	1.93
1315220--1315261	13	3.2	13	80	12	50	69	0	4	26	1.08
1315345--1315445	3	33.7	3	76	20	88	67	2	0	28	1.12
1316843--1316982	36	4.0	35	82	10	162	31	10	17	41	1.82
1316842--1316981	37	4.0	33	79	12	147	31	10	17	40	1.83
1317007--1317087	29	2.8	30	83	7	96	39	7	16	37	1.76
1317074--1317261	36	5.4	36	71	14	160	39	13	19	27	1.89
1317175--1317261	37	2.4	36	88	1	120	40	13	20	25	1.89
1317046--1317350	102	3.0	102	92	1	486	38	11	19	31	1.87
1317292--1317421	39	3.2	39	71	12	118	36	13	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1317271--1317439	82	2.1	82	88	0	248	36	11	18	33	1.87
1317271--1317424	39	3.8	42	73	13	117	37	12	18	31	1.88
1317426--1317630	36	5.7	36	68	12	125	42	11	15	30	1.82
1317428--1317719	72	4.0	72	88	0	386	42	12	16	28	1.85
1317457--1317710	36	7.1	35	68	16	153	41	12	16	28	1.86
1318231--1318411	95	1.9	94	87	1	263	30	17	18	33	1.94
1322379--1322420	13	3.2	13	80	12	50	69	0	4	26	1.08
1322376--1322436	30	2.0	30	81	12	72	70	1	3	24	1.11
1322536--1322577	22	1.9	22	90	0	66	66	4	0	28	1.12
1322574--1322610	19	1.9	19	89	10	58	70	0	5	24	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11