genome.fa.s8531.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008531.1 Hibiscus syriacus cultivar Beakdansim tig00111409_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3817888

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  15  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2817226--2817260	2	17.5	2	100	0	70	48	0	0	51	1.00
2817138--2817316	87	2.0	88	98	1	351	51	5	5	37	1.49
2818444--2818495	24	2.3	22	72	15	52	32	25	17	25	1.97
2821267--2821602	54	6.3	53	82	5	338	28	16	17	36	1.93
2821296--2821582	157	1.8	157	87	1	423	29	16	16	37	1.91
2823086--2823118	3	11.0	3	100	0	66	33	0	0	66	0.92
2823606--2823657	6	8.5	6	77	10	52	75	1	3	19	1.06
2827208--2827253	9	5.2	9	82	10	51	71	2	10	15	1.23
2827208--2827253	8	5.2	8	85	15	56	71	2	10	15	1.23
2832140--2832356	91	2.4	91	84	3	285	39	14	20	26	1.90
2832367--2832477	42	2.6	43	81	4	125	30	22	18	27	1.98
2832277--2832641	202	1.8	203	86	3	529	33	18	20	27	1.96
2832928--2832957	13	2.2	14	94	5	53	76	0	0	23	0.78
2834147--2834246	51	2.0	51	82	4	121	24	15	5	56	1.59
2840823--2840866	22	2.1	20	87	8	61	40	0	2	56	1.11
2841340--2841397	23	2.5	22	86	5	71	56	1	3	37	1.26
2841437--2841478	17	2.5	17	84	0	57	7	23	23	45	1.78
2843559--2843731	90	1.9	89	94	1	301	38	10	6	44	1.66
2844676--2845071	200	2.0	200	97	0	747	32	22	15	30	1.94
2850622--2850794	90	1.9	89	92	1	292	38	11	5	44	1.63
2856888--2856927	20	2.0	20	85	0	53	30	17	22	30	1.97
2856773--2857161	119	3.3	119	89	2	577	30	15	18	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2857236--2857482	124	2.0	123	84	3	327	37	15	21	25	1.93
2857886--2857934	2	26.5	2	80	15	61	51	0	0	48	1.00
2857885--2857940	14	4.3	13	78	14	53	48	0	0	51	1.00
2857887--2857947	16	4.1	14	81	12	52	50	0	0	49	1.00
2865702--2865750	24	2.0	24	84	0	62	34	24	20	20	1.96
2865757--2865815	22	2.7	21	79	10	64	30	22	25	22	1.99
2871626--2872295	36	18.1	36	67	9	267	32	16	12	38	1.86
2871625--2872136	75	6.9	74	76	7	326	32	16	12	37	1.87
2871643--2872039	150	2.6	146	78	10	415	33	16	12	37	1.86
2872051--2872278	38	6.1	38	72	11	168	32	15	13	38	1.86
2872073--2872296	74	3.0	74	89	0	342	32	15	12	40	1.84
2871943--2872278	185	1.8	185	82	6	430	32	15	12	39	1.85
2872301--2872502	59	3.4	59	86	0	269	27	27	16	27	1.97
2872460--2872783	92	3.5	92	82	1	362	32	22	17	27	1.96
2872945--2872978	6	5.3	6	86	13	50	58	41	0	0	0.98
2872944--2872979	7	5.4	7	87	12	58	55	44	0	0	0.99
2872944--2872978	13	2.7	13	100	0	70	57	42	0	0	0.99
2885553--2885596	6	7.5	6	92	5	54	15	0	6	77	0.97
2885553--2885608	12	4.9	11	80	12	60	16	1	5	76	1.05
2885553--2885600	18	2.8	17	84	6	62	14	0	6	79	0.92
2885553--2885637	18	4.8	17	72	18	59	16	3	4	75	1.11
2885553--2885590	6	6.3	6	96	0	58	15	0	5	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2885560--2885637	30	2.7	29	74	23	67	16	3	3	75	1.10
2887772--2887824	17	3.1	17	88	0	79	37	5	16	39	1.73
2887869--2887923	17	3.2	17	79	5	67	43	10	16	29	1.82
2887901--2887943	17	2.5	18	79	20	56	41	13	11	32	1.81
2888837--2888964	3	42.7	3	100	0	256	32	0	0	67	0.91
2889134--2889173	20	2.0	21	90	5	64	42	0	0	57	0.98
2889709--2889782	30	2.4	30	80	6	78	22	12	14	50	1.77
2891341--2891385	18	2.5	18	92	0	72	22	26	24	26	2.00
2892119--2892209	44	2.1	44	87	0	128	24	24	17	34	1.96
2897749--2897806	29	2.0	30	82	3	73	41	8	15	34	1.78
2898321--2898362	21	2.0	20	90	4	66	21	26	19	33	1.97
2899083--2899175	44	2.1	44	89	0	141	24	19	23	32	1.98
2900068--2900513	241	1.9	231	82	5	561	33	17	16	32	1.92
2901630--2902265	326	1.9	330	83	5	817	33	14	10	40	1.81
2907500--2907526	14	1.9	14	100	0	54	22	22	7	48	1.75
2915292--2915473	43	4.2	44	80	4	192	29	25	15	29	1.96
2915292--2915472	87	2.1	86	83	5	222	29	24	15	29	1.96
2915447--2915588	43	3.3	43	84	4	151	28	22	22	26	1.99
2924899--2924955	29	2.0	29	93	6	98	36	12	8	42	1.74
2926901--2926952	20	2.5	21	84	3	70	38	19	23	19	1.93
2926941--2927035	20	4.7	20	75	7	84	32	24	20	23	1.98
2927765--2927818	24	2.2	24	90	0	81	22	16	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2927993--2928017	12	2.1	12	100	0	50	72	0	28	0	0.86
2930307--2930439	19	7.7	19	69	20	112	43	18	24	13	1.86
2930308--2930441	33	4.0	33	85	10	184	42	18	23	14	1.88
2930308--2930442	66	2.0	68	95	2	247	42	18	23	15	1.89
2930435--2930476	19	2.2	19	86	0	57	19	19	21	40	1.92
2930584--2930620	14	2.6	14	91	0	65	45	24	0	29	1.53
2931960--2932026	21	3.2	21	66	6	55	20	19	35	23	1.95
2931960--2932082	42	2.9	41	79	7	113	23	17	36	21	1.95
2934204--2934293	14	5.6	14	67	25	54	37	24	26	11	1.89
2934180--2934301	34	3.6	34	97	1	221	38	22	27	11	1.89
2934155--2934410	19	14.1	19	78	14	227	41	21	25	11	1.86
2935025--2935078	20	2.7	20	97	0	99	25	18	24	31	1.97
2934985--2935099	61	1.9	61	81	3	142	21	20	23	34	1.96
2935128--2935178	21	2.4	21	100	0	102	33	29	19	17	1.95
2936303--2936445	66	2.2	66	82	6	164	41	16	17	25	1.89
2939631--2939680	20	2.5	20	100	0	100	34	16	24	26	1.95
2939606--2939874	94	2.8	94	81	10	282	38	14	21	24	1.92
2939723--2939774	22	2.5	22	87	6	72	32	15	23	28	1.95
2939818--2939869	22	2.4	22	93	0	86	40	9	19	30	1.83
2940078--2940583	81	6.2	81	92	0	798	34	11	24	29	1.91
2940490--2940692	109	1.9	109	79	8	234	41	10	21	26	1.86
2943017--2943079	3	21.3	3	72	15	51	63	1	1	33	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2943262--2943891	134	4.7	134	87	1	854	31	18	19	30	1.95
2945626--2945866	59	4.1	59	90	0	392	31	12	19	35	1.89
2945834--2945888	28	2.0	28	96	0	101	20	16	27	36	1.93
2945731--2946011	145	1.9	146	89	0	438	29	13	20	36	1.91
2945862--2946071	59	3.6	59	92	0	323	28	12	21	37	1.90
2945657--2946070	204	2.0	205	91	0	668	29	12	20	36	1.90
2946748--2946922	83	2.1	84	87	3	255	34	14	18	32	1.91
2946881--2946963	41	2.0	41	86	4	114	31	9	19	39	1.84
2946892--2946978	41	2.1	41	86	0	120	31	11	19	37	1.87
2946809--2947042	124	1.9	124	83	3	310	32	9	21	36	1.86
2946826--2947081	124	2.1	124	79	5	277	32	10	21	35	1.88
2948636--2948742	41	2.6	41	81	12	121	33	18	18	28	1.95
2948766--2948904	42	3.4	42	73	9	124	32	17	22	27	1.97
2948766--2948904	41	3.4	41	72	15	115	32	17	22	27	1.97
2951309--2951342	17	1.9	18	88	5	52	11	0	20	67	1.21
2952015--2952047	16	2.1	16	88	5	50	42	3	3	51	1.32
2957485--2957536	21	2.5	22	78	12	56	44	13	42	0	1.44
2957505--2957552	21	2.3	21	85	0	60	45	16	35	2	1.59
2957954--2958121	44	3.9	43	74	9	153	32	16	15	36	1.90
2957954--2958121	86	1.9	88	82	3	214	32	16	15	36	1.90
2958053--2958208	85	1.8	85	86	2	224	33	16	13	36	1.88
2959661--2959695	4	8.8	4	100	0	70	22	0	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2966180--2966220	21	1.9	22	85	5	57	14	17	7	60	1.55
2974152--2974185	16	2.1	16	100	0	68	11	38	11	38	1.79
2977967--2978049	43	1.9	43	82	4	105	53	3	1	42	1.26
2980429--2980468	14	2.9	14	88	0	53	25	27	20	27	1.99
2980622--2980673	18	2.9	18	77	5	52	28	11	13	46	1.78
2998608--2998693	33	2.5	33	86	3	109	15	22	39	23	1.91
2998650--2998702	25	2.2	24	86	3	70	15	24	41	18	1.89
3003949--3003973	12	2.1	12	100	0	50	64	8	20	8	1.46
3004732--3004766	7	5.0	7	100	0	70	28	0	42	28	1.56
3011182--3011246	17	3.6	17	71	15	58	24	30	24	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19