genome.fa.s8531.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008531.1 Hibiscus syriacus cultivar Beakdansim tig00111409_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3817888

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  2  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270066--270126	3	20.7	3	86	9	90	32	1	1	63	1.13
270069--270137	29	2.4	29	88	7	97	31	2	1	63	1.18
272011--272056	2	23.0	2	100	0	92	50	0	0	50	1.00
275139--275183	14	3.2	14	84	15	58	40	0	4	55	1.20
275986--276024	20	2.0	20	100	0	78	35	0	10	53	1.35
286387--286459	38	1.9	38	88	2	112	41	30	9	19	1.83
286393--286471	38	2.1	38	81	6	90	46	26	7	18	1.76
286635--286707	38	2.0	38	91	5	123	41	36	9	12	1.75
286642--286719	36	2.1	38	88	4	115	46	33	7	12	1.71
286391--286883	253	2.0	248	89	2	754	38	25	10	24	1.88
293261--293318	18	3.2	18	65	26	50	29	12	18	39	1.87
295192--295672	117	4.1	115	78	8	390	26	20	13	39	1.89
295148--295682	116	4.6	117	77	9	469	26	19	13	40	1.89
295367--295714	117	3.0	117	81	4	303	26	19	13	41	1.88
298009--298042	16	2.1	16	94	0	59	8	20	0	70	1.13
299810--300023	94	2.3	94	82	6	238	32	16	16	34	1.92
304905--304952	20	2.4	20	92	0	78	35	27	18	18	1.95
311579--311636	28	2.2	25	84	12	71	17	5	24	53	1.64
314095--314129	15	2.3	15	95	0	61	5	28	8	57	1.52
324102--324153	24	2.2	24	82	0	59	50	17	11	21	1.77
324125--324216	24	3.8	24	89	2	123	41	18	16	23	1.90
324126--324234	48	2.3	48	82	6	114	43	18	14	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326694--326733	18	2.2	18	95	0	71	15	22	45	17	1.85
328813--328906	24	3.9	24	87	0	116	40	17	18	24	1.91
331384--331422	18	2.2	18	100	0	78	10	23	48	17	1.78
333482--333581	24	4.2	24	84	0	74	45	20	15	20	1.86
333499--333590	24	3.8	24	88	0	130	42	19	17	20	1.89
333500--333608	48	2.3	48	83	3	121	44	19	15	21	1.87
336146--336187	7	6.0	7	100	0	84	42	42	0	14	1.45
338003--338107	24	4.4	23	86	2	93	44	19	14	21	1.86
338020--338111	24	3.8	24	86	2	123	42	18	16	22	1.89
338021--338129	48	2.3	48	82	6	114	44	18	14	22	1.86
342406--342505	24	4.2	24	82	5	69	45	18	13	24	1.84
342423--342514	48	1.9	48	84	4	123	42	17	15	25	1.88
342423--342510	24	3.7	24	84	3	97	42	18	14	25	1.88
342447--342537	48	1.9	47	82	6	112	46	17	13	23	1.83
344456--344494	20	2.1	19	86	13	55	41	15	7	35	1.76
346244--346309	30	2.2	30	83	5	80	33	21	31	13	1.92
347003--347034	2	16.0	2	100	0	64	50	0	0	50	1.00
348888--349077	86	2.2	85	83	3	229	34	12	16	36	1.87
351048--351100	22	2.4	22	100	0	106	49	15	7	28	1.71
357616--357652	2	18.5	2	100	0	74	51	0	0	48	1.00
362228--362273	24	1.9	23	83	16	58	47	2	0	50	1.13
362326--362376	23	2.2	23	86	6	68	52	0	1	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362372--362428	19	3.1	18	80	9	62	40	0	0	59	0.97
362437--362494	27	2.1	27	84	12	75	50	0	0	50	1.00
368070--368224	81	1.9	81	87	0	229	27	21	14	35	1.93
368075--368241	81	2.1	81	82	0	199	27	22	14	35	1.93
368585--368827	46	5.3	46	91	1	396	22	22	10	44	1.83
368585--368828	93	2.6	92	92	0	398	22	22	10	44	1.83
369251--369344	42	2.3	41	83	1	107	26	24	11	37	1.90
371257--371287	10	3.1	10	100	0	62	90	0	9	0	0.46
373378--373466	46	1.9	47	84	6	119	32	10	6	50	1.62
375651--375689	20	2.0	20	89	0	60	30	33	15	20	1.94
375711--375799	46	2.0	46	90	2	144	28	25	19	26	1.99
381716--381767	20	2.6	20	100	0	104	25	25	28	21	1.99
391729--391834	26	4.3	26	75	15	100	5	21	0	72	1.05
391738--391811	22	3.2	21	80	14	76	5	24	0	70	1.08
391727--391839	48	2.3	47	80	10	122	6	21	0	72	1.06
391741--391850	46	2.3	46	82	14	129	6	21	0	71	1.08
395964--396011	13	3.7	13	94	0	87	27	20	18	33	1.96
395990--396155	85	2.0	85	93	0	287	29	21	18	31	1.96
403545--403575	3	10.3	3	100	0	62	64	0	0	35	0.94
403845--403881	17	2.2	17	95	0	65	29	16	2	51	1.58
404081--404317	125	1.9	125	87	1	350	21	20	14	43	1.87
406694--406743	4	12.5	4	95	0	64	42	0	8	50	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410546--410587	18	2.3	18	100	0	84	26	11	26	35	1.91
411313--411337	13	1.9	13	100	0	50	44	24	16	16	1.86
411335--411390	14	3.9	14	83	2	58	28	23	26	21	1.99
415090--415139	26	2.0	25	84	11	66	74	2	6	18	1.12
418960--419008	20	2.5	20	89	0	71	42	8	32	16	1.77
424404--424446	20	2.2	20	86	0	59	37	20	9	32	1.85
426912--427033	40	3.0	40	98	0	235	22	16	27	33	1.95
427138--427263	47	2.8	45	85	5	164	39	7	23	29	1.83
429014--429050	6	6.2	6	93	0	65	16	16	32	35	1.91
430144--430176	17	1.9	17	100	0	66	78	3	18	0	0.87
430143--430250	6	18.3	6	73	10	71	75	2	18	3	1.08
430144--430254	19	6.0	17	69	21	55	74	2	18	4	1.10
430165--430253	40	2.3	39	83	12	112	75	2	17	4	1.08
430143--430242	43	2.3	43	81	14	116	75	3	18	4	1.09
430180--430271	28	3.3	27	75	17	73	72	2	19	5	1.14
433997--434118	40	3.0	40	97	0	235	22	15	27	34	1.95
434223--434348	47	2.8	45	85	5	164	39	7	23	29	1.83
445008--445046	20	2.0	20	84	0	51	33	10	25	30	1.89
449682--449716	13	2.7	13	91	8	54	40	2	11	45	1.55
450211--450268	23	2.7	20	73	17	62	36	17	17	29	1.92
454703--454743	21	1.9	22	90	5	66	78	14	7	0	0.96
470900--470947	23	2.0	26	88	12	75	56	4	2	37	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471327--471415	7	13.0	7	75	9	58	30	0	25	43	1.55
471327--471414	20	4.3	21	80	8	92	29	0	26	44	1.55
471334--471407	27	2.7	28	76	15	84	29	0	24	45	1.53
471382--471406	13	1.9	13	100	0	50	36	0	16	48	1.46
471597--471646	3	17.3	3	91	8	86	68	0	0	32	0.90
476463--476519	21	2.7	21	91	0	87	40	17	14	28	1.88
476463--476529	21	3.2	21	89	0	80	37	19	11	31	1.88
478133--478182	22	2.3	22	96	0	91	62	10	12	16	1.55
491951--491993	23	1.9	23	85	4	61	62	0	4	32	1.15
492878--493011	59	2.2	60	81	1	162	34	19	4	41	1.72
493169--493313	59	2.4	59	80	7	159	41	3	20	35	1.69
495218--495251	16	2.1	17	89	10	54	23	0	5	70	1.09
499870--499903	16	2.1	17	89	10	54	23	0	5	70	1.09
500086--500176	47	1.9	47	84	4	121	18	19	26	35	1.95
508287--508318	14	2.4	13	94	5	55	37	0	0	62	0.95
510499--510614	61	1.9	61	83	0	151	31	21	21	25	1.98
510555--512042	232	6.4	232	83	4	1695	31	16	17	33	1.93
510571--512022	456	3.1	454	83	4	1692	31	16	17	33	1.93
512567--512608	21	2.0	21	90	0	66	35	9	23	30	1.87
513406--513446	22	1.9	21	90	5	64	26	2	36	34	1.70
517623--517676	5	10.6	5	79	16	58	1	14	3	79	0.95
517623--517678	30	2.0	27	83	16	71	1	14	3	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517929--517968	21	1.9	21	85	10	55	62	0	17	20	1.33
518456--518495	19	2.0	20	85	4	55	62	0	15	22	1.32
518906--518956	19	2.6	20	90	3	77	43	5	15	35	1.71
519762--519821	30	2.0	31	90	3	95	53	8	8	30	1.60
521049--521113	23	2.6	24	78	11	69	50	6	4	38	1.48
521231--521291	3	19.7	3	90	6	86	37	0	0	62	0.96
521231--521291	19	3.3	19	95	2	106	37	0	0	62	0.96
522164--522189	11	2.4	11	100	0	52	38	0	19	42	1.51
523224--523270	19	2.5	19	96	0	85	53	6	19	21	1.67
523507--525384	231	8.2	232	80	5	1894	32	16	17	34	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19