genome.fa.s8531.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008531.1 Hibiscus syriacus cultivar Beakdansim tig00111409_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3817888

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  3  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524751--525955	628	1.9	632	82	3	1534	31	15	17	35	1.92
525384--526837	233	6.3	230	79	5	1358	31	15	17	35	1.91
525384--526845	465	3.2	455	79	8	1470	31	15	17	35	1.92
526844--527497	230	2.8	230	85	3	850	32	16	16	34	1.91
527509--528053	230	2.4	230	77	2	572	32	16	17	34	1.92
527950--528159	103	2.0	103	83	0	258	27	20	17	33	1.96
528067--528839	232	3.3	230	80	6	853	31	15	17	35	1.91
528843--529906	232	4.6	232	83	3	1188	32	15	17	34	1.92
527629--529644	801	2.5	794	82	4	2368	31	15	17	35	1.92
529921--530969	232	4.5	232	80	4	1069	31	15	18	35	1.92
529273--530580	648	2.0	648	81	4	1550	31	15	18	34	1.92
530951--530990	21	1.9	21	89	0	62	32	12	25	30	1.92
532149--532245	42	2.3	41	76	1	95	24	25	19	29	1.98
532052--541742	463	20.9	465	69	13	3820	33	15	17	33	1.92
532051--541730	695	13.9	691	70	13	4136	33	15	17	33	1.92
535383--535470	42	2.1	41	80	2	95	27	20	19	32	1.97
532051--535475	232	14.8	233	80	4	3346	32	15	17	34	1.91
536746--538012	233	5.5	231	80	6	1334	32	15	17	34	1.92
537838--538206	191	2.0	182	82	6	436	34	15	15	34	1.90
537988--541742	232	16.3	231	81	5	3957	32	16	17	34	1.92
541743--543224	231	6.5	228	79	5	1327	32	14	17	34	1.91
541743--543224	460	3.2	456	79	5	1451	32	14	17	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544756--544794	19	2.1	19	85	9	53	23	15	0	61	1.33
545085--545588	231	2.2	230	85	2	654	33	14	16	35	1.89
545221--545982	394	1.9	395	85	4	1045	33	15	16	34	1.91
545592--546800	229	5.3	231	80	4	1195	32	16	17	34	1.92
546714--546809	41	2.3	41	80	3	95	22	21	20	34	1.97
547585--547680	31	3.1	31	80	8	115	34	22	16	26	1.95
551914--551984	31	2.3	31	82	0	88	33	19	21	25	1.97
554393--554432	21	1.9	21	84	0	53	47	2	17	32	1.61
554657--554841	92	2.0	91	85	7	248	32	14	25	27	1.94
555273--555830	79	7.1	79	88	5	812	36	11	22	29	1.89
555273--555828	154	3.6	158	88	5	810	36	11	22	29	1.90
555273--555829	233	2.4	237	89	4	828	36	11	22	29	1.89
555855--555978	59	2.1	58	88	7	180	36	12	18	33	1.88
556306--556508	81	2.5	80	89	3	304	37	9	22	30	1.85
556306--556541	81	2.9	81	85	5	266	38	9	21	30	1.86
556612--556651	2	20.0	2	100	0	80	50	0	0	50	1.00
571470--571542	10	7.0	10	70	20	51	20	20	2	56	1.55
572093--572149	20	2.8	20	97	0	105	28	21	21	29	1.98
578914--579037	22	5.7	22	90	2	198	24	25	25	24	2.00
578914--579035	43	2.8	43	90	2	192	23	26	25	24	2.00
582618--582667	19	2.6	19	100	0	100	26	22	22	30	1.99
584602--584643	17	2.3	19	84	8	52	42	2	0	54	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585516--585577	27	2.3	27	77	0	70	33	27	8	30	1.86
595558--595596	19	2.1	19	86	13	55	58	0	5	35	1.20
596216--596284	23	3.0	23	79	6	77	53	11	20	14	1.71
599308--599611	37	8.1	37	79	11	296	46	1	6	45	1.40
599373--599443	11	6.1	11	75	18	72	43	0	8	47	1.33
599384--599498	28	4.5	26	80	17	150	45	0	7	46	1.38
599308--599611	114	2.7	111	83	8	389	46	1	6	45	1.40
599421--599634	103	2.1	102	84	6	272	45	1	6	46	1.37
599498--599653	26	6.0	25	71	20	83	45	1	5	48	1.33
599572--599647	26	2.9	27	80	9	86	47	1	3	47	1.29
599318--599611	76	3.9	75	79	9	310	45	1	6	45	1.40
601482--601544	20	2.8	24	70	25	73	28	20	22	28	1.98
601464--601562	44	2.2	44	85	3	128	32	20	19	28	1.97
601662--601707	18	2.5	19	82	10	60	28	6	32	32	1.83
601835--601876	20	2.1	20	82	8	50	38	2	14	45	1.58
602307--602340	16	2.2	16	89	5	52	61	26	0	11	1.30
604098--604170	21	3.5	21	70	10	69	39	19	9	31	1.84
604140--604226	20	4.2	20	77	12	68	33	18	17	31	1.94
604167--604232	20	3.2	20	78	16	80	28	16	22	31	1.96
619865--619896	15	2.1	15	94	0	55	68	9	3	18	1.30
622296--622335	21	1.9	21	90	10	64	55	5	7	32	1.50
626102--626158	22	2.5	23	77	5	62	19	33	21	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628426--628486	22	2.7	23	87	7	90	34	0	37	27	1.57
630923--630966	9	4.9	9	81	18	56	18	2	0	79	0.83
630921--630966	18	2.5	19	82	10	69	19	2	0	78	0.86
630929--630962	17	1.9	18	94	5	61	17	2	0	79	0.86
630925--630983	21	2.8	22	80	14	63	20	1	1	76	0.96
637206--637255	23	2.2	23	88	0	73	40	6	22	32	1.78
637169--637331	87	1.9	87	98	0	317	40	11	15	31	1.84
637349--638031	197	3.4	199	82	7	797	29	15	14	39	1.88
642389--642469	23	3.6	23	76	8	78	24	23	25	25	2.00
646714--646754	17	2.4	17	95	0	73	12	36	12	39	1.80
647849--647887	16	2.4	16	95	0	69	53	15	5	25	1.62
648310--648468	65	2.5	64	82	9	173	29	16	22	31	1.96
651178--651213	18	2.0	18	100	0	72	33	33	16	16	1.92
651680--652395	182	4.0	182	84	6	908	27	17	14	39	1.89
651870--652400	172	3.0	171	82	8	636	27	17	14	40	1.89
652042--652395	183	1.9	182	86	5	500	28	18	14	38	1.89
653389--653460	35	2.1	35	91	0	117	38	15	12	33	1.85
658498--658539	15	2.7	16	78	14	52	35	0	0	64	0.94
662204--662252	16	3.0	16	75	3	53	65	2	0	32	1.04
671028--671091	32	2.0	32	90	0	101	32	6	20	40	1.77
674054--674083	11	2.7	11	89	0	51	56	30	3	10	1.48
674684--674744	3	20.0	3	93	3	104	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675009--675418	133	3.1	133	89	1	574	33	15	20	29	1.94
676756--676834	9	8.4	9	80	8	77	10	8	0	81	0.89
676735--676833	9	11.9	8	74	15	69	14	7	0	78	0.94
676735--676834	15	7.0	14	72	15	64	14	7	0	79	0.93
676756--676873	18	6.2	18	78	13	87	8	11	0	79	0.93
676819--676858	6	6.5	6	83	16	55	2	15	0	82	0.77
677914--677963	16	3.1	16	97	0	91	12	48	6	34	1.65
678513--679328	408	2.0	408	96	0	1492	34	20	15	29	1.94
687947--687986	21	2.0	20	85	14	55	42	15	12	30	1.83
690230--690255	12	2.2	12	100	0	52	42	0	15	42	1.47
716787--716853	3	21.0	3	93	3	89	67	0	0	32	0.91
720558--720601	12	3.2	14	78	15	56	47	27	15	9	1.76
720624--720806	43	4.3	43	73	12	110	32	20	20	26	1.97
721225--721298	21	3.4	21	84	3	94	0	40	18	40	1.51
730872--731027	40	3.9	41	83	8	200	30	19	15	35	1.92
730872--731044	79	2.2	78	83	7	215	31	19	15	33	1.93
731052--731203	42	3.7	41	73	14	116	25	21	19	33	1.97
751124--751156	2	17.0	2	87	6	50	48	3	0	48	1.17
753451--753491	21	2.0	21	90	9	66	68	4	12	14	1.36
767975--768177	100	2.1	98	82	3	237	39	13	12	34	1.83
771164--771227	20	3.2	20	93	0	101	14	18	17	50	1.79
772907--773046	63	2.2	62	82	7	167	21	13	33	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773352--773458	21	5.1	21	82	8	128	21	39	18	20	1.93
773343--773458	42	2.8	42	91	0	178	21	37	17	23	1.93
774829--774979	62	2.4	63	94	1	259	29	2	17	50	1.59
775030--775076	20	2.3	20	75	13	51	42	19	14	23	1.88
775110--775193	34	2.5	34	80	0	96	30	22	17	28	1.97
778761--778874	20	5.7	20	93	3	140	35	9	20	35	1.85
778881--778929	20	2.4	21	89	3	73	20	16	22	40	1.91
778932--778976	20	2.2	20	92	0	72	28	8	33	28	1.87
778939--778978	20	2.0	20	100	0	80	25	10	35	30	1.88
778943--778987	20	2.2	20	84	7	56	24	13	31	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19