genome.fa.s8531.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008531.1 Hibiscus syriacus cultivar Beakdansim tig00111409_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3817888

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  7  of  19  ( 2279 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1326242--1326387	19	8.4	19	73	22	151	46	18	21	13	1.83
1326228--1326409	52	3.6	52	79	15	220	45	18	22	13	1.84
1326434--1326531	19	5.4	19	79	13	125	14	20	18	46	1.83
1326416--1326531	53	2.2	53	93	1	207	13	22	18	44	1.85
1326496--1326539	19	2.3	19	92	0	70	18	20	15	45	1.85
1326638--1326674	14	2.6	14	91	0	65	45	21	0	32	1.52
1328655--1328711	14	3.7	14	77	20	60	45	22	21	10	1.82
1328636--1328728	33	2.8	33	95	0	168	47	21	20	10	1.80
1328599--1328733	19	7.6	19	76	16	128	45	23	19	11	1.82
1328729--1328876	19	8.3	19	78	15	163	8	16	29	45	1.76
1328729--1328859	33	3.8	32	86	9	172	6	17	29	46	1.74
1328924--1329299	93	4.1	93	98	0	727	46	19	12	22	1.83
1331000--1331096	20	5.2	20	70	18	91	46	17	23	12	1.82
1331047--1331103	14	3.7	14	75	20	60	43	22	24	8	1.81
1330998--1331120	33	3.5	33	88	10	165	46	18	23	11	1.81
1331137--1331193	14	3.7	14	75	20	60	8	24	22	43	1.81
1331121--1331201	33	2.5	33	95	0	144	8	22	22	46	1.78
1331178--1331253	21	3.7	21	83	3	109	11	25	17	46	1.82
1331177--1331254	41	1.9	41	97	0	147	12	25	16	44	1.83
1331333--1331403	33	2.2	33	92	0	115	47	18	22	11	1.80
1331585--1331639	22	2.5	22	81	0	74	20	16	40	23	1.91
1331793--1331952	60	2.7	60	83	1	212	20	19	25	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1331793--1331940	20	7.3	20	81	4	190	22	19	24	33	1.97
1331969--1332019	21	2.4	21	80	0	57	25	15	21	37	1.93
1337752--1337785	17	2.0	17	94	0	59	38	17	20	23	1.93
1342983--1343079	49	2.0	49	85	4	133	39	11	13	36	1.81
1343155--1343504	138	2.5	139	85	6	444	44	15	14	26	1.85
1343753--1343849	43	2.2	44	80	5	99	50	3	17	28	1.61
1343950--1343992	22	2.0	22	90	9	70	39	0	27	32	1.57
1353996--1354113	47	2.6	44	83	4	137	30	19	20	29	1.97
1353984--1354154	44	3.8	44	75	7	139	32	16	19	32	1.94
1354081--1354177	44	2.2	45	83	3	117	29	12	19	38	1.88
1354329--1354418	42	2.2	41	82	11	112	34	22	16	26	1.95
1354338--1354417	42	2.0	40	87	5	115	33	23	17	25	1.96
1356403--1356446	21	2.1	21	91	0	70	29	20	22	27	1.99
1360235--1360299	21	3.1	21	93	0	112	27	23	24	24	2.00
1360577--1360617	20	2.0	20	95	0	73	26	14	26	31	1.95
1360663--1360695	16	2.1	16	88	11	50	36	9	0	54	1.32
1361548--1361580	17	1.9	17	93	0	57	33	9	12	45	1.73
1367361--1367394	16	2.1	15	89	10	50	50	14	0	35	1.44
1369201--1369247	19	2.6	18	83	12	60	65	0	14	19	1.26
1369658--1369708	19	2.6	20	90	3	77	43	5	15	35	1.71
1377065--1377150	21	4.0	21	75	11	77	22	37	25	15	1.93
1382603--1382657	23	2.7	18	75	24	56	3	14	5	76	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1382614--1382664	20	2.7	19	77	17	52	3	11	7	76	1.13
1382618--1382664	19	2.5	19	76	13	51	4	10	8	76	1.13
1383339--1383419	22	3.6	22	96	1	144	24	29	27	18	1.98
1383353--1383415	10	5.5	13	65	27	52	26	26	26	19	1.99
1383630--1383706	30	2.5	30	91	2	118	31	23	5	40	1.76
1383720--1383791	29	2.5	29	90	0	108	37	13	9	38	1.78
1384093--1384243	67	2.3	67	90	2	232	17	25	27	28	1.98
1384223--1384265	21	2.0	21	86	0	59	16	25	27	30	1.97
1390305--1390385	22	3.6	22	96	1	144	24	29	27	18	1.98
1390319--1390381	10	5.5	13	65	27	52	26	26	26	19	1.99
1390596--1390672	30	2.5	30	91	2	118	31	23	5	40	1.76
1390686--1390757	29	2.5	29	90	0	108	37	13	9	38	1.78
1391075--1391209	66	2.1	65	88	1	198	19	25	25	29	1.98
1391075--1391234	66	2.4	64	81	9	178	19	26	25	29	1.98
1392106--1392152	19	2.6	18	83	12	60	65	0	14	19	1.26
1392562--1392612	19	2.6	20	90	3	77	43	5	15	35	1.71
1398939--1399095	79	2.0	79	98	0	305	29	20	11	38	1.87
1412539--1413057	46	11.3	46	92	1	790	46	10	22	20	1.81
1413389--1413561	81	2.1	81	83	2	222	36	11	21	30	1.89
1418276--1418662	46	8.3	46	89	4	578	46	10	22	19	1.80
1418276--1418662	26	16.5	25	71	20	286	46	10	22	19	1.80
1418574--1418650	20	3.5	20	76	19	82	44	9	27	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1418997--1419164	81	2.1	80	89	1	255	34	12	22	30	1.91
1423511--1423912	41	9.8	41	69	16	215	30	19	19	31	1.96
1423544--1423862	163	1.9	165	86	3	448	29	18	19	31	1.96
1423516--1423912	83	4.8	81	82	6	442	30	19	19	30	1.96
1423516--1423955	82	5.3	80	81	6	402	29	19	19	31	1.96
1426792--1426832	21	2.0	21	90	0	64	19	2	24	53	1.57
1427001--1427271	43	6.3	43	88	3	287	30	24	20	23	1.98
1427036--1427296	129	2.0	129	88	2	382	29	24	20	25	1.99
1427035--1427292	43	6.0	42	90	3	345	29	24	20	24	1.99
1426980--1427292	86	3.6	86	86	0	385	28	24	20	26	1.99
1427633--1427695	32	2.0	32	96	0	117	50	17	6	25	1.69
1427819--1428000	31	5.3	36	65	18	118	46	13	14	26	1.81
1427777--1428049	68	4.0	68	91	2	444	46	12	12	28	1.78
1427793--1428041	135	1.8	135	95	0	453	47	12	12	27	1.77
1440375--1440434	31	1.9	31	93	0	102	40	6	8	45	1.61
1440459--1440501	22	2.0	22	95	0	77	48	13	2	34	1.56
1440463--1440510	22	2.4	20	80	16	55	52	14	2	31	1.54
1440449--1442354	54	35.3	54	75	14	810	51	13	0	34	1.43
1440561--1440651	32	2.8	32	93	0	146	52	10	1	35	1.44
1440627--1440701	22	3.2	23	73	14	80	57	14	0	28	1.38
1440673--1442316	32	58.7	32	67	28	786	51	13	0	34	1.43
1440696--1440748	14	3.5	14	72	18	52	56	5	0	37	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1440678--1440734	18	3.4	18	69	18	59	54	12	0	33	1.38
1440816--1440882	22	3.0	23	71	8	75	52	17	0	29	1.45
1440821--1440890	22	3.2	22	69	18	65	54	17	0	28	1.43
1440893--1440935	22	2.0	22	95	0	77	48	13	0	37	1.43
1440705--1442354	86	20.5	76	76	15	869	51	13	0	34	1.43
1440895--1440943	22	2.2	22	85	3	62	53	14	0	32	1.41
1440947--1440989	22	2.0	22	100	0	86	51	13	0	34	1.42
1440949--1440997	22	2.2	22	88	3	71	55	14	0	30	1.40
1441033--1441075	22	2.0	22	100	0	86	51	13	0	34	1.42
1441035--1441083	22	2.2	22	88	3	71	55	14	0	30	1.40
1441087--1441129	22	2.0	22	95	0	77	51	11	0	37	1.39
1441089--1441137	22	2.2	22	85	3	62	55	12	0	32	1.37
1441141--1441183	22	2.0	22	95	0	77	51	16	0	32	1.45
1441143--1441267	22	5.2	22	73	18	70	52	15	0	32	1.43
1441195--1441259	22	3.0	22	97	0	121	50	15	0	33	1.44
1441374--1441424	22	2.4	21	90	3	75	56	9	0	33	1.32
1441384--1441432	22	2.2	22	85	3	62	57	12	0	30	1.36
1441438--1441512	22	3.2	23	75	17	82	54	17	0	28	1.43
1441518--1441592	22	3.2	23	75	17	82	54	17	0	28	1.43
1441596--1441638	22	2.0	22	100	0	86	51	13	0	34	1.42
1441598--1441646	22	2.2	22	88	3	71	55	14	0	30	1.40
1441650--1441692	22	2.0	22	100	0	86	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1441652--1441700	22	2.2	22	88	3	71	55	14	0	30	1.40
1441736--1441778	22	2.0	22	100	0	86	51	13	0	34	1.42
1441738--1441786	22	2.2	22	88	3	71	55	14	0	30	1.40
1441790--1441832	22	2.0	22	95	0	77	51	11	0	37	1.39
1441792--1441840	22	2.2	22	85	3	62	55	12	0	32	1.37
1441844--1441886	22	2.0	22	95	0	77	51	16	0	32	1.45
1441897--1441937	21	2.0	21	95	0	73	51	14	0	34	1.43
1441949--1441991	22	2.0	22	100	0	86	51	13	0	34	1.42
1441951--1441999	22	2.2	22	88	3	71	55	14	0	30	1.40
1442103--1442153	22	2.4	21	90	3	75	56	9	0	33	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19