genome.fa.s8654.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008654.1 Hibiscus syriacus cultivar Beakdansim tig00111648_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3533819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  2  of  18  ( 2052 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205480--205544	9	6.9	9	80	15	69	56	1	1	40	1.18
205868--206544	123	5.7	122	87	6	748	28	19	14	38	1.90
205884--206559	247	2.9	233	82	9	760	27	19	14	38	1.90
206252--206559	112	2.8	111	91	3	505	28	19	13	37	1.90
206568--206821	76	3.4	75	91	2	386	33	21	20	25	1.97
207482--207596	22	5.5	22	81	12	161	38	14	13	33	1.85
207482--207596	43	2.8	41	87	12	157	38	14	13	33	1.85
211814--211847	7	5.0	7	85	7	52	0	11	0	88	0.52
211811--211845	13	2.7	13	90	0	61	0	8	0	91	0.42
212141--212207	2	33.5	2	96	0	125	50	0	1	47	1.10
213876--213917	7	6.0	7	78	10	50	54	14	16	14	1.71
215402--215453	18	3.3	15	78	17	52	67	1	3	26	1.18
222700--222739	21	1.9	21	89	0	62	25	40	25	10	1.86
226165--226243	3	26.7	3	74	7	63	59	1	1	37	1.14
231230--231272	21	2.0	21	81	9	50	27	0	4	67	1.10
236376--236419	2	22.0	2	90	0	70	50	4	0	45	1.22
236501--236584	41	2.0	41	86	0	114	32	19	17	30	1.95
238565--238618	21	2.5	21	93	3	90	18	14	24	42	1.88
240991--241044	28	1.9	28	81	7	65	53	11	9	25	1.66
244597--244685	40	2.2	40	84	6	108	31	8	16	42	1.79
244537--244815	101	2.7	100	86	4	378	28	9	17	45	1.79
244680--244864	20	9.1	20	65	12	63	28	7	15	49	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
244698--244789	42	2.2	42	92	1	150	30	8	17	43	1.79
244597--244946	143	2.5	143	82	5	415	30	8	15	46	1.74
244785--244863	40	2.0	40	87	0	113	27	6	12	53	1.63
244841--244947	42	2.6	42	79	5	130	31	8	11	48	1.69
244694--245008	143	2.2	142	83	6	377	29	8	13	48	1.73
244986--245025	20	2.0	21	90	5	64	22	7	15	55	1.65
244882--245069	62	3.0	62	84	3	254	29	10	11	47	1.74
245005--245095	42	2.2	41	84	2	119	30	9	13	46	1.75
247083--247116	18	1.9	17	88	5	50	8	29	0	61	1.26
248543--248598	15	3.7	15	74	9	60	58	8	7	25	1.53
250378--250479	46	2.2	46	84	3	125	30	24	8	36	1.86
250566--250727	40	4.1	40	94	0	279	33	25	16	24	1.96
262049--262115	34	1.9	36	87	6	102	50	5	1	41	1.36
263318--263381	3	22.0	3	81	12	71	62	0	0	37	0.95
263343--263394	17	3.2	17	91	5	81	75	0	0	25	0.81
263624--263930	123	2.5	123	87	1	427	27	19	14	38	1.91
263896--263956	26	2.3	26	94	0	113	19	24	8	47	1.76
263772--264080	150	2.1	150	90	1	494	23	20	15	40	1.90
263922--264366	124	3.6	124	94	0	766	24	19	15	39	1.91
263649--264204	274	2.0	273	89	3	861	24	20	15	39	1.91
267203--267273	2	37.0	2	91	8	121	47	0	0	52	1.00
267203--267275	21	3.7	21	91	8	102	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267313--267363	26	1.9	27	88	4	77	33	5	7	52	1.54
269331--269438	55	2.0	55	83	7	139	45	10	20	24	1.82
272728--272813	1	86.0	1	88	0	127	94	0	5	0	0.32
272717--272817	8	12.6	8	87	8	109	91	0	8	0	0.43
272719--272813	18	5.2	18	91	7	140	92	0	7	0	0.38
272717--272822	38	2.8	38	86	8	146	89	0	9	0	0.53
272719--272817	49	2.0	50	94	2	173	91	0	8	0	0.41
275666--275770	20	5.2	20	60	24	51	31	13	8	46	1.73
275800--275868	23	3.3	23	62	29	62	31	13	14	40	1.84
275920--275988	23	3.3	23	63	23	60	30	15	15	37	1.90
275626--275995	40	9.2	40	93	0	614	30	15	11	42	1.81
275652--276104	40	11.5	37	85	5	171	31	16	11	39	1.85
276577--277145	136	4.2	136	93	0	901	34	18	21	26	1.96
277955--278001	19	2.4	20	73	16	53	23	4	8	63	1.40
278077--278121	23	1.9	24	82	13	58	31	2	8	57	1.41
278488--278695	103	2.0	103	99	0	407	33	10	10	45	1.73
283964--283995	15	2.1	15	100	0	64	50	6	18	25	1.70
289506--289570	3	22.0	3	84	9	80	61	0	0	38	0.96
300739--300807	30	2.3	29	85	9	86	33	24	27	14	1.94
301157--301334	69	2.6	70	93	1	322	16	15	16	51	1.77
301774--301832	30	2.0	30	83	6	75	30	3	11	54	1.53
302309--302338	14	2.1	14	93	0	51	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302341--302394	2	27.0	2	100	0	108	50	0	0	50	1.00
302974--303370	142	3.0	142	88	11	552	30	12	10	47	1.74
312189--312214	5	5.2	5	100	0	52	38	19	0	42	1.51
317627--317861	103	2.3	103	82	5	271	31	11	23	34	1.90
321611--321845	103	2.3	103	82	3	278	31	11	22	34	1.89
332275--332351	14	5.6	14	70	3	66	27	16	28	27	1.97
332275--332352	27	2.8	28	83	9	97	28	16	28	26	1.97
337002--337029	12	2.3	12	100	0	56	78	7	7	7	1.09
346235--346284	20	2.5	20	90	0	73	48	2	0	50	1.12
349669--349717	26	1.9	25	87	4	71	59	2	2	36	1.21
351320--351365	24	1.9	24	86	8	67	41	6	6	45	1.56
354841--354874	6	5.5	6	89	3	50	50	0	32	17	1.47
358333--358409	24	3.2	24	73	12	70	41	1	1	55	1.16
360832--360909	37	2.1	37	83	4	95	44	1	2	51	1.23
363100--363126	10	2.7	10	100	0	54	18	0	0	81	0.69
363405--363447	3	14.7	3	90	4	70	72	0	0	27	0.85
363409--363444	17	2.1	17	100	0	72	72	0	0	27	0.85
363404--363447	23	1.9	23	95	0	79	72	0	0	27	0.85
364028--364107	41	2.0	41	82	5	99	26	25	22	26	2.00
363912--364325	218	1.9	214	85	3	562	34	17	15	32	1.91
364277--364352	21	3.7	21	73	19	79	35	17	15	31	1.91
364269--364363	41	2.3	41	100	0	190	34	20	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364253--364363	20	5.4	20	69	19	77	32	20	20	26	1.97
364581--364749	42	4.1	42	72	6	141	34	21	16	27	1.95
364576--364749	83	2.1	81	84	2	240	35	20	17	27	1.95
367171--367249	21	3.8	20	75	22	74	1	22	0	75	0.87
367178--367240	14	4.6	14	73	11	60	1	23	0	74	0.90
367175--367268	16	5.9	16	78	12	88	1	21	1	76	0.91
367169--367290	6	20.7	6	74	13	69	2	22	0	74	0.99
367175--367249	27	2.9	26	80	9	82	1	22	0	76	0.87
367173--367266	20	4.6	21	74	10	79	1	21	1	76	0.91
367207--367286	32	2.4	35	81	12	96	2	20	1	76	0.97
367199--367262	27	2.4	27	86	5	85	1	18	1	78	0.92
368256--368281	13	2.0	13	100	0	52	46	15	0	38	1.46
370137--370209	30	2.4	30	95	0	128	30	24	20	24	1.99
370195--370259	31	2.1	31	85	0	85	33	23	18	24	1.96
371190--371247	20	2.6	22	89	10	84	25	22	20	31	1.98
371236--371396	64	2.5	64	83	7	186	29	23	14	31	1.95
371853--371908	3	18.7	3	100	0	112	66	0	33	0	0.92
378784--378892	6	18.7	6	79	14	95	76	0	3	20	0.94
378785--378863	40	2.0	40	90	5	124	79	0	5	15	0.89
378806--378892	35	2.5	35	87	5	108	74	0	2	22	0.93
379975--380042	2	34.5	2	97	2	129	48	0	0	51	1.00
380839--380900	14	4.4	14	73	4	52	50	6	1	41	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383193--383244	21	2.5	21	81	3	61	38	19	25	17	1.93
383230--383361	41	3.2	41	76	6	124	35	25	15	23	1.94
383233--383347	20	5.7	20	80	6	106	32	26	17	24	1.97
383533--383575	21	2.0	21	90	0	68	20	41	16	20	1.90
385188--385232	18	2.5	18	88	0	72	26	44	15	13	1.83
385714--385759	20	2.3	20	84	0	56	36	23	21	17	1.94
385725--385769	20	2.3	20	88	3	74	37	17	24	20	1.93
385733--385778	19	2.3	20	85	3	58	39	19	23	17	1.92
385793--385838	20	2.3	20	92	0	74	15	23	26	34	1.94
387706--387741	14	2.6	14	90	0	54	30	0	22	47	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18