genome.fa.s8654.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008654.1 Hibiscus syriacus cultivar Beakdansim tig00111648_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3533819

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  4  of  18  ( 2052 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633264--633321	26	2.2	26	81	6	73	74	1	12	12	1.16
633856--633894	3	13.3	3	94	5	71	66	0	0	33	0.92
633860--633897	17	2.2	17	100	0	76	65	0	0	34	0.93
633857--633894	20	1.9	20	100	0	76	65	0	0	34	0.93
633840--633924	26	3.1	25	76	18	64	67	2	2	28	1.16
633927--634113	38	4.9	37	91	8	297	43	8	5	43	1.56
633906--634113	38	5.6	37	87	9	282	44	7	4	43	1.53
633906--634113	75	2.8	74	88	10	300	44	7	4	43	1.53
633927--634154	77	3.0	73	86	8	269	43	9	5	42	1.59
634164--634189	5	5.2	5	100	0	52	80	0	0	19	0.71
635005--635070	21	3.4	21	70	25	72	40	12	21	25	1.88
634986--635113	37	3.5	37	88	2	195	42	14	17	25	1.87
634740--635487	374	2.0	374	97	0	1408	33	15	21	29	1.94
635360--635864	36	14.1	36	75	13	436	41	14	17	26	1.88
635302--635639	174	1.9	177	90	4	542	42	14	18	24	1.88
635554--635618	21	3.4	21	68	24	70	41	12	21	24	1.87
635561--635681	42	3.0	42	89	7	173	45	14	18	22	1.84
635360--635855	216	2.3	216	90	3	754	42	14	17	25	1.88
635750--635810	15	3.7	15	73	23	50	34	13	22	29	1.92
637107--637292	95	2.0	95	89	4	286	31	19	15	32	1.93
646578--646620	16	2.7	16	92	0	68	65	4	11	18	1.42
646574--646631	16	3.6	16	81	6	55	68	3	8	18	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646595--646643	26	1.9	25	84	12	64	73	2	2	22	1.04
646646--646902	77	3.3	76	78	11	240	43	7	5	43	1.55
646672--646899	38	5.9	38	82	10	243	42	7	5	43	1.57
646672--646875	75	2.6	77	82	9	247	43	7	5	44	1.55
651863--651887	12	2.1	12	100	0	50	8	8	20	64	1.46
652339--652506	90	1.9	89	93	1	291	38	9	7	44	1.64
659039--659215	90	2.0	89	93	1	300	37	11	6	44	1.67
664312--664402	22	4.0	22	76	12	69	51	1	2	45	1.20
664315--664368	24	2.5	21	75	18	56	55	1	3	38	1.28
664315--664402	23	3.9	22	75	16	58	51	1	2	45	1.21
664360--664403	23	1.9	23	86	9	63	47	0	0	52	1.00
664366--664452	45	1.9	46	81	11	108	45	1	0	52	1.08
664431--664491	13	4.8	12	75	15	59	32	1	1	63	1.13
666607--666654	13	3.7	13	76	20	55	33	0	0	66	0.92
666607--666642	15	2.5	15	91	8	58	36	0	0	63	0.94
667914--668003	31	2.9	31	93	0	144	33	10	15	41	1.81
668366--668549	43	4.2	43	79	8	187	46	7	23	22	1.76
668382--668553	86	2.0	87	83	8	217	44	8	24	23	1.80
668382--668553	44	4.0	44	82	5	190	44	8	24	23	1.80
671538--671562	7	3.6	7	100	0	50	16	12	32	40	1.84
675750--675882	60	2.2	58	77	13	135	32	21	6	40	1.77
676013--676178	60	2.8	58	79	5	163	48	4	13	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676611--676638	3	9.3	3	100	0	56	67	0	0	32	0.91
677201--677271	31	2.3	31	97	0	133	40	11	18	29	1.85
680771--681008	42	5.7	42	71	10	193	34	18	22	24	1.96
680831--680970	41	3.4	41	78	11	169	35	19	22	22	1.96
680788--681008	82	2.7	83	89	0	336	34	18	22	23	1.96
681037--681278	41	5.9	41	88	1	353	33	14	19	31	1.93
681961--682041	41	2.0	41	87	4	119	33	17	18	30	1.94
682280--682322	18	2.4	18	84	0	59	27	46	11	13	1.78
683228--683301	35	2.1	36	94	5	132	41	6	8	43	1.61
684733--684775	21	1.9	23	86	13	63	39	16	37	6	1.75
684783--684835	21	2.5	21	90	0	79	43	16	35	3	1.67
685259--685514	43	5.9	44	75	5	191	34	25	15	24	1.95
699180--699212	2	17.0	2	87	6	50	45	0	3	51	1.16
699206--699254	25	2.0	25	100	0	98	30	0	20	48	1.50
712853--713039	21	9.1	21	65	4	112	20	18	24	36	1.95
712857--713039	41	4.5	41	91	0	303	20	19	24	36	1.95
712886--713036	20	7.4	20	65	4	95	19	20	23	36	1.95
713028--713080	22	2.4	22	93	0	97	16	16	28	37	1.91
713684--713715	6	5.3	6	100	0	64	0	18	46	34	1.49
713831--714006	41	4.3	41	98	0	325	32	22	21	23	1.98
713854--713920	21	3.2	21	61	4	55	26	23	20	28	1.99
713913--714110	104	1.9	104	94	0	351	35	24	19	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714017--714117	41	2.5	41	100	0	202	36	24	19	18	1.95
714523--714565	3	14.3	3	80	0	50	62	0	0	37	0.95
714507--714565	21	2.8	21	85	10	68	62	0	1	35	1.05
714529--714576	21	2.3	21	92	0	78	60	0	0	39	0.97
714624--714792	84	2.0	84	92	0	284	47	13	15	23	1.81
714784--714825	18	2.3	19	91	4	68	61	9	4	23	1.45
716188--716252	3	21.7	3	96	0	121	33	1	0	64	1.03
716251--716285	14	2.4	15	95	4	63	62	0	0	37	0.95
716468--716506	15	2.6	15	100	0	78	20	28	28	23	1.99
729058--729105	6	7.7	6	82	17	62	81	0	18	0	0.70
729053--729104	21	2.5	20	84	9	68	82	0	17	0	0.66
729052--729107	27	2.1	27	87	12	80	78	0	21	0	0.75
730216--730624	83	5.0	83	96	2	727	28	13	21	37	1.91
730216--730624	164	2.5	166	95	2	727	28	13	21	37	1.91
731370--732240	113	7.8	112	78	10	770	37	13	19	29	1.90
731370--732239	226	3.9	225	79	11	962	37	13	19	29	1.90
731660--731852	94	2.1	93	85	3	253	38	16	17	27	1.91
731546--731955	212	2.0	206	85	3	561	36	14	18	29	1.91
731811--732240	116	3.7	115	87	3	576	38	12	20	28	1.88
731752--732254	116	4.3	114	82	9	497	37	14	18	29	1.90
732464--732510	3	15.7	3	95	0	85	34	2	0	63	1.06
732509--732543	14	2.4	15	95	4	63	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732946--732986	19	2.2	19	86	8	57	68	7	24	0	1.15
732946--733019	16	4.8	16	72	11	64	70	8	21	0	1.13
734622--734682	2	31.5	2	85	6	72	42	3	1	52	1.27
737958--737995	19	2.1	19	90	5	60	13	21	36	28	1.91
741403--741750	130	2.7	131	87	2	520	40	17	11	31	1.85
743496--743537	22	1.9	22	95	0	75	4	11	38	45	1.62
743834--744192	133	2.7	135	85	2	490	30	15	22	31	1.94
745615--745753	66	2.1	66	97	0	260	29	21	5	43	1.76
747983--748022	21	1.9	21	89	0	62	10	25	40	25	1.86
748003--748065	20	2.9	21	79	9	65	15	25	34	23	1.95
754059--754090	10	3.2	10	95	0	55	3	6	0	90	0.53
766703--766746	23	1.9	23	86	9	63	6	11	36	45	1.67
766839--766901	3	21.3	3	77	3	56	58	3	1	36	1.23
766845--766902	21	2.8	21	84	2	73	55	3	3	37	1.34
766981--767116	35	3.9	35	86	5	163	30	20	19	28	1.97
769897--770930	137	7.5	138	84	3	1282	32	21	20	24	1.97
769897--770976	280	3.9	279	83	4	1305	33	21	20	24	1.97
774334--774368	14	2.6	14	95	4	63	40	40	0	20	1.52
781026--781089	26	2.4	26	82	12	69	9	28	0	62	1.26
786400--786450	19	2.6	20	87	9	70	50	3	13	31	1.60
789042--789229	60	3.1	61	80	9	201	43	5	19	31	1.73
789119--789211	29	3.1	29	66	19	66	46	5	17	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791473--791659	11	15.0	11	66	26	58	48	8	2	41	1.46
791463--791672	65	3.3	63	81	10	209	48	8	3	40	1.49
791818--791860	16	2.6	18	78	17	56	67	0	2	30	1.03
791818--791859	11	3.8	11	84	9	59	69	0	2	28	1.01
795706--795771	27	2.4	27	84	0	96	24	33	16	25	1.96
799484--799513	9	3.2	9	95	4	51	40	13	0	46	1.43
800623--800653	16	1.9	16	93	0	53	48	25	12	12	1.77
802591--802640	21	2.4	21	82	0	64	44	30	0	26	1.55
802589--802642	14	3.9	14	80	20	53	44	27	0	27	1.55
802607--802746	28	5.0	28	76	10	115	50	27	0	22	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18