genome.fa.s8656.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008656.1 Hibiscus syriacus cultivar Beakdansim tig00111650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2456495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  11  of  12  ( 1378 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2245888--2245980	18	5.1	17	71	15	69	58	3	4	34	1.34
2249633--2249660	11	2.5	11	100	0	56	39	35	0	25	1.56
2254039--2254063	7	3.6	7	100	0	50	56	0	0	44	0.99
2258647--2258760	48	2.4	48	86	0	165	22	10	30	35	1.88
2258647--2258779	48	2.8	47	80	4	149	22	9	30	36	1.87
2259104--2259133	2	15.0	2	100	0	60	50	0	0	50	1.00
2260036--2260098	23	2.8	22	74	11	65	4	22	0	73	1.02
2266542--2266577	10	3.7	10	96	3	65	30	33	11	25	1.90
2266926--2266972	20	2.3	20	100	0	94	44	10	21	23	1.83
2270905--2270941	19	1.9	19	88	0	56	35	16	8	40	1.78
2277810--2277863	19	2.6	21	77	8	58	31	16	20	31	1.95
2277810--2277869	22	2.9	22	78	7	63	30	15	23	31	1.95
2278222--2278812	55	10.8	54	86	2	749	35	17	18	28	1.94
2278218--2278812	110	5.4	110	88	1	865	35	17	18	28	1.94
2278222--2278812	165	3.6	165	88	1	846	35	17	18	28	1.94
2279002--2279199	68	2.9	68	91	0	315	30	13	25	30	1.94
2279220--2279315	46	2.1	46	86	0	129	46	8	20	23	1.78
2279288--2279410	45	2.7	45	78	6	131	40	9	21	28	1.85
2283163--2283246	35	2.4	35	93	0	141	41	20	16	21	1.90
2283632--2284183	55	10.1	54	87	2	741	34	17	20	27	1.95
2283632--2284174	219	2.5	220	90	2	835	34	17	20	27	1.95
2284350--2284553	67	3.0	68	86	2	286	29	15	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2284574--2284715	46	3.1	46	87	0	203	47	7	19	24	1.75
2284688--2284822	45	3.0	44	81	5	146	37	11	22	27	1.89
2286524--2286790	133	2.0	134	84	6	355	41	15	12	29	1.84
2286566--2286909	139	2.5	138	81	6	326	43	14	12	28	1.83
2288605--2288663	19	3.1	19	85	2	73	27	0	3	69	1.04
2288605--2288667	22	3.0	22	86	4	76	28	0	3	68	1.05
2288611--2288667	16	3.4	17	77	15	64	31	0	1	66	1.02
2288615--2288667	3	19.0	3	81	14	60	32	0	1	66	1.03
2290121--2290153	16	2.1	16	88	11	50	39	0	0	60	0.97
2290312--2290374	33	2.0	33	84	6	85	41	0	1	57	1.08
2291092--2291135	17	2.6	16	86	10	61	27	2	0	70	0.99
2292625--2292666	7	6.0	7	81	8	50	14	16	14	54	1.71
2292625--2292666	15	3.0	14	83	10	50	14	16	14	54	1.71
2292724--2292775	6	8.7	6	80	0	59	23	17	7	51	1.70
2292724--2292802	24	3.2	24	81	10	95	21	15	7	55	1.64
2292724--2292775	12	4.3	12	97	0	95	23	17	7	51	1.70
2294424--2294459	2	18.0	2	100	0	72	50	0	0	50	1.00
2294746--2294799	26	2.0	27	96	3	101	68	11	16	3	1.33
2294753--2294837	27	3.1	26	80	11	73	76	7	15	1	1.06
2294782--2294837	29	1.9	29	82	13	71	78	5	16	0	0.92
2294816--2294849	6	5.8	6	89	6	52	85	11	2	0	0.71
2294816--2294849	11	2.9	12	86	8	52	85	11	2	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2294817--2294849	17	1.9	17	93	0	57	84	12	3	0	0.72
2297075--2297394	115	2.8	114	92	1	523	34	15	19	30	1.93
2298509--2298681	76	2.3	75	82	2	220	30	14	23	31	1.94
2300018--2300072	22	2.5	22	90	0	92	36	9	14	40	1.78
2300738--2300916	81	2.3	76	86	4	232	28	21	19	30	1.98
2300770--2300924	81	1.9	81	89	0	238	28	20	20	30	1.97
2300935--2301531	113	5.3	113	90	1	912	37	14	19	28	1.91
2301439--2301604	73	2.3	73	91	2	262	31	17	19	31	1.95
2301512--2301735	113	2.0	113	91	1	360	36	15	20	28	1.93
2301329--2301717	186	2.1	185	91	2	629	34	15	18	31	1.92
2301696--2302001	142	2.2	142	98	0	594	38	16	19	25	1.92
2302237--2302295	19	3.1	19	85	2	73	27	0	3	69	1.04
2302237--2302299	22	3.0	22	86	4	76	28	0	3	68	1.05
2302243--2302299	16	3.4	17	77	15	64	31	0	1	66	1.02
2302247--2302299	3	19.0	3	81	14	60	32	0	1	66	1.03
2303755--2303787	16	2.1	16	88	11	50	39	0	0	60	0.97
2304199--2304248	23	2.0	26	85	11	70	46	2	0	52	1.12
2308419--2308723	54	5.6	54	80	6	175	26	21	25	26	2.00
2308481--2308720	112	2.2	109	88	3	347	25	22	26	25	2.00
2308839--2308991	81	1.9	81	94	0	270	32	22	30	15	1.95
2316197--2316229	3	11.0	3	87	12	50	33	0	0	66	0.92
2317419--2317486	30	2.3	30	97	0	127	17	16	17	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2319296--2319332	19	1.9	19	88	0	56	45	5	0	48	1.25
2336207--2336264	2	29.0	2	100	0	116	50	0	0	50	1.00
2337080--2337190	39	2.9	38	89	5	154	40	8	14	36	1.76
2337684--2337742	25	2.4	25	77	5	66	25	1	5	67	1.20
2337749--2337900	4	38.8	4	74	15	61	26	3	1	68	1.13
2337759--2337855	47	2.1	45	81	7	106	31	2	2	63	1.17
2337722--2337855	45	2.9	47	73	13	125	30	2	2	64	1.21
2339489--2339925	218	2.0	218	94	0	759	31	16	24	27	1.96
2343020--2343208	73	2.6	73	96	0	353	26	19	14	39	1.90
2343020--2343208	36	5.2	36	94	1	324	26	19	14	39	1.90
2343226--2343309	36	2.3	36	85	0	114	30	22	10	35	1.88
2343121--2343390	101	2.7	101	91	1	423	26	19	12	41	1.86
2343257--2343487	123	1.9	124	94	2	412	24	18	13	42	1.87
2343358--2343411	21	2.5	22	84	3	65	20	14	14	50	1.78
2343379--2343496	29	3.4	36	68	24	110	25	19	13	41	1.88
2343379--2343534	66	2.3	66	86	8	226	27	18	12	41	1.87
2343379--2343567	67	2.8	66	81	6	222	28	19	11	40	1.87
2343631--2343793	83	2.0	83	90	2	256	33	23	15	27	1.95
2344362--2344473	37	3.0	37	97	0	206	40	14	15	30	1.86
2345008--2345202	19	9.6	19	68	18	83	26	3	2	68	1.17
2345008--2345095	38	2.3	40	80	7	112	30	1	4	63	1.21
2345079--2345109	2	15.5	2	93	0	53	45	0	3	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2345119--2345211	23	4.2	21	73	14	80	17	5	1	76	1.03
2345737--2345848	37	3.0	37	93	0	188	40	14	15	30	1.86
2346389--2346466	40	2.0	40	82	10	97	25	2	2	69	1.14
2346424--2346498	23	3.3	23	74	22	77	20	4	1	74	1.05
2346456--2346533	4	18.8	4	72	12	50	20	3	1	74	1.05
2346401--2346511	45	2.5	43	82	10	125	20	3	1	73	1.07
2346424--2346512	45	2.0	46	88	6	137	20	3	1	75	1.01
2346432--2346483	21	2.4	21	75	12	52	21	1	1	75	1.00
2346434--2346548	13	9.2	12	70	17	67	20	5	0	73	1.08
2346424--2346499	24	3.3	23	73	17	77	19	3	1	75	1.04
2346430--2346529	45	2.2	46	82	8	116	21	4	1	74	1.05
2346493--2346548	26	2.2	25	87	3	76	25	5	0	69	1.09
2346436--2346534	50	2.0	51	84	6	130	19	4	1	75	1.01
2347594--2347654	25	2.5	24	92	7	106	19	39	0	40	1.52
2348121--2348180	6	10.2	6	78	10	52	21	3	1	73	1.07
2349530--2349567	2	19.0	2	100	0	76	50	0	0	50	1.00
2350821--2350874	20	2.7	19	75	8	63	33	31	18	16	1.93
2350924--2351092	20	8.4	20	80	6	173	39	23	18	18	1.93
2350924--2351092	40	4.2	40	90	0	248	39	23	18	18	1.93
2351655--2351705	20	2.5	20	90	0	75	54	21	9	13	1.67
2351698--2351758	14	4.0	14	73	19	50	44	22	22	9	1.82
2351698--2351769	33	2.2	33	92	0	117	44	25	20	9	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2351765--2351829	19	3.7	19	76	19	77	12	23	20	44	1.84
2351770--2351895	33	3.8	33	88	1	171	13	21	19	45	1.85
2353615--2353994	94	4.1	94	96	1	674	21	12	18	47	1.82
2354042--2354183	19	7.7	19	76	14	118	47	23	17	11	1.80
2354042--2354152	36	2.9	38	81	10	127	46	21	18	13	1.83
2354115--2354178	33	1.9	33	90	0	101	50	26	15	7	1.71
2354223--2354274	20	2.6	20	81	0	68	19	21	21	38	1.94
2354757--2354855	21	4.7	21	73	3	83	23	34	20	22	1.97
2354782--2354864	42	2.0	42	83	4	105	22	37	19	20	1.94
2356218--2356253	14	2.6	14	90	0	54	30	0	22	47	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12