genome.fa.s8656.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008656.1 Hibiscus syriacus cultivar Beakdansim tig00111650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2456495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  8  of  12  ( 1378 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1643102--1643164	31	2.0	31	81	6	74	22	7	3	66	1.32
1643188--1643300	20	5.6	19	68	27	56	11	7	5	76	1.15
1643212--1643264	15	3.2	16	89	7	72	13	3	5	77	1.09
1643227--1643286	8	8.0	7	72	20	50	8	1	8	81	0.93
1643246--1643289	22	1.9	24	90	9	74	6	4	6	81	0.97
1643266--1643294	14	2.0	15	93	6	51	6	3	6	82	0.93
1643225--1643304	39	2.0	41	83	13	105	8	5	7	78	1.08
1643220--1643313	19	5.2	18	75	19	63	10	5	6	77	1.11
1643266--1643336	36	2.1	33	84	7	88	12	7	5	74	1.20
1657413--1657539	30	4.4	28	80	14	134	74	1	14	8	1.12
1657413--1657518	7	14.1	8	71	23	63	73	0	15	10	1.14
1657413--1657539	13	8.7	15	77	17	99	74	1	14	8	1.12
1657457--1657538	21	3.8	21	77	13	71	76	1	12	9	1.07
1657427--1657566	44	3.2	44	81	11	155	75	1	15	8	1.11
1657407--1657566	7	21.9	7	68	25	59	74	1	16	8	1.12
1657426--1657543	51	2.4	47	80	17	123	76	1	13	8	1.09
1657418--1657540	58	2.1	59	82	10	146	75	1	14	8	1.10
1657451--1657571	30	4.1	29	77	10	95	76	0	13	9	1.07
1658834--1658911	37	2.1	37	85	0	102	47	16	19	16	1.83
1658911--1659402	55	8.9	55	82	5	523	27	17	25	30	1.97
1658911--1659376	162	2.8	166	83	6	563	27	16	24	31	1.97
1666893--1667183	64	4.5	64	93	0	474	36	21	13	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1667338--1667874	124	4.4	124	85	3	663	33	24	15	25	1.95
1669407--1669454	25	1.9	26	83	8	64	47	0	25	27	1.52
1669759--1669801	20	2.2	20	86	0	59	23	18	32	25	1.97
1670387--1670447	22	2.8	22	92	0	95	31	22	22	22	1.99
1670973--1671068	21	4.5	21	94	2	156	27	20	28	23	1.99
1671841--1671896	25	2.3	23	82	11	67	19	5	1	73	1.12
1671841--1671928	26	3.4	24	74	19	70	21	4	1	72	1.09
1671941--1671975	2	17.5	2	100	0	70	48	0	0	51	1.00
1672080--1672263	67	2.7	67	79	9	178	16	7	3	72	1.20
1672141--1672261	15	8.2	14	73	21	79	17	5	3	73	1.16
1672168--1672234	9	7.4	9	71	24	52	16	7	2	73	1.19
1672141--1672261	5	24.6	5	67	22	62	17	5	3	73	1.16
1673362--1673499	73	1.9	73	92	3	233	27	10	25	36	1.88
1674321--1674351	16	1.9	16	93	0	53	45	12	3	38	1.59
1675087--1675183	27	3.7	26	73	21	87	78	4	9	8	1.08
1675099--1675182	26	3.2	25	76	18	82	77	4	10	7	1.11
1675087--1675183	13	7.2	13	71	18	65	78	4	9	8	1.08
1675086--1675143	29	2.0	29	83	12	75	79	3	8	8	1.04
1675086--1675154	29	2.3	29	78	14	68	78	2	8	10	1.07
1675128--1675176	23	2.1	23	84	3	62	75	8	10	6	1.18
1676565--1676611	16	2.7	18	78	18	55	46	0	8	44	1.33
1676573--1676620	23	2.1	23	84	0	60	47	2	6	43	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1676578--1676627	23	2.2	23	81	0	55	48	6	4	42	1.46
1678342--1678373	15	2.2	15	94	5	57	12	15	0	71	1.14
1686237--1686297	21	2.9	21	95	0	104	22	18	29	29	1.97
1687745--1687783	20	2.0	19	95	5	69	66	5	12	15	1.41
1691352--1691416	22	3.1	19	75	18	58	84	3	6	6	0.85
1691364--1691416	19	2.7	19	85	5	70	83	1	7	7	0.89
1691526--1691577	24	2.2	23	80	12	61	73	1	9	15	1.18
1692732--1692813	13	6.0	13	71	18	60	46	1	4	47	1.31
1694156--1694194	14	2.7	14	84	4	51	48	5	15	30	1.66
1696603--1696664	26	2.4	26	97	0	115	16	30	0	53	1.43
1697590--1697623	16	2.1	16	94	0	59	41	8	11	38	1.73
1697870--1697995	67	1.9	67	94	1	225	27	3	16	51	1.62
1704759--1705159	59	6.8	59	90	1	626	33	20	11	34	1.88
1705657--1706059	59	6.8	59	93	0	662	33	21	10	34	1.88
1704578--1707262	898	3.0	900	94	1	4564	34	19	9	35	1.85
1706561--1706907	59	5.9	59	88	4	499	32	20	9	36	1.86
1706551--1706907	117	3.1	116	86	8	508	32	21	9	36	1.86
1706568--1706912	175	2.0	176	89	2	534	32	20	9	36	1.86
1707415--1707452	20	1.9	19	94	5	67	23	23	15	36	1.94
1712866--1713201	59	5.7	59	91	1	516	33	21	11	34	1.88
1712867--1713201	117	2.9	118	89	1	505	33	21	10	34	1.88
1712866--1713186	176	1.8	175	90	2	518	32	20	11	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1713571--1713648	33	2.3	34	93	4	140	32	20	19	28	1.97
1713638--1713690	22	2.5	20	71	11	52	30	22	15	32	1.94
1713605--1713746	76	1.9	76	86	0	203	30	21	16	30	1.95
1718792--1718841	9	5.4	10	90	7	63	70	0	2	28	0.99
1718798--1718841	3	14.7	3	90	9	72	70	0	0	29	0.88
1719031--1719635	133	4.5	134	84	3	722	33	19	16	29	1.94
1720200--1720650	89	5.1	86	76	14	266	42	16	17	23	1.89
1720401--1720663	89	3.0	88	80	8	300	42	16	16	23	1.88
1720217--1720700	45	11.1	45	75	12	327	42	16	16	23	1.88
1720625--1720885	38	6.8	38	79	7	276	38	18	17	26	1.92
1721640--1721727	45	2.0	44	90	2	140	25	21	13	39	1.90
1722816--1722947	7	18.9	7	74	14	94	3	18	0	77	0.92
1722848--1722962	13	8.0	14	77	17	96	1	21	0	76	0.88
1722814--1722946	54	2.4	53	80	14	137	3	19	0	76	0.93
1722818--1722955	46	2.9	48	82	7	147	3	20	0	76	0.94
1722841--1722961	33	3.6	33	76	13	113	2	21	0	76	0.91
1722814--1722951	8	17.4	8	72	16	85	3	19	0	76	0.93
1723701--1723763	33	1.9	33	86	0	90	42	7	23	25	1.81
1730611--1730666	3	18.7	3	89	7	87	37	0	0	62	0.95
1734078--1734258	63	2.9	63	84	1	229	22	19	14	43	1.88
1736935--1737041	53	2.0	53	100	0	214	42	9	14	33	1.78
1746659--1746701	10	4.3	9	83	13	50	83	2	11	2	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1746659--1746709	19	2.7	18	85	11	59	82	1	11	3	0.89
1747770--1747799	12	2.5	12	94	0	51	30	10	10	50	1.69
1753679--1753736	24	2.4	23	81	13	64	36	12	3	48	1.57
1753861--1753936	33	2.3	32	84	2	98	32	19	17	30	1.95
1754172--1754544	123	3.1	121	86	3	495	30	27	16	25	1.97
1754970--1754994	3	8.3	3	100	0	50	36	0	0	64	0.94
1756481--1756568	31	2.9	29	74	15	88	20	18	5	55	1.62
1770128--1770576	36	12.4	36	80	12	469	44	4	6	44	1.49
1770126--1770576	74	6.2	73	85	9	531	44	4	6	45	1.49
1770626--1770654	4	7.5	4	92	7	51	24	0	0	75	0.80
1772016--1772082	23	3.2	21	75	10	59	22	1	4	71	1.12
1771996--1772082	12	6.9	12	69	18	61	21	3	3	71	1.16
1782920--1782955	3	12.0	3	87	0	54	27	0	0	72	0.85
1784897--1784936	2	20.0	2	100	0	80	50	0	0	50	1.00
1788040--1788676	316	2.0	316	97	1	1206	38	19	19	23	1.93
1791059--1791243	91	2.0	91	96	0	343	39	15	20	24	1.91
1793171--1793205	17	2.1	17	100	0	70	42	11	22	22	1.85
1794042--1794074	16	2.0	17	88	5	50	24	0	6	69	1.10
1794042--1794081	20	2.0	20	85	9	55	22	0	7	70	1.12
1796744--1797165	41	10.3	41	78	8	358	27	17	19	35	1.94
1800187--1800444	43	6.0	43	83	4	317	25	22	18	33	1.97
1801042--1801074	13	2.5	13	95	0	57	33	3	0	63	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1804200--1804599	114	3.7	112	88	6	565	36	18	8	37	1.81
1804200--1804503	57	5.3	57	93	0	482	35	18	8	37	1.82
1804457--1804600	55	3.0	45	77	19	173	37	16	8	37	1.79
1804401--1804600	99	2.0	101	95	1	359	37	17	9	36	1.81
1807808--1807864	3	18.7	3	96	3	105	35	0	0	64	0.93
1810385--1811271	45	20.0	45	81	4	832	25	16	16	41	1.89
1810385--1811121	354	2.1	352	87	3	1061	25	16	16	41	1.89
1812360--1812385	2	13.0	2	100	0	52	50	0	0	50	1.00
1815905--1815929	2	12.5	2	100	0	50	52	0	0	48	1.00
1817273--1817368	30	3.2	29	77	11	97	34	12	16	36	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12