genome.fa.s8656.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008656.1 Hibiscus syriacus cultivar Beakdansim tig00111650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2456495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  7  of  12  ( 1378 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1444574--1444655	2	45.0	2	77	22	92	47	1	0	51	1.08
1444574--1444655	25	3.6	22	81	13	96	47	1	0	51	1.08
1444574--1444655	32	2.4	37	86	12	120	47	1	0	51	1.08
1444826--1444867	15	2.8	15	88	0	66	47	21	23	7	1.75
1446247--1446577	49	6.8	49	84	1	412	36	25	15	22	1.93
1449941--1449969	15	1.9	15	100	0	58	44	27	20	6	1.77
1451353--1451683	49	6.8	49	84	1	430	36	25	15	22	1.93
1456892--1456919	14	2.0	14	100	0	56	14	14	14	57	1.66
1456906--1456933	10	2.8	10	100	0	56	17	10	10	60	1.57
1456857--1456966	24	4.7	24	78	4	98	18	11	13	56	1.67
1456891--1456966	24	3.2	24	86	0	107	17	9	13	60	1.58
1457132--1457267	24	5.8	24	77	8	127	12	12	16	58	1.63
1457132--1457243	47	2.4	47	87	0	152	13	13	15	58	1.65
1464442--1464503	23	2.9	21	85	7	81	20	35	25	17	1.95
1467028--1467071	23	2.0	23	81	4	54	50	11	2	36	1.51
1468046--1468327	49	5.8	49	86	0	375	35	24	17	23	1.95
1484473--1484524	15	3.2	17	72	22	58	36	21	0	42	1.53
1487146--1487304	60	2.7	60	80	8	191	38	15	11	34	1.84
1487168--1487304	60	2.3	59	88	6	197	40	16	11	31	1.84
1487453--1487509	28	2.0	28	86	6	80	38	19	14	28	1.90
1490444--1490501	23	2.5	23	73	15	57	48	5	3	43	1.42
1491242--1491333	3	30.3	3	97	2	175	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1491359--1491397	16	2.6	16	84	8	55	51	0	0	48	1.00
1494704--1494729	12	2.2	12	100	0	52	30	0	42	26	1.56
1495197--1495232	18	2.1	18	89	5	56	61	0	2	36	1.11
1495935--1495971	19	1.9	19	88	0	56	64	0	0	35	0.94
1504360--1504400	22	1.9	21	90	5	64	46	2	2	48	1.28
1506247--1506278	2	17.0	2	87	12	50	50	0	0	50	1.00
1508481--1508519	14	2.8	14	88	0	60	28	12	5	53	1.60
1508592--1508620	12	2.3	13	94	5	51	27	13	6	51	1.66
1510633--1510791	84	1.8	84	82	8	201	32	18	16	33	1.93
1515291--1515367	22	3.5	22	96	0	145	33	11	14	40	1.82
1515871--1516201	165	2.0	166	92	1	549	35	15	12	36	1.84
1516204--1517387	76	15.6	76	95	0	2075	23	19	21	35	1.96
1517320--1517422	46	2.3	46	89	3	156	24	19	19	36	1.94
1517547--1517597	3	16.3	3	80	8	57	41	0	0	58	0.98
1517531--1517633	25	3.9	25	76	19	79	44	0	0	55	0.99
1517552--1517639	23	4.6	20	75	24	84	45	0	0	54	0.99
1517599--1517637	2	20.0	2	94	5	71	48	0	0	51	1.00
1520373--1520410	15	2.4	16	82	4	51	76	0	0	23	0.79
1520769--1520814	17	2.7	17	93	0	74	30	36	8	23	1.85
1523846--1523884	13	3.1	13	88	3	53	48	2	7	41	1.45
1533912--1533951	21	1.9	21	85	10	55	35	10	2	52	1.48
1535932--1536022	45	2.0	46	89	2	139	27	18	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1536312--1536385	2	38.0	2	91	5	125	50	1	0	48	1.09
1536673--1536720	21	2.2	22	96	3	89	52	4	12	31	1.58
1537197--1537259	29	2.1	30	82	2	74	23	3	14	58	1.50
1537939--1538013	38	2.0	37	82	10	91	48	4	2	45	1.35
1538313--1538402	42	2.1	42	100	0	180	27	22	17	32	1.97
1538338--1538411	19	3.7	19	70	19	69	28	27	13	31	1.94
1542492--1542547	18	3.0	18	73	16	60	33	10	17	37	1.85
1543045--1543446	63	6.4	63	95	0	714	40	13	19	26	1.89
1549231--1549282	18	2.7	18	82	8	59	34	11	19	34	1.88
1550225--1550350	62	2.0	62	98	0	243	27	8	24	38	1.85
1550361--1550401	3	13.7	3	100	0	82	31	0	0	68	0.90
1551127--1551207	2	40.5	2	100	0	162	50	0	0	49	1.00
1553867--1553931	21	3.0	23	77	11	82	30	7	29	32	1.85
1555020--1555045	11	2.4	11	100	0	52	65	0	0	34	0.93
1559026--1559067	21	2.0	21	100	0	84	28	4	23	42	1.74
1565359--1565388	15	2.0	15	100	0	60	26	13	6	53	1.64
1567984--1568088	30	3.5	30	81	11	124	56	6	18	19	1.63
1568108--1568168	30	2.0	30	84	6	79	50	8	14	26	1.71
1572624--1572660	2	18.5	2	100	0	74	51	0	0	48	1.00
1572624--1572716	17	5.6	17	71	20	54	55	1	3	39	1.23
1573140--1573240	37	2.9	36	88	8	163	27	14	13	43	1.84
1573774--1574433	105	6.3	105	89	3	895	22	16	26	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1574963--1575410	209	2.1	209	98	0	869	39	13	20	25	1.90
1575081--1575446	104	3.5	103	67	15	300	40	14	20	25	1.90
1575425--1575590	65	2.6	65	95	0	296	36	12	19	31	1.89
1575490--1575845	102	3.5	102	96	0	640	36	12	20	29	1.90
1575555--1575863	37	8.9	37	71	16	266	36	13	21	28	1.91
1575390--1575707	167	1.9	169	92	1	532	37	12	20	30	1.89
1576723--1576773	22	2.3	22	96	0	93	25	11	27	35	1.91
1581223--1581254	2	16.0	2	93	0	55	53	0	0	46	1.00
1581675--1581754	41	1.9	43	82	14	105	61	2	3	32	1.27
1581730--1581772	18	2.5	17	85	7	61	67	2	4	25	1.22
1582164--1582265	34	2.9	36	89	7	172	27	14	13	44	1.83
1585972--1586011	19	2.0	20	90	4	64	17	2	0	80	0.83
1598574--1598613	16	2.3	18	91	8	66	50	15	0	35	1.44
1600753--1600790	20	1.9	20	88	0	58	28	23	18	28	1.98
1604104--1604132	2	14.5	2	100	0	58	48	0	0	51	1.00
1607029--1607067	3	12.7	3	83	5	51	61	2	2	33	1.23
1607311--1607896	133	4.4	135	75	2	529	25	17	31	26	1.97
1607822--1607949	42	3.1	42	68	14	102	18	17	38	25	1.93
1607808--1607978	82	2.1	83	79	1	191	22	16	36	23	1.95
1608015--1608081	33	2.2	31	81	10	75	37	14	17	29	1.91
1608340--1608405	33	2.0	33	87	0	96	27	22	16	33	1.96
1609445--1609533	10	8.5	10	73	23	60	0	13	6	79	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1609445--1609549	24	4.1	25	72	20	74	1	12	6	79	1.01
1609445--1609507	23	2.7	24	83	11	78	0	12	7	79	0.93
1609467--1609540	31	2.4	30	82	13	87	0	14	6	78	0.95
1609498--1609574	23	3.1	23	75	17	75	2	15	6	75	1.12
1609445--1609531	45	1.9	45	81	9	106	0	13	6	79	0.93
1609456--1609574	54	2.3	51	82	8	134	1	15	7	75	1.10
1611584--1611614	15	2.1	15	100	0	62	45	12	12	29	1.80
1619724--1620125	131	3.1	130	83	5	456	24	14	13	46	1.82
1620188--1620222	15	2.2	16	90	5	54	25	11	5	57	1.56
1620790--1620827	16	2.3	17	81	4	51	26	5	7	60	1.46
1624480--1624524	2	22.5	2	95	0	81	48	0	2	48	1.13
1625978--1626049	37	2.0	36	83	8	92	31	18	12	37	1.88
1625957--1626070	36	3.1	35	77	8	111	31	19	13	35	1.90
1626434--1626512	32	2.5	32	85	4	97	35	17	12	34	1.88
1626499--1626584	36	2.4	36	88	3	120	22	24	13	39	1.90
1626676--1627050	134	2.8	133	83	1	455	26	29	17	26	1.98
1628360--1628420	29	2.1	29	87	0	86	32	13	4	49	1.63
1629054--1629119	23	2.9	22	72	20	55	40	16	1	40	1.58
1629611--1629664	2	27.0	2	96	0	99	48	1	0	50	1.11
1634579--1634616	20	1.9	20	84	10	51	42	15	0	42	1.47
1634769--1634837	23	3.0	23	79	8	86	31	26	23	18	1.97
1635191--1635226	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1636449--1636550	50	2.0	50	92	0	168	35	23	8	32	1.86
1637637--1637671	18	2.1	17	89	10	54	34	0	0	65	0.93
1641012--1641050	2	19.5	2	100	0	78	51	0	0	48	1.00
1641721--1641757	2	18.5	2	100	0	74	51	0	0	48	1.00
1642968--1643148	4	43.0	4	68	21	61	25	4	1	67	1.18
1642965--1643054	27	3.4	26	72	21	71	25	4	1	68	1.15
1642976--1643065	22	4.0	22	74	20	71	27	3	1	67	1.13
1642993--1643083	26	3.8	24	72	18	73	30	2	1	65	1.11
1643007--1643124	33	3.8	32	73	17	88	28	4	0	66	1.16
1643053--1643140	43	2.1	40	80	12	97	26	4	2	67	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12