genome.fa.s8656.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008656.1 Hibiscus syriacus cultivar Beakdansim tig00111650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2456495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1378 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2356355--2356450	33	2.8	33	90	3	138	41	20	23	13	1.88
2356388--2356455	19	3.8	19	72	21	74	45	19	22	13	1.84
2356460--2356731	20	14.6	20	72	14	129	18	20	20	40	1.92
2356550--2356614	33	1.9	34	87	3	96	16	23	16	43	1.88
2356591--2356633	19	2.3	19	95	0	77	18	20	13	46	1.83
2360055--2360485	20	21.5	20	76	11	199	23	18	23	34	1.96
2360167--2360221	21	2.6	21	80	8	58	34	18	25	21	1.96
2360293--2360504	41	5.2	41	92	1	338	18	18	25	37	1.94
2360513--2360565	20	2.7	20	91	5	81	13	18	24	43	1.86
2360272--2360565	40	7.3	40	80	10	239	18	18	25	37	1.94
2360559--2360610	21	2.5	21	75	12	52	26	19	21	32	1.97
2370058--2370178	3	41.0	3	73	17	85	66	0	2	29	1.10
2370058--2370176	10	11.9	11	70	18	66	67	0	2	29	1.10
2370058--2370174	13	8.8	13	74	13	78	67	0	2	29	1.09
2370931--2371187	102	2.6	101	85	3	333	37	9	19	33	1.84
2370969--2371248	102	2.7	101	83	3	328	38	10	17	33	1.83
2371296--2371913	164	3.9	162	92	2	966	38	11	12	37	1.79
2377878--2378320	81	5.5	81	87	2	608	27	24	11	35	1.91
2377878--2378316	159	2.7	160	89	2	632	27	24	11	35	1.91
2378286--2378818	68	7.8	68	92	1	841	30	22	14	32	1.93
2379185--2379357	58	3.0	59	86	3	235	34	20	12	33	1.89
2379191--2379357	59	2.9	58	87	3	237	34	20	11	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2382770--2383638	138	6.3	137	88	2	1204	39	12	14	32	1.84
2382770--2383638	276	3.1	276	92	1	1368	39	12	14	32	1.84
2383798--2383870	31	2.4	30	78	19	71	39	1	16	42	1.57
2386784--2387115	118	2.8	118	87	2	459	25	12	19	42	1.86
2391636--2391807	90	1.9	88	92	2	290	44	6	11	37	1.67
2392959--2393033	37	2.0	37	97	0	141	25	26	29	18	1.98
2393033--2393092	21	2.9	21	90	2	95	33	15	18	33	1.92
2402240--2402280	16	2.6	16	96	0	73	31	26	14	26	1.95
2404825--2404866	3	13.7	3	80	14	50	69	0	2	28	1.01
2405665--2405919	102	2.6	101	83	5	297	36	11	19	32	1.87
2405854--2405909	29	1.9	29	85	0	76	32	8	17	41	1.81
2405979--2406651	161	4.2	162	89	2	1007	38	12	12	37	1.81
2405979--2406651	324	2.1	322	89	2	1021	38	12	12	37	1.81
2415718--2416081	118	3.1	118	82	3	437	24	15	20	40	1.90
2419972--2420291	118	2.7	118	90	4	500	24	13	21	41	1.88
2421265--2421304	21	2.0	20	85	5	53	60	7	12	20	1.56
2421434--2421481	23	2.1	22	84	3	60	62	8	8	20	1.49
2421445--2421496	23	2.2	24	83	10	72	63	11	5	19	1.47
2437753--2437938	74	2.5	74	83	5	239	30	29	18	21	1.97
2437977--2438026	21	2.4	21	100	0	100	28	20	34	18	1.95
2440583--2440733	6	24.5	6	72	17	71	64	0	2	31	1.12
2440581--2440720	7	20.3	7	71	17	73	65	0	2	31	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2440590--2440680	22	4.2	22	77	8	89	69	1	2	27	1.07
2440933--2440963	2	15.5	2	100	0	62	48	0	0	51	1.00
2441551--2441681	60	2.2	60	88	2	192	45	3	14	35	1.63
2441909--2441934	6	4.3	6	100	0	52	61	0	0	38	0.96
2443779--2443840	22	2.9	22	95	2	108	37	11	17	33	1.86
2444182--2444284	54	1.9	54	93	0	179	29	18	20	32	1.96
2444257--2444739	55	8.9	55	90	3	728	33	20	19	26	1.96
2444258--2444739	161	3.0	163	90	3	733	33	20	19	26	1.96
2444257--2444736	216	2.2	218	90	3	745	33	20	19	26	1.96
2445181--2445314	45	3.0	45	78	5	137	41	11	21	25	1.86
2447614--2447639	3	8.7	3	100	0	52	34	0	34	30	1.58
2447638--2447673	3	12.0	3	100	0	72	66	0	33	0	0.92
2450100--2450191	41	2.2	41	81	11	100	51	8	9	30	1.65
2453493--2453532	17	2.3	18	86	4	55	60	5	17	17	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!