genome.fa.s8656.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008656.1 Hibiscus syriacus cultivar Beakdansim tig00111650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2456495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  2  of  12  ( 1378 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220891--221006	58	2.0	58	91	0	187	41	12	20	25	1.87
232927--233052	60	2.1	60	86	8	177	34	19	4	40	1.73
242809--243034	64	3.5	63	81	3	231	32	18	20	28	1.96
243691--243833	31	4.6	31	97	0	259	18	19	21	39	1.92
247013--247115	45	2.3	45	83	6	120	33	20	17	28	1.95
247057--247198	64	2.2	64	83	2	169	32	21	20	26	1.97
247854--248040	31	6.0	31	97	1	340	19	19	22	38	1.93
255625--255675	21	2.4	21	96	0	93	17	17	39	25	1.92
255943--255979	19	2.1	18	90	10	58	45	5	10	37	1.62
260112--260148	6	6.2	6	93	0	65	0	64	0	35	0.94
262871--262963	19	5.4	19	69	23	89	13	22	18	45	1.85
262872--262963	33	2.8	33	96	0	166	13	22	18	45	1.84
266240--266288	21	2.4	21	86	3	64	40	16	22	20	1.91
266277--266355	20	3.9	20	77	9	70	35	22	18	22	1.96
266578--266665	20	4.4	20	72	5	88	38	20	21	19	1.93
266696--266769	19	4.5	16	83	16	66	13	20	18	47	1.82
266692--266759	19	3.8	19	87	12	101	13	22	17	47	1.82
268344--268435	42	2.2	42	86	1	132	21	15	41	21	1.90
268773--268811	20	2.0	20	94	0	69	33	28	12	25	1.93
268779--268871	20	4.7	20	86	0	105	35	24	21	18	1.95
268799--268923	40	3.3	40	78	9	131	41	21	21	15	1.89
268952--269010	14	3.9	14	78	20	64	10	16	22	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268935--269026	33	2.8	33	96	0	166	11	18	20	48	1.79
268930--269026	19	5.6	19	73	22	106	12	19	20	47	1.81
269586--269633	18	2.7	18	90	0	78	14	14	45	25	1.83
271503--271617	20	5.7	20	77	6	97	23	16	26	33	1.95
271483--271618	41	3.3	41	75	4	141	23	16	25	35	1.95
271611--271673	21	3.0	21	95	0	108	26	23	12	36	1.91
271550--271759	41	5.1	41	71	10	133	26	20	20	32	1.97
271749--271804	20	2.8	20	91	2	94	23	19	14	42	1.88
271791--271843	21	2.5	22	81	6	74	33	18	26	20	1.96
272102--272126	2	12.5	2	100	0	50	48	0	0	52	1.00
274252--274329	21	3.7	21	75	5	68	34	15	14	35	1.87
278743--278803	22	2.8	22	82	7	72	31	24	16	27	1.96
280353--280380	3	9.3	3	100	0	56	67	32	0	0	0.91
283315--283356	22	1.9	22	85	0	57	26	21	23	28	1.99
290844--290890	16	2.7	18	83	12	71	55	0	4	40	1.19
290875--290995	30	4.1	30	93	2	201	44	0	11	43	1.40
290844--290973	60	2.2	60	86	5	174	47	0	9	43	1.35
290834--290892	2	30.0	2	75	21	54	52	0	5	42	1.23
291152--291212	24	2.5	24	76	10	61	21	6	4	67	1.33
291172--291201	12	2.5	12	88	0	51	23	0	6	70	1.11
299040--299099	26	2.4	25	80	2	75	21	25	38	15	1.92
299091--299126	10	3.6	10	89	10	56	33	30	22	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306184--306216	13	2.5	13	95	0	57	15	21	48	15	1.81
306221--306271	10	5.2	10	75	11	52	37	27	19	15	1.92
308210--308252	23	1.9	21	81	13	50	34	16	18	30	1.93
317088--317116	15	1.9	15	100	0	58	82	0	10	6	0.83
318180--318900	134	5.4	134	87	2	946	30	19	19	30	1.96
319300--319480	28	6.5	28	77	14	180	45	0	11	41	1.44
319165--319312	2	74.0	2	81	12	144	51	0	4	43	1.25
319250--319451	78	2.6	78	84	7	277	46	0	9	43	1.39
319371--319506	60	2.2	61	86	10	181	46	0	11	42	1.39
319498--319522	13	1.9	13	100	0	50	32	0	8	60	1.26
326350--326404	15	3.8	14	76	21	51	21	3	1	72	1.09
326351--326392	21	2.1	19	91	8	66	19	2	2	76	1.01
326816--326851	18	2.0	18	100	0	72	11	22	5	61	1.50
330335--330388	22	2.4	22	75	9	56	27	3	12	55	1.54
338821--338870	11	4.5	11	85	5	64	80	10	10	0	0.92
338821--338870	23	2.2	23	88	0	73	80	10	10	0	0.92
346932--347019	40	2.1	42	91	6	144	21	4	11	62	1.46
346940--347030	40	2.2	41	84	7	114	27	4	9	58	1.49
348085--348125	19	2.2	19	86	8	57	41	12	14	31	1.83
354512--354575	23	2.8	23	90	0	101	28	25	26	20	1.99
354506--354585	23	3.4	23	82	1	79	32	21	22	23	1.98
357419--357999	81	7.2	81	84	4	715	28	23	11	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358156--358352	55	3.6	53	77	7	171	32	18	10	38	1.85
358699--358749	22	2.5	21	84	9	61	29	19	17	33	1.95
358772--358826	20	2.7	21	81	16	71	23	25	16	34	1.95
367719--367782	24	2.7	24	90	0	92	21	28	21	28	1.99
370123--370177	21	2.6	21	94	0	101	30	25	23	20	1.98
370186--370309	21	5.9	21	76	12	103	25	19	20	33	1.96
370212--370305	42	2.2	40	96	0	134	24	18	20	37	1.94
370926--370950	6	4.2	6	100	0	50	0	16	48	36	1.46
371043--371265	42	5.3	42	87	3	313	37	22	18	21	1.94
371121--371271	21	7.2	20	75	15	119	37	23	19	19	1.94
372866--372895	2	15.0	2	100	0	60	50	0	0	50	1.00
372409--373405	332	3.1	318	88	5	1467	37	17	10	34	1.84
372409--373405	321	3.1	322	88	5	1529	37	17	10	34	1.84
375934--376071	43	3.3	42	83	7	174	26	18	19	34	1.95
376053--376091	20	2.0	20	100	0	78	5	23	25	46	1.73
381661--381707	3	15.7	3	100	0	94	31	0	0	68	0.90
391855--391946	21	4.5	20	70	9	51	30	9	17	42	1.81
392418--392469	2	26.0	2	100	0	104	50	0	0	50	1.00
401648--401695	22	2.2	22	88	0	69	39	25	16	18	1.91
410171--410213	20	2.2	18	84	12	50	11	0	11	76	1.02
410200--410237	14	2.7	15	80	12	53	13	0	7	78	0.94
410173--410237	21	3.1	21	80	8	62	13	0	10	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412017--412056	20	2.0	21	95	5	73	32	22	20	25	1.98
412102--412159	21	2.8	21	92	5	91	24	29	17	29	1.97
414903--415084	94	1.9	94	85	2	249	31	16	22	29	1.96
415068--415141	20	3.7	20	85	0	76	28	14	29	27	1.95
415055--415131	40	2.0	38	89	5	118	29	14	28	27	1.95
415462--416008	59	9.3	59	89	0	837	34	13	18	33	1.91
415990--416026	18	2.1	18	94	0	65	54	5	13	27	1.61
417691--417723	17	2.0	17	94	5	59	60	6	3	30	1.36
418690--418731	21	2.0	21	86	4	59	7	21	38	33	1.81
419356--419388	16	2.1	16	94	0	57	51	27	0	21	1.48
428404--428436	17	2.0	17	94	5	59	60	6	3	30	1.36
430067--430099	16	2.1	16	94	0	57	51	27	0	21	1.48
433471--433519	23	2.2	22	85	3	62	24	20	34	20	1.96
433450--433529	23	3.7	21	71	12	56	25	21	30	23	1.99
439358--439400	21	2.1	21	86	4	61	6	23	41	27	1.80
449409--449536	54	2.3	56	90	4	199	29	17	30	21	1.97
458397--458427	15	2.1	15	93	0	53	67	0	22	9	1.19
462044--462112	19	3.6	19	98	0	129	34	7	14	43	1.73
490343--490391	19	2.6	19	75	15	57	12	18	0	69	1.19
533507--533557	22	2.3	22	100	0	102	31	9	9	49	1.69
535484--535765	142	2.0	141	96	0	519	36	16	19	28	1.93
536111--536214	52	2.0	52	92	3	174	35	16	10	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539520--539570	18	2.8	18	77	14	50	62	3	9	23	1.42
540428--540452	13	1.9	13	100	0	50	56	16	4	24	1.57
540603--540674	27	2.6	27	93	2	117	33	23	19	23	1.97
541010--541050	15	2.7	15	84	0	55	26	12	26	34	1.92
553417--553461	20	2.2	20	84	7	56	73	4	17	4	1.17
553562--553586	13	1.9	13	100	0	50	52	16	24	8	1.70
558946--558973	2	14.0	2	100	0	56	50	0	0	50	1.00
559023--559674	81	8.0	81	87	1	905	28	21	12	38	1.89
559622--560012	68	5.8	68	87	1	525	29	25	13	31	1.94
561628--562097	81	5.8	81	83	5	380	27	21	12	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12