genome.fa.s8656.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008656.1 Hibiscus syriacus cultivar Beakdansim tig00111650_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2456495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1378 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561676--562101	162	2.6	161	86	1	575	27	20	12	39	1.89
561676--562115	81	5.4	80	85	2	520	27	20	12	38	1.89
562065--562455	68	5.8	68	84	0	444	30	23	13	31	1.93
564078--564562	81	6.0	81	83	0	531	27	21	12	38	1.89
564512--564694	68	2.7	67	83	1	195	33	22	12	31	1.91
564678--564709	15	2.1	15	100	0	64	34	12	12	40	1.81
564551--564845	151	2.0	151	87	4	434	30	23	14	31	1.94
564617--564777	83	1.9	83	86	5	227	31	21	15	31	1.95
564697--564917	68	3.3	68	90	0	336	28	24	15	31	1.95
565126--565272	54	2.7	54	77	9	165	31	19	12	36	1.88
566516--567090	81	7.1	81	87	0	803	27	22	12	37	1.90
567038--567414	68	5.6	68	83	2	463	30	23	14	31	1.94
569007--569539	81	6.6	81	82	0	589	28	22	11	37	1.89
569482--569866	68	5.7	68	83	0	439	30	23	13	32	1.93
570086--570229	55	2.6	55	85	1	173	31	22	11	34	1.90
571602--571987	81	4.8	80	87	1	504	27	22	12	38	1.89
571615--571987	162	2.3	162	90	1	561	27	21	11	38	1.89
572124--572540	54	7.7	54	83	4	475	28	17	17	35	1.94
572865--572913	19	2.4	22	86	10	68	30	26	14	28	1.95
577970--578378	81	5.0	81	88	3	567	27	21	11	39	1.88
578324--578649	68	4.8	68	87	0	454	27	24	14	32	1.95
578866--579001	55	2.5	55	84	3	177	33	20	10	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579348--579570	95	2.3	95	87	4	299	26	24	15	34	1.95
579557--579612	21	2.7	21	75	2	60	32	23	14	30	1.94
589084--589126	17	2.6	16	85	7	59	16	4	0	79	0.90
591967--592009	21	2.0	21	95	0	77	16	4	37	41	1.69
593909--593954	19	2.4	19	92	0	74	41	8	10	39	1.71
595919--595987	18	3.8	18	94	3	113	52	10	26	11	1.69
600039--600096	23	2.7	20	70	17	53	29	17	15	37	1.90
600579--600611	12	2.6	13	90	4	50	36	12	6	45	1.66
601167--601195	15	1.9	15	100	0	58	34	6	31	27	1.83
605000--605039	21	1.9	21	94	0	71	20	12	20	47	1.81
605364--605443	25	3.4	24	79	8	92	35	22	18	23	1.96
605356--605458	22	4.5	22	80	7	82	32	23	21	23	1.98
605400--605465	22	3.0	22	84	0	78	28	22	25	22	1.99
609157--609221	33	1.9	33	90	9	105	24	9	13	52	1.70
619573--619798	44	5.2	44	81	4	242	26	19	12	41	1.87
619573--619798	88	2.6	87	85	0	281	26	19	12	41	1.87
621635--621662	8	3.5	8	100	0	56	53	0	46	0	1.00
622800--623017	44	5.0	44	88	2	323	38	11	22	26	1.89
626624--626677	22	2.5	22	84	6	65	40	20	12	25	1.88
627972--628009	20	1.9	20	88	0	58	34	13	18	34	1.89
628032--628413	194	2.0	193	88	1	577	43	12	13	30	1.80
629736--629765	15	1.9	16	93	6	53	40	20	30	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631486--631597	6	18.5	6	81	5	109	32	9	4	53	1.54
631486--631598	30	3.7	30	87	5	147	31	9	4	53	1.53
633425--633470	21	2.2	20	81	7	56	23	15	15	45	1.84
633041--634117	448	2.4	445	87	2	1541	42	13	15	29	1.84
635527--635570	21	2.1	21	100	0	88	15	13	29	40	1.86
641566--642117	273	2.0	274	90	2	869	39	16	13	31	1.86
647808--647881	6	11.6	7	87	9	58	60	2	1	35	1.19
647831--647882	3	17.3	3	100	0	104	67	0	0	32	0.91
648246--648279	16	2.1	17	88	5	52	55	11	2	29	1.50
648597--648637	20	2.0	21	95	4	75	9	51	29	9	1.67
654679--654707	14	2.1	14	93	6	51	0	13	0	86	0.58
686764--686840	31	2.5	31	89	2	120	28	42	16	11	1.84
699494--699546	3	17.7	3	90	0	79	62	0	3	33	1.13
701715--701776	32	1.9	32	83	6	81	29	16	9	45	1.79
703450--704210	259	3.0	258	88	4	1149	39	21	9	28	1.85
703770--704210	244	1.8	243	93	1	767	39	22	9	28	1.86
705078--705133	29	2.0	29	93	6	98	14	19	10	55	1.68
707537--707655	31	4.0	28	80	8	121	33	19	16	30	1.94
707590--707662	29	2.6	29	97	2	139	35	17	15	31	1.91
709305--709355	26	2.0	26	88	0	75	27	11	39	21	1.88
709824--709860	18	2.1	18	100	0	74	35	5	16	43	1.71
709902--710067	60	2.8	60	80	7	160	32	21	4	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
710239--710327	29	3.0	29	68	18	74	40	4	21	33	1.73
712059--712088	2	15.0	2	100	0	60	50	0	0	50	1.00
712805--712970	57	2.8	60	76	7	169	36	13	16	33	1.88
715028--715075	18	2.7	18	96	3	89	62	10	8	18	1.52
715475--715563	44	2.0	44	100	0	178	52	13	8	24	1.69
716898--716942	3	14.7	3	95	4	81	66	0	0	33	0.92
718910--718934	10	2.5	10	100	0	50	52	0	16	32	1.44
719429--719981	54	10.3	54	94	0	946	33	14	16	36	1.89
726517--726872	162	2.2	162	88	3	502	33	13	14	37	1.86
726516--726836	54	5.9	54	91	0	507	33	12	15	38	1.85
728674--728709	18	2.0	18	100	0	72	27	22	16	33	1.95
736643--737066	54	7.9	54	89	1	611	32	13	16	37	1.87
736643--737066	161	2.6	161	88	1	620	32	13	16	37	1.87
736643--737066	107	4.0	108	89	1	611	32	13	16	37	1.87
740127--740160	18	1.9	18	88	5	52	38	2	2	55	1.30
748161--748286	42	3.0	42	78	11	152	24	20	21	33	1.97
747885--748817	271	3.4	271	91	1	1472	28	16	20	34	1.94
748433--748534	42	2.5	41	86	1	141	26	22	20	30	1.98
748705--748786	42	2.0	42	95	0	146	23	19	23	34	1.97
748705--748805	42	2.4	42	88	1	141	22	20	22	33	1.97
748799--748837	20	2.0	20	100	0	78	28	35	15	20	1.93
749231--749304	3	26.0	3	84	15	104	29	0	1	68	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752877--752916	3	12.7	3	84	10	53	67	0	0	32	0.91
752877--752916	13	3.1	13	96	0	71	67	0	0	32	0.91
752877--752916	16	2.5	16	88	8	55	67	0	0	32	0.91
756685--756745	30	2.0	30	96	0	113	39	16	14	29	1.88
759057--759085	2	14.5	2	100	0	58	0	0	48	51	1.00
762467--762559	43	2.2	43	82	9	118	40	37	8	12	1.74
762425--763054	216	2.9	217	80	9	654	36	26	11	25	1.90
777101--777144	12	3.7	13	74	20	51	27	0	0	72	0.85
777100--777142	23	1.9	22	95	4	77	25	0	0	74	0.82
777372--777413	16	2.6	16	100	0	84	16	19	4	59	1.54
777463--777727	132	2.0	135	89	3	410	48	7	9	34	1.64
781702--781730	11	2.6	11	100	0	58	27	20	41	10	1.85
782162--782193	12	2.7	12	95	0	55	6	6	18	68	1.32
782770--783149	134	2.9	132	87	2	510	29	16	21	32	1.95
783695--783742	23	2.1	22	88	3	69	58	8	18	14	1.61
787558--787649	44	2.1	45	87	6	134	29	20	15	34	1.93
788713--788767	7	7.9	7	86	8	67	3	16	0	80	0.86
788713--788821	14	7.8	13	69	19	69	5	18	0	76	0.98
788725--788819	9	10.8	8	74	21	59	4	17	0	77	0.92
788713--788819	35	3.0	34	77	9	108	5	17	0	76	0.97
792947--793008	27	2.3	27	88	0	88	33	11	9	45	1.73
793635--793669	18	1.9	18	100	0	70	34	20	22	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795898--796031	35	3.8	35	77	7	137	33	18	19	28	1.96
795893--796032	71	2.0	71	88	0	208	34	17	20	27	1.95
797104--797164	27	2.3	27	82	5	79	31	14	11	42	1.81
798685--798728	3	14.7	3	86	9	63	65	0	4	29	1.12
801133--801198	32	2.1	32	91	0	105	19	19	9	51	1.73
802627--802651	2	12.5	2	100	0	50	48	0	0	52	1.00
803343--803387	22	2.0	22	86	0	63	46	15	8	28	1.76
804700--804736	19	1.9	19	89	10	58	48	8	2	40	1.47
806301--806363	33	1.9	33	100	0	126	31	12	26	28	1.93
809595--809747	3	51.7	3	97	2	292	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12