genome.fa.s8716.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008716.1 Hibiscus syriacus cultivar Beakdansim tig00111769_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5677467

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  10  of  24  ( 2813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2566173--2566225	20	2.5	21	87	9	72	41	3	0	54	1.18
2566142--2566229	3	29.7	3	75	6	63	40	3	2	53	1.30
2566303--2566358	19	3.1	19	73	23	66	50	12	0	37	1.41
2566087--2566487	124	3.3	121	82	8	437	44	8	1	45	1.42
2566460--2566494	11	3.1	12	88	12	56	42	5	0	51	1.25
2566078--2566487	98	4.2	96	79	11	376	44	8	1	45	1.43
2566680--2566839	49	3.1	57	89	9	172	46	11	0	42	1.39
2566701--2566839	49	2.8	49	97	0	269	46	12	0	41	1.41
2570949--2570975	2	13.5	2	100	0	54	48	0	0	51	1.00
2587931--2587964	15	2.3	15	89	0	50	8	17	64	8	1.47
2592454--2592565	60	1.9	59	84	1	152	33	14	16	35	1.88
2599729--2599816	43	2.2	38	77	18	88	31	3	12	52	1.56
2601290--2601336	22	2.1	23	84	11	62	44	2	2	51	1.25
2601453--2601521	19	3.6	18	71	21	52	49	1	1	47	1.19
2601417--2601501	27	3.1	27	71	19	68	47	1	2	49	1.22
2601487--2601567	35	2.3	36	81	12	98	53	2	0	44	1.14
2601822--2601856	14	2.5	14	95	0	61	54	2	0	42	1.15
2616217--2616508	150	1.9	151	99	0	577	32	21	14	31	1.93
2624588--2624665	32	2.4	32	86	0	102	32	15	14	38	1.87
2626133--2626204	31	2.3	32	82	4	92	44	11	6	37	1.67
2626441--2626508	22	3.1	21	70	24	52	61	0	27	10	1.28
2631003--2631046	22	2.0	23	90	4	72	22	27	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2631022--2631323	147	2.1	145	94	3	525	33	21	18	27	1.96
2632201--2632235	18	1.9	18	88	11	54	22	17	5	54	1.64
2632816--2632860	21	2.1	21	87	0	63	15	24	28	31	1.96
2640867--2640901	16	2.1	18	89	10	56	51	0	0	48	1.00
2643979--2644117	21	6.8	21	71	6	79	37	25	16	20	1.93
2644085--2644278	20	9.6	20	81	6	78	35	26	18	19	1.95
2644085--2644278	40	4.8	39	83	3	208	35	26	18	19	1.95
2644085--2644277	60	3.2	60	82	3	244	35	26	18	19	1.95
2644631--2644701	33	2.2	33	92	0	115	12	22	16	47	1.80
2644781--2644890	21	5.8	20	74	17	108	45	18	24	11	1.83
2644774--2644890	41	3.1	38	81	14	145	46	17	25	11	1.81
2644841--2644897	14	3.7	14	75	20	60	43	22	24	8	1.81
2644833--2644913	33	2.5	33	95	0	144	46	22	22	8	1.78
2644909--2645036	19	7.1	19	71	19	87	10	25	18	45	1.82
2644931--2644987	14	3.7	14	75	20	60	8	24	22	43	1.81
2644914--2645036	33	3.5	33	88	10	165	10	24	18	46	1.81
2644972--2645036	21	3.1	21	82	4	96	10	26	15	47	1.78
2646734--2647014	92	3.1	93	96	2	523	22	12	18	45	1.83
2647059--2647186	19	7.3	19	76	18	125	47	28	15	8	1.75
2647094--2647186	33	2.8	33	88	6	136	49	26	16	7	1.72
2647145--2647171	14	1.9	14	100	0	54	48	29	14	7	1.71
2647182--2647297	19	6.6	19	73	19	108	12	19	22	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2647204--2647260	14	3.7	14	77	20	60	10	21	22	45	1.82
2647187--2647279	33	2.8	33	95	0	168	10	20	21	47	1.80
2647750--2647808	21	2.8	21	65	0	55	22	40	18	18	1.91
2648202--2648237	14	2.6	14	95	0	63	33	0	22	44	1.53
2648344--2648440	19	5.4	19	85	12	150	46	17	21	14	1.84
2648344--2648459	52	2.2	52	98	0	223	43	18	24	13	1.86
2648455--2648616	33	4.8	33	71	16	143	14	22	17	45	1.85
2648449--2648669	19	12.7	19	74	20	207	15	21	18	44	1.86
2648449--2648669	52	4.2	53	93	3	353	15	21	18	44	1.86
2648486--2648681	33	5.7	34	72	19	158	14	21	18	45	1.84
2650893--2650917	12	2.1	12	100	0	50	0	28	0	72	0.86
2651092--2651138	24	2.0	24	87	8	69	38	21	14	25	1.92
2651831--2652059	20	11.4	20	87	1	253	19	17	25	36	1.94
2654962--2655017	28	2.0	28	86	6	78	37	1	0	60	1.07
2656629--2656658	15	1.9	16	93	6	53	63	13	0	23	1.29
2660974--2660998	2	12.5	2	100	0	50	52	0	0	48	1.00
2666519--2666584	31	2.1	31	88	5	98	27	7	15	50	1.71
2676226--2676268	20	2.3	19	88	11	70	23	30	9	37	1.86
2676231--2676268	20	1.9	20	100	0	76	23	28	10	36	1.88
2676342--2676375	17	2.1	17	88	5	52	55	0	5	38	1.24
2678825--2678867	13	3.3	13	86	0	59	16	39	23	20	1.92
2678811--2678845	18	1.9	18	94	0	61	17	45	22	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2681313--2681404	12	7.8	12	72	16	66	19	15	17	47	1.82
2681313--2681408	24	4.0	23	80	8	95	20	14	16	47	1.82
2681589--2681622	2	17.0	2	100	0	68	50	0	0	50	1.00
2683571--2683601	13	2.4	13	100	0	62	16	48	22	12	1.80
2684905--2684939	18	1.9	18	88	0	52	54	0	17	28	1.43
2686040--2686130	47	1.9	47	82	10	114	19	13	17	49	1.79
2686037--2686132	24	4.0	24	80	8	99	20	12	17	48	1.79
2686546--2686616	27	2.6	27	95	0	124	25	29	5	39	1.78
2689210--2689246	2	18.5	2	100	0	74	48	0	0	51	1.00
2689617--2689662	24	2.0	24	82	4	58	26	2	2	69	1.11
2696226--2696272	15	3.1	15	100	0	94	34	31	19	14	1.92
2696417--2696463	12	3.9	12	94	0	76	38	23	2	36	1.67
2696836--2696887	19	2.7	19	100	0	104	23	30	17	28	1.97
2696855--2697015	64	2.5	63	86	7	202	26	22	18	31	1.97
2703216--2703277	15	4.1	15	97	0	115	33	30	19	16	1.94
2703422--2703468	12	3.9	12	94	0	76	38	23	2	36	1.67
2703775--2703916	64	2.2	64	81	5	153	24	19	23	32	1.98
2704890--2704958	23	3.0	23	91	0	102	21	26	24	27	1.99
2705288--2705340	16	3.2	16	72	5	52	30	1	26	41	1.66
2708237--2708284	18	2.7	18	80	9	62	41	0	4	54	1.20
2709015--2709066	21	2.6	20	87	6	70	1	44	0	53	1.11
2709015--2709050	7	5.1	7	100	0	72	0	44	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2718480--2718513	17	2.1	16	88	5	50	58	5	17	17	1.57
2721057--2721088	13	2.4	14	89	10	57	21	6	9	62	1.47
2723736--2723792	29	2.0	29	96	0	105	36	15	3	43	1.64
2732721--2732782	24	2.6	24	85	10	74	43	3	8	45	1.49
2732745--2732792	24	2.0	24	84	8	62	41	0	14	43	1.45
2735677--2735833	21	7.8	20	72	7	84	38	24	17	19	1.92
2735800--2735992	20	9.6	20	80	6	212	35	25	19	19	1.95
2736375--2736445	33	2.2	33	92	0	115	11	22	18	47	1.80
2736527--2736634	21	5.7	20	73	17	104	46	17	25	11	1.81
2736527--2736634	41	2.9	37	84	13	134	46	17	25	11	1.81
2736585--2736641	14	3.7	14	72	20	51	45	22	22	8	1.80
2736577--2736657	33	2.5	33	93	0	135	48	22	20	8	1.77
2736653--2736780	19	7.1	19	70	19	78	11	25	17	45	1.82
2736675--2736731	14	3.7	14	70	20	51	10	24	21	43	1.83
2736658--2736780	33	3.5	33	85	10	156	11	24	17	46	1.81
2736716--2736780	21	3.1	21	82	4	96	10	26	15	47	1.78
2738465--2738652	92	2.1	91	96	3	351	22	12	19	45	1.84
2738699--2738745	19	2.4	20	89	3	69	44	25	17	12	1.84
2738699--2738775	19	4.3	19	73	17	65	45	27	16	10	1.80
2738771--2738924	19	8.6	19	75	14	139	12	19	22	46	1.83
2738793--2738849	14	3.7	14	72	20	51	12	21	21	45	1.83
2738776--2738906	33	3.8	33	85	7	172	11	19	21	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2739381--2739440	20	3.0	20	66	11	50	23	38	18	20	1.93
2740829--2740864	14	2.6	14	95	0	63	33	0	22	44	1.53
2740971--2741035	19	3.4	19	97	2	121	46	16	21	15	1.84
2741044--2741194	19	8.7	19	72	21	143	15	21	18	45	1.86
2741044--2741163	52	2.3	52	95	1	213	15	22	17	45	1.85
2741101--2741208	33	3.2	33	87	7	173	12	21	19	46	1.83
2744356--2744583	20	11.5	20	83	3	219	19	18	25	36	1.94
2744378--2744583	79	2.6	79	81	6	231	19	18	25	35	1.95
2744570--2744651	21	4.0	21	73	7	69	25	15	24	34	1.95
2747864--2747907	21	2.0	22	83	12	56	40	0	0	59	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24